Campylobacter coli RM1875: YSQ_07450
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Entry
YSQ_07450 CDS
T03164
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ccf
Campylobacter coli RM1875
Pathway
ccf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ccf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
YSQ_07450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccf03021
]
YSQ_07450
03400 DNA repair and recombination proteins [BR:
ccf03400
]
YSQ_07450
Enzymes [BR:
ccf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
YSQ_07450
Transcription machinery [BR:
ccf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
YSQ_07450
DNA repair and recombination proteins [BR:
ccf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
YSQ_07450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AHK73773
LinkDB
All DBs
Position
complement(1400195..1404322)
Genome browser
AA seq
1375 aa
AA seq
DB search
MLDNKLRNRLRVDFSNISKQIEIPNLLQLQKASFDYFLNLENGESGIEKVFKSIFPIHDP
QNRLSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIRLTLHEKDEKTGEKVGIKDIKE
QEIYIREIPLMTDRVSFIINGVERVVVNQLHRSPGVIFKEEESSTVVNKLVYTAQIIPDR
GSWLYFEYDAKDVLYVRINKRRKVPVTMLFRALGYKKQDIIKLFYPIQTIHVKKDKFLTE
FNPSDFMDRIEYDIKDEKGNIIHQAGKRLTKKKAEQLIKDGLKWIEYPVEILLNRYLANP
IIDKESGEVLFDSLTLLDESKLAKIKEQKSFEIANDLANGVDAAIINSFAQDNETLKLLK
QSENIDDENDLAAIRIYKVMRPGEPVVKDAAKAFVNDLFFNPERYDLTKVGRMKMNHKLG
LEVPEYVTVLTNEDIIKTAKYLIKVKNGKGHIDDRDHLGNRRIRSIGELLANELHLGLAK
MQKAIRDKFTSLNADLDKVMPYDLINPKMITTTIIEFFTGGQLSQFMDQTNPLSEVTHKR
RLSALGEGGLVKERAGFEVRDVHSTHYGRICPVETPEGQNIGLINTLSTYAKVNELGFVE
APYRKVANGKVTNEVVYLTATQEEGLFIAPASTKVDAKGNIVEEFVEARQDGETILARRE
EVQLIDLCSGMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLTASAPIVGTGMEQII
ARDAWEAVKAKRGGVVEKVDNKSIFILGEDDKGPFIDHYTMEKNLRTNQNTNYIQHPIVK
KGDIVKAGQIIADGPSMDQGELAIGKNALIAFMPWNGYNYEDAIVVSERIIREDTFTSVH
IYEKEIEARELKDGIEEITKDIPNVKEEDVAHLDESGIAKIGTHIKPGMILVGKVSPKGE
VKPTPEERLLRAIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDRAIKSYDKE
KMALEKEHHDRLLMMDREEMLRVCALLSKAPLNSDQKIGDKNYKKGQTADISELEKINRF
TLTTLIKAYSKEIQKEYDDLKNHFQNEKKKLKAEHDEKLEILEKDDILPSGVIKLVKVYI
ATKRKLKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRMNIGQILE
SHLGLVGLRLGDQIQEIFDRKQKDFVKELRAKMLEICSIPRLVNEKEFIKNLSDEELLNY
ARDWSKGVKFATPVFEGVNIEEFAKLFEIAKIDMDGKTELYDGRTGEKIAERVHVGCMYM
LKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLREMLT
IKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDKDEDNE
NT seq
4128 nt
NT seq
+upstream
nt +downstream
nt
atgttagacaataaattaagaaatcgtttaagagtagatttctccaatatttcaaagcaa
atagaaattccaaatcttcttcaacttcaaaaagcaagttttgattattttttaaatctt
gaaaatggtgaaagtggaatagaaaaagtatttaaatcaatctttcctatccatgatcca
caaaataggttaagtcttgagtatgttagtagcgaaattggaaaaccaaaatacacaatt
cgtgagtgcatggaaagaggtttgacttactctgtaaatttaaaaatgaaaatccgtctt
accttacatgagaaagatgagaaaacaggtgaaaaagttggtataaaagatatcaaggaa
caagaaatttatataagagaaattccattgatgacagatagggtttcttttattatcaat
ggggttgaaagagttgtagttaatcagcttcatagaagtccaggcgtaatcttcaaagaa
gaagaaagctcgactgttgttaataagcttgtatacactgctcaaattattcctgatcgc
ggttcttggctttattttgaatatgatgctaaggatgtattgtatgtaaggattaataaa
agaagaaaagttccagtaacaatgctttttagagctttaggatataaaaaacaagatatt
attaaattattttatcctattcagactattcacgttaaaaaagataaatttttaacagaa
tttaatccaagtgattttatggatagaatagaatacgatatcaaggatgaaaagggtaat
attatccatcaagccggtaaaagattaaccaagaaaaaagccgaacagcttattaaagat
ggcttaaaatggatagaatatccagtagaaattttgttaaatcgttatctagccaatcct
attattgataaagaaagtggcgaagttttatttgactctctaactttacttgatgaaagc
aaacttgctaaaattaaagagcaaaaaagttttgaaatagctaatgacttggcaaatgga
gtggatgcagctattattaattcatttgcacaagataatgaaactttaaaattattaaaa
caaagtgaaaatatcgatgatgaaaatgatttagcagctattagaatttataaagtaatg
cgcccaggtgagcctgttgtaaaagatgcggctaaagcctttgttaatgatttatttttt
aatcctgaaagatatgatcttactaaagtaggtcgtatgaaaatgaaccataaactagga
cttgaagttccagaatatgtaacagttctaaccaatgaagacattatcaaaactgcaaaa
tatttaattaaagtaaaaaatggtaaaggacatattgatgatagagatcatttaggaaat
cgtcgtatacgttctataggtgaacttttagctaatgaacttcatttaggtcttgcaaaa
atgcaaaaggcgatcagagataaatttacttctttaaatgcggatcttgataaagtaatg
ccttatgatttaatcaatcctaaaatgattactacaactatcattgaattttttacagga
ggtcagctttcgcaatttatggatcaaaccaaccctttaagcgaggttactcataagcgt
cgtttatcagcgcttggtgaaggtggacttgtaaaagaaagagcaggttttgaagtacgt
gatgttcactcgacacattatggtagaatttgtccagttgaaacacctgaaggtcaaaat
attggtttgattaacactctttctacttatgcaaaagtaaatgaacttggctttgttgaa
gcaccatatagaaaagttgcaaatggtaaagtgactaatgaagttgtttatcttacagcg
acacaagaagaaggcttgtttatcgcaccagcttcaactaaggttgatgctaaaggcaat
atagtagaagaatttgttgaggctagacaagatggtgaaactatacttgcaagacgcgaa
gaagtgcaattaatcgatctttgctcaggtatggttgttggagttgcagcttctttgatt
ccgtttttagagcacgatgatgcaaacagagcgctaatgggttcaaacatgcaacgtcaa
gctgtgccacttcttactgcttcagctccgatagtaggaacaggtatggaacaaattatt
gcgcgtgatgcttgggaagctgttaaagcaaagcgtggcggtgtggttgagaaagtggat
aataaaagcatttttattttaggtgaagatgataaaggtccatttattgaccattacact
atggagaaaaatttaagaaccaatcaaaatacaaattatattcaacaccctattgttaaa
aaaggtgatatagtaaaagcaggacaaattatcgcagatggtccttctatggatcaaggc
gaacttgctataggtaaaaatgctttaatcgcttttatgccttggaatggttataactat
gaggatgctatagtagtaagtgaaagaattatacgcgaagatacttttactagtgttcat
atttacgaaaaagaaattgaagcaagagaactaaaagacggtatagaagaaattaccaaa
gatattccaaatgtaaaagaagaagatgttgcgcatcttgatgagagcggtattgcaaaa
attggtacccatattaaaccaggtatgattttggtgggtaaggtttctccaaaaggtgag
gttaaaccaactcctgaagaaagacttttaagagcgatttttggagaaaaagcaggacat
gttgtgaataaatccctttatgcaaccgcttctttagagggtgttgttgtggatgttaaa
attttcactaaaaaaggctatgaaaaagatgatcgcgcaataaaatcttatgataaagaa
aaaatggctttagaaaaagaacatcatgatagacttttgatgatggatagagaagaaatg
cttcgtgtttgtgctcttctttccaaagcccctttaaatagcgatcaaaaaattggagat
aaaaattataaaaaaggacaaactgcagatattagcgaacttgaaaaaatcaatcgtttt
actttaacaactttgattaaagcttattctaaagagattcaaaaagaatacgatgattta
aaaaatcatttccaaaatgagaagaaaaagcttaaagctgaacatgatgaaaaacttgaa
attttagaaaaagatgatatcttaccaagtggagtaattaagcttgttaaggtgtatatc
gcaacaaaacgcaagcttaaagtgggcgataaaatggcaggacgccatggaaacaaaggt
atagtttctactatagtacctgaagtggatatgccttatttgccaaatggaaaaagtgtg
gatattgcactcaatccacttggggttccaagccgtatgaatatagggcaaattttagaa
agccacttaggtcttgtagggcttagactgggtgatcaaattcaagaaatttttgacaga
aaacaaaaagatttcgttaaagaattaagagcaaaaatgcttgaaatatgttctattcca
agacttgtaaatgaaaaagaatttattaaaaatttaagcgatgaagagcttttaaattac
gcaagagattggagcaagggtgttaaatttgcaactcctgttttcgagggagtcaatata
gaagagtttgcaaaactttttgaaatagcaaagattgacatggatggcaaaacagaactt
tatgatgggcgcactggagaaaaaatcgctgagagagttcatgtaggatgtatgtatatg
ctaaaacttcaccatttggtcgatgaaaaagttcatgctagaagtactggaccttatagt
ttggttacccagcagcctgtgggcggtaaagcactctttggtggacaaagatttggtgaa
atggaagtttgggcgcttgaagcttatggagcggctcataccttaagagagatgcttact
ataaaatccgatgatgttgaaggtagatttagtgcttataaagcgcttaccaaaggagaa
aatgtcccagcaacaggaattccggagacattttttgtattgactaatgagcttaagtct
ctagctttagatgttgagatttttgacaaggatgaagataatgagtaa
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integrated database retrieval system