Couchioplanes caeruleus: COUCH_35315
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Entry
COUCH_35315 CDS
T08133
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ccaz
Couchioplanes caeruleus
Pathway
ccaz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ccaz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
COUCH_35315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccaz03021
]
COUCH_35315
03400 DNA repair and recombination proteins [BR:
ccaz03400
]
COUCH_35315
Enzymes [BR:
ccaz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
COUCH_35315
Transcription machinery [BR:
ccaz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
COUCH_35315
DNA repair and recombination proteins [BR:
ccaz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
COUCH_35315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
UQU64179
LinkDB
All DBs
Position
complement(7649225..7652665)
Genome browser
AA seq
1146 aa
AA seq
DB search
MAASRPAKTSRTSSAYAPRRISFGRITEQLEVPNLLALQTESFDWLVGNEAWQARSTDDP
HAQSGLAEILEEISPIEDFSGTMSLSFSSPRFDEVKASIEECKEKDLTYCAPLFVTAEFT
NNTTGEIKSQTVFMGDFPMMTPKGTFVINGTERVVVSQLVRSPGVYFTKEPDKTSDRDLS
SVKVIPSRGAWLEFDIDKRDTVGVRIDRKRRQAVTVLLKAIGWSADQIRERFGWSELLMT
TLEKDHIAGQDEALLDIYRKLRPGEPPTRENAQTLLDNLFFNPKRYDVAKVGRYKFNKKL
EIDVPIDRGTLTEEDVVRTVEYLCRLHAGEEGYEADDIDHFGNRRLRTVGELIQNQVRVG
LSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQTNPLAGLTHR
RRLSALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNIGLIGALSTFARVNPFGFV
ETPYRKVENGRVTDEVHYLTADEEDRFIKAQANAPLSSDNTFAEDRVLVRRKGGEVDYVP
GTDVDYMDVSPRQMTSVATAMIPFLEHDDANRALMGANMQRQAVPLVKAEAPLVGTGMEY
RAAVDAGDVVVAEVGGVVEDLCADYVTVHQDDGHRRTYLLHKFRRSNAGSCVNQKPVVFE
GDRVEAGQVIADGPCTDEGEMALGRNLLVAFMCWEGHNYEDAIILSQRLVQQDVLTSIHI
EEHEVDARDTKLGPEEITRDIPNVSEEMLADLDERGIIRIGAEVVPGDILVGKVTPKGET
ELTPEERLLRAIFGEKAREVRDTSLKVPHGETGTVIGVRTFSREDGDELPPGVNELVRVY
VAQKRKIQDGDKLAGRHGNKGVISKILPIEDMPFLEDGTPVDIVLNPLGVPSRMNIGQVL
ETHLGWIAKTGWEVEGDDADWKRQLRAIEAHESPADSNVATPVFDGAQEEEIKGLLESTL
VNRDGNRLVNGDGKAQLFDGRSGEPLPDPISVGYVYILKLNHLVDDKIHARSTGPYSMIT
QQPLGGKAQFGGQRFGEMECWAMQAYGAAYALQELLTIKSDDVLGRVKVYEAIVKGENIP
EPGIPESFKVLLKELQSLCLNVEVLSSDGVALEMRETDDEVFRAAEELGIDLSRRPNEGV
SSVEEI
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
ttggcagcttcccgccctgcgaagaccagtcgtacgtcgagcgcttacgctccccgccgt
atctcgttcggcaggatcaccgagcaacttgaggtccccaacctccttgccctccagacg
gagtccttcgactggctggtaggcaacgaggcgtggcaggcccgttcgacggacgatccg
catgcccagtcgggcctcgcagagatcctcgaagagatcagtcccattgaggacttctcc
ggcacaatgtcgctgtccttctcctccccgcgcttcgacgaggtcaaggcctcgatcgag
gagtgcaaggagaaggacctgacctactgcgcaccgctgttcgtgaccgcggagttcacc
aacaacacgactggcgagatcaagagccagaccgtgttcatgggtgacttcccgatgatg
acccccaaggggacgttcgtcatcaacggcaccgagcgcgtcgtggtgagtcagctcgtc
cgctcgccgggcgtgtacttcacgaaggagccggacaagacctccgaccgcgacctctcc
agtgtcaaggtcatcccgagccggggcgcctggctcgagttcgacatcgacaagcgcgac
accgtcggtgtccgcatcgaccgtaagcgccggcaggccgtcaccgtcctgctcaaggcg
atcggttggtcggcggaccagatccgggagcggttcggctggtccgagctgctcatgacg
acgctcgagaaggaccacatcgcggggcaggacgaggccctgctcgacatctaccgcaag
ctccgcccgggtgagcccccgacccgcgagaacgcgcagaccctgctcgacaacctcttc
ttcaacccgaagaggtacgacgtcgccaaggtcggccgttacaagttcaacaagaagctc
gagatcgacgtaccgatcgaccgcggcaccctcaccgaggaagacgtcgtccgcaccgtg
gagtacctctgccggctgcacgccggtgaggagggctacgaggccgacgacatcgaccac
ttcggcaaccggcgcctgcgtacggtgggcgagctgatccagaaccaggtccgcgtcggc
ctgtcccgcatggagcgcgtcgtccgcgagcgcatgaccacgcaggacgtcgaggccatc
acgccgcagaccctgatcaacatccgccccgtggtggctgcgatcaaggagttcttcggc
acctcgcagctgtcgcagttcatggaccagaccaacccgctggcgggtctgacccaccgg
cgccggctgagcgcgctcggcccgggtggtctgtcccgcgagcgggcgggcttcgaggtc
cgtgacgtgcacccgtcccactatggccggatgtgcccgatcgagaccccggaaggcccg
aacatcggcctgatcggtgccctctcgacgttcgcgcgggtgaacccgttcggtttcgtc
gagaccccgtaccgcaaggtggagaacggccgcgtcaccgacgaggtccactacctcacc
gcggacgaggaagaccggttcatcaaggcgcaggcgaacgccccgctctcgagcgacaac
accttcgccgaggaccgcgtcctggtccgccgtaagggtggtgaggtcgactacgtgccc
ggcaccgacgtcgactacatggacgtctcgccgcggcagatgacctcggtcgccaccgcg
atgatcccgttcctcgagcacgacgacgccaaccgcgcgctcatgggcgcgaacatgcag
cgtcaggccgtaccgctggtcaaggcggaggcgccgctggtcggcaccggcatggagtac
cgtgccgccgtcgacgccggtgacgtggtcgtggccgaggtcggcggtgtggtcgaggac
ctgtgcgccgactacgtgacggtgcaccaggacgacggtcaccgtcgtacgtacctgctg
cacaagttccgtcgcagcaacgccggctcctgcgtcaaccagaagcccgtcgtcttcgag
ggcgaccgggtcgaggccggccaggtcatcgccgacggtccgtgcaccgacgagggggag
atggccctcggccgcaacctgctcgtcgcgttcatgtgctgggagggccacaactacgag
gacgcgatcatcctgtcgcagcgcctcgtgcagcaggacgtcctcacctcgatccacatc
gaggagcacgaggtcgacgcccgcgacaccaagctcggcccggaagagatcacccgcgac
atccccaacgtcagcgaggaaatgctcgccgacctggacgagcgcggcatcatccggatc
ggtgccgaggtcgtgcccggcgacatcctggtcggcaaggtcacgcccaagggcgagacc
gagctgaccccggaggagcggctgctccgcgcgatcttcggtgagaaggcgcgcgaggtc
cgtgacacctcgctgaaggttccgcacggcgagaccggcacggtcatcggcgtacgcacc
ttctcgcgcgaggacggcgacgagctgcccccgggcgtgaacgagctggtccgggtgtac
gtcgcccagaagcgcaagattcaggacggcgacaagctcgccggccggcacggcaacaag
ggcgtcatctcgaagatcctgccgatcgaggacatgccgttcctggaggacggcaccccg
gtcgacatcgtgctgaacccgctcggtgtgccctcgcgtatgaacatcggccaggtcctg
gagacccacctcgggtggatcgccaagacgggctgggaggtcgagggcgacgacgccgac
tggaagcgtcagctgcgggccatcgaggcgcacgagtcccccgcggactcgaacgtcgcg
accccggtcttcgacggcgcccaggaggaggagatcaagggtctcctcgagtcgacgctc
gtcaaccgcgacggcaaccggctggtcaacggcgacggcaaggcgcagctgttcgacggc
cgctccggcgagccgctgccggacccgatctccgtcgggtacgtgtacatcctgaagctg
aaccacctggtcgacgacaagatccacgctcggtcgaccggcccgtactcgatgatcacg
cagcagccgctgggtggtaaggcgcagttcggtggccagcggttcggcgagatggagtgc
tgggcgatgcaggcctacggcgcggcatacgcgctgcaggagctgctcaccatcaagtcc
gatgacgtcctgggtcgcgtgaaggtctacgaggccatcgtcaagggcgagaacatcccg
gagccgggaatcccggagtcgttcaaggtgctgctcaaggagctgcagtcgctgtgcctc
aacgtcgaggtgctctccagcgacggcgtggccctggagatgcgcgagaccgacgacgag
gtcttccgggccgcggaagaactcggcatcgacctgtcccgccgcccgaacgagggcgtc
agcagcgtcgaagagatctga
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