KEGG   Campylobacter coli RM1875: YSQ_07450
Entry
YSQ_07450         CDS       T03164                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
ccf  Campylobacter coli RM1875
Pathway
ccf03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ccf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    YSQ_07450
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ccf03021]
    YSQ_07450
   03400 DNA repair and recombination proteins [BR:ccf03400]
    YSQ_07450
Enzymes [BR:ccf01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     YSQ_07450
Transcription machinery [BR:ccf03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     YSQ_07450
DNA repair and recombination proteins [BR:ccf03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      YSQ_07450
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 RnfC_N
Other DBs
NCBI-ProteinID: AHK73773
LinkDB
Position
complement(1400195..1404322)
AA seq 1375 aa
MLDNKLRNRLRVDFSNISKQIEIPNLLQLQKASFDYFLNLENGESGIEKVFKSIFPIHDP
QNRLSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIRLTLHEKDEKTGEKVGIKDIKE
QEIYIREIPLMTDRVSFIINGVERVVVNQLHRSPGVIFKEEESSTVVNKLVYTAQIIPDR
GSWLYFEYDAKDVLYVRINKRRKVPVTMLFRALGYKKQDIIKLFYPIQTIHVKKDKFLTE
FNPSDFMDRIEYDIKDEKGNIIHQAGKRLTKKKAEQLIKDGLKWIEYPVEILLNRYLANP
IIDKESGEVLFDSLTLLDESKLAKIKEQKSFEIANDLANGVDAAIINSFAQDNETLKLLK
QSENIDDENDLAAIRIYKVMRPGEPVVKDAAKAFVNDLFFNPERYDLTKVGRMKMNHKLG
LEVPEYVTVLTNEDIIKTAKYLIKVKNGKGHIDDRDHLGNRRIRSIGELLANELHLGLAK
MQKAIRDKFTSLNADLDKVMPYDLINPKMITTTIIEFFTGGQLSQFMDQTNPLSEVTHKR
RLSALGEGGLVKERAGFEVRDVHSTHYGRICPVETPEGQNIGLINTLSTYAKVNELGFVE
APYRKVANGKVTNEVVYLTATQEEGLFIAPASTKVDAKGNIVEEFVEARQDGETILARRE
EVQLIDLCSGMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLTASAPIVGTGMEQII
ARDAWEAVKAKRGGVVEKVDNKSIFILGEDDKGPFIDHYTMEKNLRTNQNTNYIQHPIVK
KGDIVKAGQIIADGPSMDQGELAIGKNALIAFMPWNGYNYEDAIVVSERIIREDTFTSVH
IYEKEIEARELKDGIEEITKDIPNVKEEDVAHLDESGIAKIGTHIKPGMILVGKVSPKGE
VKPTPEERLLRAIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDRAIKSYDKE
KMALEKEHHDRLLMMDREEMLRVCALLSKAPLNSDQKIGDKNYKKGQTADISELEKINRF
TLTTLIKAYSKEIQKEYDDLKNHFQNEKKKLKAEHDEKLEILEKDDILPSGVIKLVKVYI
ATKRKLKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRMNIGQILE
SHLGLVGLRLGDQIQEIFDRKQKDFVKELRAKMLEICSIPRLVNEKEFIKNLSDEELLNY
ARDWSKGVKFATPVFEGVNIEEFAKLFEIAKIDMDGKTELYDGRTGEKIAERVHVGCMYM
LKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLREMLT
IKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDKDEDNE
NT seq 4128 nt   +upstreamnt  +downstreamnt
atgttagacaataaattaagaaatcgtttaagagtagatttctccaatatttcaaagcaa
atagaaattccaaatcttcttcaacttcaaaaagcaagttttgattattttttaaatctt
gaaaatggtgaaagtggaatagaaaaagtatttaaatcaatctttcctatccatgatcca
caaaataggttaagtcttgagtatgttagtagcgaaattggaaaaccaaaatacacaatt
cgtgagtgcatggaaagaggtttgacttactctgtaaatttaaaaatgaaaatccgtctt
accttacatgagaaagatgagaaaacaggtgaaaaagttggtataaaagatatcaaggaa
caagaaatttatataagagaaattccattgatgacagatagggtttcttttattatcaat
ggggttgaaagagttgtagttaatcagcttcatagaagtccaggcgtaatcttcaaagaa
gaagaaagctcgactgttgttaataagcttgtatacactgctcaaattattcctgatcgc
ggttcttggctttattttgaatatgatgctaaggatgtattgtatgtaaggattaataaa
agaagaaaagttccagtaacaatgctttttagagctttaggatataaaaaacaagatatt
attaaattattttatcctattcagactattcacgttaaaaaagataaatttttaacagaa
tttaatccaagtgattttatggatagaatagaatacgatatcaaggatgaaaagggtaat
attatccatcaagccggtaaaagattaaccaagaaaaaagccgaacagcttattaaagat
ggcttaaaatggatagaatatccagtagaaattttgttaaatcgttatctagccaatcct
attattgataaagaaagtggcgaagttttatttgactctctaactttacttgatgaaagc
aaacttgctaaaattaaagagcaaaaaagttttgaaatagctaatgacttggcaaatgga
gtggatgcagctattattaattcatttgcacaagataatgaaactttaaaattattaaaa
caaagtgaaaatatcgatgatgaaaatgatttagcagctattagaatttataaagtaatg
cgcccaggtgagcctgttgtaaaagatgcggctaaagcctttgttaatgatttatttttt
aatcctgaaagatatgatcttactaaagtaggtcgtatgaaaatgaaccataaactagga
cttgaagttccagaatatgtaacagttctaaccaatgaagacattatcaaaactgcaaaa
tatttaattaaagtaaaaaatggtaaaggacatattgatgatagagatcatttaggaaat
cgtcgtatacgttctataggtgaacttttagctaatgaacttcatttaggtcttgcaaaa
atgcaaaaggcgatcagagataaatttacttctttaaatgcggatcttgataaagtaatg
ccttatgatttaatcaatcctaaaatgattactacaactatcattgaattttttacagga
ggtcagctttcgcaatttatggatcaaaccaaccctttaagcgaggttactcataagcgt
cgtttatcagcgcttggtgaaggtggacttgtaaaagaaagagcaggttttgaagtacgt
gatgttcactcgacacattatggtagaatttgtccagttgaaacacctgaaggtcaaaat
attggtttgattaacactctttctacttatgcaaaagtaaatgaacttggctttgttgaa
gcaccatatagaaaagttgcaaatggtaaagtgactaatgaagttgtttatcttacagcg
acacaagaagaaggcttgtttatcgcaccagcttcaactaaggttgatgctaaaggcaat
atagtagaagaatttgttgaggctagacaagatggtgaaactatacttgcaagacgcgaa
gaagtgcaattaatcgatctttgctcaggtatggttgttggagttgcagcttctttgatt
ccgtttttagagcacgatgatgcaaacagagcgctaatgggttcaaacatgcaacgtcaa
gctgtgccacttcttactgcttcagctccgatagtaggaacaggtatggaacaaattatt
gcgcgtgatgcttgggaagctgttaaagcaaagcgtggcggtgtggttgagaaagtggat
aataaaagcatttttattttaggtgaagatgataaaggtccatttattgaccattacact
atggagaaaaatttaagaaccaatcaaaatacaaattatattcaacaccctattgttaaa
aaaggtgatatagtaaaagcaggacaaattatcgcagatggtccttctatggatcaaggc
gaacttgctataggtaaaaatgctttaatcgcttttatgccttggaatggttataactat
gaggatgctatagtagtaagtgaaagaattatacgcgaagatacttttactagtgttcat
atttacgaaaaagaaattgaagcaagagaactaaaagacggtatagaagaaattaccaaa
gatattccaaatgtaaaagaagaagatgttgcgcatcttgatgagagcggtattgcaaaa
attggtacccatattaaaccaggtatgattttggtgggtaaggtttctccaaaaggtgag
gttaaaccaactcctgaagaaagacttttaagagcgatttttggagaaaaagcaggacat
gttgtgaataaatccctttatgcaaccgcttctttagagggtgttgttgtggatgttaaa
attttcactaaaaaaggctatgaaaaagatgatcgcgcaataaaatcttatgataaagaa
aaaatggctttagaaaaagaacatcatgatagacttttgatgatggatagagaagaaatg
cttcgtgtttgtgctcttctttccaaagcccctttaaatagcgatcaaaaaattggagat
aaaaattataaaaaaggacaaactgcagatattagcgaacttgaaaaaatcaatcgtttt
actttaacaactttgattaaagcttattctaaagagattcaaaaagaatacgatgattta
aaaaatcatttccaaaatgagaagaaaaagcttaaagctgaacatgatgaaaaacttgaa
attttagaaaaagatgatatcttaccaagtggagtaattaagcttgttaaggtgtatatc
gcaacaaaacgcaagcttaaagtgggcgataaaatggcaggacgccatggaaacaaaggt
atagtttctactatagtacctgaagtggatatgccttatttgccaaatggaaaaagtgtg
gatattgcactcaatccacttggggttccaagccgtatgaatatagggcaaattttagaa
agccacttaggtcttgtagggcttagactgggtgatcaaattcaagaaatttttgacaga
aaacaaaaagatttcgttaaagaattaagagcaaaaatgcttgaaatatgttctattcca
agacttgtaaatgaaaaagaatttattaaaaatttaagcgatgaagagcttttaaattac
gcaagagattggagcaagggtgttaaatttgcaactcctgttttcgagggagtcaatata
gaagagtttgcaaaactttttgaaatagcaaagattgacatggatggcaaaacagaactt
tatgatgggcgcactggagaaaaaatcgctgagagagttcatgtaggatgtatgtatatg
ctaaaacttcaccatttggtcgatgaaaaagttcatgctagaagtactggaccttatagt
ttggttacccagcagcctgtgggcggtaaagcactctttggtggacaaagatttggtgaa
atggaagtttgggcgcttgaagcttatggagcggctcataccttaagagagatgcttact
ataaaatccgatgatgttgaaggtagatttagtgcttataaagcgcttaccaaaggagaa
aatgtcccagcaacaggaattccggagacattttttgtattgactaatgagcttaagtct
ctagctttagatgttgagatttttgacaaggatgaagataatgagtaa

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