Campylobacter coli CVM N29710: G157_06250
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Entry
G157_06250 CDS
T02838
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ccc
Campylobacter coli CVM N29710
Pathway
ccc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ccc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
G157_06250 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccc03021
]
G157_06250 (rpoB)
03400 DNA repair and recombination proteins [BR:
ccc03400
]
G157_06250 (rpoB)
Enzymes [BR:
ccc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
G157_06250 (rpoB)
Transcription machinery [BR:
ccc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
G157_06250 (rpoB)
DNA repair and recombination proteins [BR:
ccc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
G157_06250 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AGV10346
LinkDB
All DBs
Position
complement(1264563..1268690)
Genome browser
AA seq
1375 aa
AA seq
DB search
MLDNKLRNRLRVDFSNISKQIEIPNLLQLQKASFDYFLNLENGESGIEKVFKSIFPIHDP
QNRLSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIRLTLHEKDEKTGEKVGIKDIKE
QEIYIREIPLMTDRVSFIINGVERVVVNQLHRSPGVIFKEEESSTVVNKLVYTAQIIPDR
GSWLYFEYDAKDVLYVRINKRRKVPVTMLFRALGYKKQDIIKLFYPIQTIHVKKDKFLTE
FNPSDFMDRIEYDIKDEKGNIIHQAGKRLTKKKAEQLIKDGLKWIEYPVEILLNRYLANP
IIDKESGEVLFDSLTLLDESKLAKIKEQKSFEIANDLANGVDAAIINSFAQDNETLKLLK
QSENIDDENDLAAIRIYKVMRPGEPVVKDAAKAFVNDLFFNPERYDLTKVGRMKMNHKLG
LEVPEYVTVLTNEDIIKTAKYLIKVKNGKGHIDDRDHLGNRRIRSIGELLANELHLGLAK
MQKAIRDKFTSLNADLDKVMPYDLINPKMITTTIIEFFTGGQLSQFMDQTNPLSEVTHKR
RLSALGEGGLVKERAGFEVRDVHSTHYGRICPVETPEGQNIGLINTLSTYAKVNELGFVE
APYRKVANGKVTNEVVYLTATQEEGLFIAPASTKVDAKGNIVEEFVEARQDGETILARRE
EVQLIDLCSGMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLTASAPIVGTGMEQII
ARDAWEAVKAKRGGVVEKVDNKSIFILGEDDKGPFIDHYTMEKNLRTNQNTNYIQHPIVK
KGDIVKAGQIIADGPSMDQGELAIGKNALIAFMPWNGYNYEDAIVVSERIIREDTFTSVH
IYEKEIEARELKDGIEEITKDIPNVKEEDVAHLDESGIAKIGTHIKPGMILVGKVSPKGE
VKPTPEERLLRAIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDRAIKSYDKE
KMALEKEHHDRLLMMDREEMLRVCALLSKAPLNSDQKIGDKNYKKGQTADISELEKINRF
TLTTLIKAYSKEIQKEYDDLKNHFQNEKKKLKAEHDEKLEILEKDDILPSGVIKLVKVYI
ATKRKLKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRMNIGQILE
SHLGLVGLRLGDQIQEIFDRKQKDFVKELRAKMLEICSIPRLVNEKEFIKNLSDEELLNY
ARDWSKGVKFATPVFEGVNIEEFAKLFEIAKIDMDGKTELYDGRTGEKIAERVHVGCMYM
LKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLREMLT
IKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDKDEDNE
NT seq
4128 nt
NT seq
+upstream
nt +downstream
nt
atgttagacaataaattaagaaatcgtttaagagtagatttctccaatatttcaaagcaa
atagaaattccaaatcttcttcaacttcaaaaagcaagttttgattattttttaaatctt
gaaaatggtgaaagtggaatagaaaaagtatttaaatcaatctttcctatccatgatcca
caaaataggttaagtcttgagtatgttagtagcgaaattggaaaaccaaaatacacaatt
cgtgagtgcatggaaagaggtttgacttactctgtaaatttaaaaatgaaaatccgtctt
accttacatgagaaagatgagaaaacaggtgaaaaagttggtataaaagatatcaaggag
caagaaatttatataagagaaattccattgatgacagatagggtttcttttattatcaat
ggggttgaaagagttgtagttaatcagcttcatagaagtccaggcgtaatcttcaaagaa
gaagaaagctcgactgttgttaataagcttgtatacactgctcaaattattcctgatcgc
ggttcttggctttattttgaatatgatgctaaggatgtattgtatgtaaggattaataaa
agaagaaaagttccagtaacaatgctttttagagctttaggatataaaaaacaagatatt
attaaattattttatcctattcagactattcacgttaaaaaagataaatttttaacagaa
tttaatccaagtgattttatggatagaatagaatacgatatcaaggatgaaaagggtaat
attatccatcaagccggtaaaagattaaccaagaaaaaagccgaacagcttattaaagat
ggcttaaaatggatagaatatccagtagaaattttgttaaatcgttatctagccaatcct
attattgataaagaaagtggcgaagttttatttgactctctaaccttacttgatgaaagc
aaacttgctaaaattaaagagcaaaaaagttttgaaatagctaatgacttggcaaatgga
gtggatgcagctattattaattcatttgcacaagataatgaaactttaaaattattaaaa
caaagtgaaaatatcgatgatgaaaatgatttagcagctattagaatttataaagtaatg
cgcccaggtgagcctgttgtaaaagatgcggctaaagcctttgttaatgatttatttttt
aatcctgaaagatatgatcttactaaagtaggtcgtatgaaaatgaaccataaactagga
cttgaagttccagaatatgtaacagttctaaccaatgaagacattatcaaaactgcaaaa
tatttaattaaagtaaaaaatggtaaaggacatattgatgatagagatcatttaggaaat
cgtcgtatccgttctataggtgaacttttagccaatgaacttcatttaggtcttgcaaaa
atgcaaaaggcgatcagagataaatttacttctttaaatgcggatcttgataaagtaatg
ccttatgatttaatcaatcctaaaatgattactacaactatcattgaattttttacagga
ggtcagctttcgcaatttatggatcaaaccaaccctttaagcgaggttactcataagcgt
cgtttatcagcgcttggtgaaggtggacttgtaaaagaaagagcaggttttgaagtacgt
gatgttcactcgacacattatggtagaatttgtccagttgaaacacctgaaggtcaaaat
attggtttgattaacactctttctacttatgcaaaagtaaatgaacttggctttgttgaa
gcaccatatagaaaagttgcaaatggtaaagtgactaatgaagttgtttatcttacagcg
acacaagaagaaggcttgtttatcgcaccagcttcaactaaggttgatgctaaaggcaat
atagtagaagaatttgttgaggctagacaagatggtgaaactatacttgcaagacgcgaa
gaagtgcaattaatcgatctttgctcaggtatggttgttggagttgcagcttctttgatt
ccgtttttagagcacgatgatgcaaacagagcgctaatgggttcaaacatgcaacgtcaa
gctgtgccacttcttactgcttcagctccgatagtaggaacaggtatggaacaaattatt
gcgcgtgatgcttgggaagctgttaaagcaaagcgtggcggtgtggttgagaaagtggat
aataaaagcatttttattttaggtgaagatgataaaggtccatttattgaccattacact
atggagaaaaatttaagaaccaatcaaaatacaaattatattcaacaccctattgttaaa
aaaggtgatatagtaaaagcaggacaaattatcgcagatggtccttctatggatcaaggc
gaacttgctataggtaaaaatgctttaatcgcttttatgccttggaatggttataactat
gaggatgctatagtagtaagtgaaagaattatacgcgaagatacttttactagtgttcat
atttacgaaaaagaaattgaagcaagagaactaaaagacggtatagaagaaattaccaaa
gatattccaaatgtaaaagaagaagatgttgcgcatcttgatgagagcggtattgcaaaa
attggtacccatattaaaccaggtatgattttggtgggtaaggtttctccaaaaggtgag
gttaaaccaactcctgaagaaagacttttaagagcgatttttggagaaaaagcaggacat
gttgtgaataaatccctttatgcaaccgcttctttagaaggtgttgttgtggatgttaaa
attttcactaaaaaaggctatgaaaaagatgatcgcgcaataaaatcttatgataaagaa
aaaatggctttagaaaaagagcatcatgatagacttttgatgatggatagagaagaaatg
cttcgtgtttgtgctcttctttccaaagcccctttaaatagcgatcaaaaaattggagat
aaaaattataaaaaaggacaaactgcagatattagcgaacttgaaaaaatcaatcgtttt
actttaacaactttgattaaagcttattctaaagagattcaaaaagaatacgatgattta
aaaaatcatttccaaaatgagaagaaaaagcttaaagctgaacatgatgaaaaacttgaa
attttagaaaaagatgatatcttaccaagtggagtaattaagcttgttaaggtgtatatc
gcaacaaaacgcaagcttaaagtgggtgataaaatggcaggacgccatggaaacaaaggt
atagtttctactatagtacctgaagtggatatgccttatttgccaaatggaaaaagtgtg
gatattgcactcaatccacttggggttccaagccgtatgaatatagggcaaattttagaa
agccacttaggtcttgtagggcttagactgggtgatcaaattcaagaaatttttgacaga
aaacaaaaagatttcgttaaagaattaagagcaaaaatgcttgaaatatgttctattcca
agacttgtaaatgaaaaagaatttattaaaaatttaagcgatgaagagcttttaaattac
gcaagagattggagcaagggtgttaaatttgcaactcctgttttcgagggagtcaatata
gaagagtttgcaaaactttttgaaatagcaaagattgacatggatggcaaaacagaactt
tatgatgggcgcactggagaaaaaatcgctgagagagttcatgtaggatgtatgtatatg
ctaaaacttcaccatttggtcgatgaaaaagttcatgctagaagtactggaccttatagt
ttggttacccagcagcctgtgggcggtaaagcactctttggtggacaaagatttggtgaa
atggaagtttgggcgcttgaagcttatggagcggctcataccttaagagagatgcttact
ataaaatccgatgatgttgaaggtagatttagtgcttataaagcgcttaccaaaggagaa
aatgtcccagcaacaggaattccggagacattttttgtattgactaatgagcttaagtct
ctagctttagatgttgagatttttgacaaggatgaagataatgagtaa
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integrated database retrieval system
