Clostridium cellulosi: CCDG5_1669
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Entry
CCDG5_1669 CDS
T03806
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ccel
Clostridium cellulosi
Pathway
ccel03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ccel00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CCDG5_1669 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccel03021
]
CCDG5_1669 (rpoB)
03400 DNA repair and recombination proteins [BR:
ccel03400
]
CCDG5_1669 (rpoB)
Enzymes [BR:
ccel01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CCDG5_1669 (rpoB)
Transcription machinery [BR:
ccel03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CCDG5_1669 (rpoB)
DNA repair and recombination proteins [BR:
ccel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CCDG5_1669 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DUF5887
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
CDZ24777
UniProt:
A0A078KQF8
LinkDB
All DBs
Position
I:complement(1784225..1787956)
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AA seq
1243 aa
AA seq
DB search
MVNVTPVELGKNVRMSFSHINEVLDMPNLIEVQKKSYEWFLTQGLKEVLKDVSSITDFTG
NLVLSFVDYRIDDKPKYTVEECKERDATYAAPLHVLARLVNRETGEVKEQEIFMGDFPLM
TDSGTFIINGAERVIVSQLVRSPGVYYGMDHDKTGKKLFTSTVIPNRGAWLEYETDINDV
FYVRIDKNRKIPITVLIRALGLGTDEQILDFFGDDERIKASIEKDNTKSMDEALIEVYRK
LRPGEPPTIESAQAHINALFFDSRRYDLSRVGRYKYNKKLAIGARIMGKTLSRPIVNPMT
GEIMAEAGETLSKAKALEIEKAGVDTVYVDVNGREVKVISNGMVDAKDFVSFDPEEVGIN
EKVRFSVLREILENSKDENEIKEAFKERVDELIPKHIIVDDIFASINYLNCLASDIGTID
DIDHLGNRRVRSVGELLQNQIRIGFSRMERVIRERMNLQSQDMDVVTPQSIINSRPVMAA
IKEFFGSSPLSQFMDQTNPLAELTHKRRLSALGPGGLSRDRAGFEVRDVHYTHYGRMCPI
ETPEGPNIGLISYLASYARINEYGFIEAPYRKVDKETGIVTNEVVYMTADMEDEFIIAQA
NEPLDEEGHFVRPRVAARFRDEILEVEREKVDFMDVSPKMVVSIATAMIPFLENDDANRA
LMGANMQRQAVPLIKTESPIVGTGMEYKAAIDSGVVVLAKEDGVVEKVSAREIVIRTDSG
KMETYHLIKFMRSNQGTCINQRPIVYKGERVKKGQVIADGPSTSQGEISLGRNVLIGFMT
WEGYNYEDAVLLNERLVRDDVYTSIHIEEYEIEARDTKLGPEEITRDIPNVGEDALRDLD
ERGIIRIGAEVRAGDILVGKVTPKGETELTSEERLLRAIFGEKAREVRDTSLRVPHGEYG
IVVDVKVFTKENSEELNPGVNMVVRCYIAQKRKISVGDKMAGRHGNKGVVSRILPQEDMP
FLPDGTPLDVVLNPLGVPSRMNIGQVLEVHLGYAAKALGWKVMTPVFDGAHEEDIAECLR
AAGLREDGKCILYDGRTGEPFDNPVTVGYMYFLKLAHLVDDKIHARSTGPYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYESIVKGQNVPKPGVP
ESFKVLIKELQSLGLDMKVLNKNNEEVDLRNTFDDDNIGIGHIEDMSKVSVDNDFDDGFQ
IGEPEPEPDEDINEEIDTIDFPDGEELEDQDENLGNDFDEFDE
NT seq
3732 nt
NT seq
+upstream
nt +downstream
nt
atggtgaatgtgacgccggtagagcttggcaagaatgtccgaatgagtttttctcacatc
aacgaggttcttgatatgccgaaccttattgaggtgcagaaaaagtcatacgaatggttt
cttacgcagggcttgaaggaagttttaaaagacgtttcttcaattactgacttcaccggc
aaccttgtactcagctttgtcgactacagaattgacgacaaacctaagtacaccgttgaa
gagtgtaaggaacgcgatgccacctatgcggctccgctgcatgtgctcgcaaggctcgta
aatcgtgagactggagaggttaaggaacaggaaatcttcatgggcgactttccgctcatg
accgacagcggtacattcattataaacggtgcggaacgtgtcatagtttcacagttagtt
cgttcaccgggcgtctattacggaatggaccatgacaaaacaggcaaaaagcttttcact
tcaactgtaatcccaaaccgcggcgcgtggcttgaatacgaaaccgacatcaacgatgtt
ttctatgtccgtattgataaaaaccgtaaaattccgattactgttctgatacgcgcactc
ggactcggaacggacgagcagattctcgactttttcggggatgatgaacgtatcaaggca
tctatagaaaaagacaatacaaaatccatggacgaggcgcttatcgaagtttaccgcaag
ctgcgcccgggcgagcctccgacaattgagagcgcacaggcccatatcaacgctttgttc
ttcgacagccgccgttatgacctttcacgtgttggacgttacaaatataataagaagctt
gcaatcggcgcacggataatgggaaaaacgctttcccgccccattgtcaacccgatgaca
ggcgaaataatggctgaagcaggcgaaacactttcgaaggcgaaagcacttgaaattgag
aaagccggcgtcgacaccgtttacgttgatgtaaacggccgtgaagtcaaggttatttca
aacggtatggtcgacgcaaaggattttgtcagcttcgatcctgaggaagtcggaataaac
gaaaaagtgcgtttttccgtgctccgtgagattctcgaaaactccaaagatgagaatgaa
atcaaagaagcgtttaaagaacgtgtagacgagcttattcctaagcatattatcgtagat
gatatctttgcttctataaattatctcaactgccttgccagcgatattggcacaatagac
gatatcgaccatctgggcaaccgcagagtccgcagcgtgggtgaacttctccaaaaccag
atccgtattggtttttcacgtatggagagggttattcgtgagcgcatgaacctccagtcc
caggacatggatgttgtcacgcctcagtcgataatcaactcccgtccggtaatggcggca
atcaaagagttctttggctcctcgccgctgtcacagtttatggaccagacaaacccgctg
gcggaacttacgcacaaacgccgtctttcagctctcggccccggcggcttgtcccgtgat
agagctggattcgaagtccgtgacgtacactacacccattacggacgcatgtgcccaatt
gaaacccctgaaggtcctaacatcggactgatttcctaccttgcgtcttatgcgagaata
aatgagtatggtttcattgaagccccctaccgcaaggttgataaagaaaccggcattgtt
accaacgaagttgtatatatgaccgctgatatggaggatgagttcataatcgcgcaggct
aacgagcctcttgatgaagaggggcatttcgtacggccgcgtgttgctgcccgtttcagg
gatgaaatcctcgaagtcgagcgcgaaaaggtcgacttcatggacgtttctcctaagatg
gtcgtttctatagcaactgctatgattccgttccttgaaaacgacgacgcgaaccgtgcc
ctcatgggtgcaaacatgcagaggcaggctgttccgcttatcaagactgagtctccgatt
gtcggcaccggtatggaatataaggctgccatcgactcaggcgttgttgtccttgctaag
gaagacggcgtggtcgaaaaggtttcggcgcgtgaaatcgttatccgcacggacagcgga
aagatggaaacttatcacctcattaagtttatgcgctctaaccagggcacctgcataaat
cagcgcccgatcgtttataagggcgagcgcgtcaagaagggacaggttatagccgacggc
ccgtcgacaagccaaggcgagatatcactcggacgcaatgtcctcattggctttatgacc
tgggaaggttataactacgaggacgcagttctcctcaacgaaaggcttgtaagagatgac
gtctatacgtcaattcatatagaagaatacgagattgaagcacgtgataccaaactcggt
ccggaagagattacccgcgatattccgaacgtcggtgaggatgcgctgcgcgacctcgac
gaacgcggtattatccgtatcggcgctgaggttcgtgccggagatattctggtcggcaag
gtaacaccaaagggtgaaaccgagcttacttcagaagagcgcctgctgcgtgctatcttc
ggtgaaaaagcccgtgaagtccgcgacacatcgcttcgcgttccgcacggcgaatatgga
atagttgtcgacgtaaaggtatttacaaaagaaaacagcgaggaattaaaccccggagta
aatatggtagttcgctgctatattgctcagaagcgcaaaatctccgtcggtgacaagatg
gcgggacgtcacggaaacaagggtgttgtttcgcgtattcttcctcaggaagatatgccg
ttcctgccggatggcacgccccttgacgttgttcttaacccgctgggcgtaccttcccga
atgaatattggtcaagttcttgaagtccacctcggctatgcagcgaaggcactgggctgg
aaggtgatgacaccggtattcgacggtgcccacgaggaagacatcgctgaatgccttaga
gcagcaggcctgcgggaggacggaaagtgtatactttacgatggacgtaccggcgagccg
tttgacaatcctgttacggttggttatatgtacttcctcaaacttgcccatcttgtcgat
gataaaatccacgcccgttcaacaggcccgtactcacttgttactcagcagccgctcggc
ggtaaggcgcagttcggcggtcagcgtttcggtgaaatggaagtttgggcgctggaagct
tacggcgctgcctataccctgcaggaaatcctgactgtcaagtccgacgacgtggtcgga
agagttaagacctatgaatccattgtcaaaggacagaatgtgccgaaaccgggcgttcct
gaatcgttcaaggttctcatcaaggaacttcagtctcttggccttgacatgaaggtgctc
aacaaaaacaatgaagaggttgatctcagaaatacatttgacgacgataatatcgggatc
ggacatatcgaagatatgtcaaaggtatcagttgacaacgactttgacgacggtttccag
ataggtgaaccggagccagagccggacgaagatatcaacgaggaaatcgatacaattgat
ttccccgacggcgaagaacttgaagatcaggatgaaaacctgggcaatgatttcgatgag
tttgacgaataa
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integrated database retrieval system
