Clostridium chauvoei: BTM20_01125
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Entry
BTM20_01125 CDS
T05083
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cchv
Clostridium chauvoei
Pathway
cchv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cchv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BTM20_01125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cchv03021
]
BTM20_01125
03400 DNA repair and recombination proteins [BR:
cchv03400
]
BTM20_01125
Enzymes [BR:
cchv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BTM20_01125
Transcription machinery [BR:
cchv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BTM20_01125
DNA repair and recombination proteins [BR:
cchv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BTM20_01125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
DUF4369
Motif
Other DBs
NCBI-ProteinID:
ATD53930
UniProt:
A0ABD4RGY8
LinkDB
All DBs
Position
231988..235698
Genome browser
AA seq
1236 aa
AA seq
DB search
MVHPVQVGKRTRMSFGKVKDVTEMPNLIEVQLDSYQWFLKEGLHEVFDDVNPITNFTGNL
VLEFIDYKLDMENIKYSVEECKERDATYAAPLKVSVRLQNNETGEIKEQEVFMGDFPLMT
EQGTFIINGAERVIVSQLVRSPGVYYNYSVDKTGKKLYSSTVIPNRGAWLEYETDSNDII
YVRIDKTRKLPISILGRAMGLGSDQELLEYFGEDERFKATIEKDNTKTKEEALLEIYKRL
RPGEPPTVDSAISLIDSLFFDAKRYDLSRVGRYKFNKKLALNLRLVNQVAAEDIVNPQTG
EIMVEQGQKISRSLAEEIQNVGINSVDILVEDRVLKVIGNHFVDITKHISFNIDDLNIKE
LVHYPTLKEILDNYDDEATIKEEIKRNINRLIPKHIIREDIFATISYELGLPYEIGYVDD
IDHLGNRRLRSVGELLQNQFRIGLSRMERVVKERMTIQDQESITPQMLINIRPVAAAIKE
FFGSSQLSQFMDQTNPLSELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETP
EGPNIGLINSLATYAKVNEYGFIETPYRVIDKEKGIITDEIRYFTADEEDQYLVAQAKEP
IGENRKFVDSRVTVRFKHEVLVVNAEEVDLIDVSPRQIVSVATAMIPFLENDDASRALMG
SNMQRQAVPLLKPQAPIVGTGIEFKAAVDSGVLPKAKNAGTVVYVSASEIRIKRELDGGI
DTYKLLKFKRSNQGTCINQRPLVDKGEIVFKNQVLADGPSTDLGEISLGKNIRMGFITWE
GYNYEDAMLISEELVREDVFTSIHIEEYECEARDTKLGPEEITRDIPNVSEDALKDIDDR
GIIRIGAEVRSGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGESGII
VDVKVFTRENGDELNPGVNELVRCYIAQKRKISVGDKMAGRHGNKGVISRVLPEEDMPFL
PDGRPLQICLNPLGVPSRMNIGQVLEVHLGWAASQLGWHIATPVFDGATENDIEECLEKA
GYNANGKTVLYDGRTGEAFDNLVTVGIMYILKLAHLVDDKIHARSTGPYSLVTQQPLGGK
AQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDVVGRVKTYEAIVKGENIPEPGVPES
FKVLIKELQALCLDVRVLNDENQEVKLKEFADEDMADLEVNIEGTEELVTSETSNGDDSY
TVVEEEIEEDVEFENFPLDGFHEEELELDDFVNDEH
NT seq
3711 nt
NT seq
+upstream
nt +downstream
nt
atggtacatcctgtccaagttggaaaaagaactagaatgagttttggtaaggttaaagac
gtaactgaaatgccaaatcttattgaagtacaattagattcttatcagtggtttttaaag
gaaggtcttcatgaagtatttgatgacgttaatccgataacaaactttactggaaatcta
gtacttgaatttattgactataaacttgatatggaaaatattaagtactcagtggaagag
tgtaaggaaagagacgcaacttatgctgcaccattaaaagtttcagtaagattacaaaat
aatgaaactggagaaattaaagaacaagaagtatttatgggtgatttcccactaatgact
gaacaaggaactttcatcataaacggtgctgaaagagtaattgttagccaattagtaaga
tcaccaggtgtttattacaattatagtgttgataagactggtaaaaagttatattcatca
actgtaattcctaacagaggtgcttggttagaatatgaaacagattctaacgatattatc
tatgtaagaatagataaaacaagaaaacttccaatatctatattaggaagagctatggga
cttggaagtgatcaagaacttttagagtactttggtgaagatgaaagatttaaggcaacg
attgaaaaagataatacaaagactaaagaagaagccttattagaaatctataaaagatta
agaccaggcgaaccacctacagttgatagtgctatatctctaatagattcattattcttt
gacgcaaagagatatgatttatcaagagttggtagatacaaattcaacaaaaagttggca
ctaaacttaagacttgttaatcaagtagctgcagaagacatagttaatcctcaaacagga
gaaattatggttgagcaaggccaaaaaattagcagaagtttagctgaagaaattcaaaat
gtaggtattaattcagtagatattttagtagaagatagagtattaaaagtaataggtaat
cactttgttgatattactaaacatatttcatttaatattgatgacttaaatattaaagaa
ttagttcactatcctactttaaaagaaatacttgataattatgatgatgaagcaactata
aaagaagaaataaagagaaacataaacagattaattcctaaacatataataagagaagat
atttttgctacaataagctatgaattaggattaccttatgaaataggatatgtagatgat
atcgatcatttaggaaacagaagattaagatctgttggagagttattacaaaatcaattt
agaattggtttatcaagaatggaaagagtagttaaggaaagaatgactattcaagaccaa
gaatcaataactccgcaaatgttaattaatattagaccagttgctgcagctattaaagaa
ttctttggtagttcacaattgtctcaattcatggatcaaacaaatccattatcagaatta
acacataagagaagattatcagctttaggaccaggaggtctttcaagagaaagagctggt
ttcgaagtaagagacgttcaccattcacattatggtagaatgtgtcctatagaaacgcca
gaaggtccaaatataggattaatcaactcacttgcaacatatgcaaaagtaaatgaatat
ggatttatagaaactccatatagagttatagataaagaaaaaggtattattacagatgaa
attagatactttactgctgatgaagaagatcaatatctagttgctcaagctaaagaacct
attggtgaaaatagaaagttcgttgatagcagagttacagtaagatttaagcatgaagta
ttagttgttaatgcagaagaagtagatttaattgatgtttcaccaagacaaatcgtttct
gtagcaacagctatgatacctttccttgaaaatgatgatgcatctagagcactgatgggt
tcaaacatgcaacgtcaagcagttccattattaaagccacaagctccaatagtaggtact
ggtatagaatttaaggcagctgtagattcaggagttcttccaaaggctaagaatgctggt
acagttgtttatgtaagcgcaagcgaaataagaataaaaagagaattagatggtggtata
gatacttataaacttctaaaattcaagagaagtaaccaaggtacttgtattaaccaaaga
ccattagttgataaaggtgaaatagtatttaaaaaccaagtattagctgatggaccatca
actgatttaggagaaatatcattaggtaaaaacatcagaatgggctttataacttgggaa
ggttataactacgaagatgctatgttaatctctgaagaattagttagagaagatgtattt
acttcaattcatatagaagaatatgaatgtgaagcgagagatacaaagttaggaccggaa
gaaataactagagatattccaaatgtaagtgaagatgctttaaaggatatagatgataga
ggaataatcagaatcggtgcagaagttagatcaggagatatacttgttggtaaagtaaca
ccaaagggtgaaactgaattaacagcagaagaaagattattaagagctatattcggtgaa
aaagcaagagaagttagagatacatctttaagagttcctcatggagaatctggaataata
gtagacgttaaagtgtttactagagaaaacggtgatgaattaaatccaggagttaatgaa
ttagtaagatgttatatagctcaaaagagaaagatatctgtaggggataagatggctgga
cgtcatggtaataaaggggttatctcaagagtattacctgaagaagatatgccattctta
ccagatggtagaccactacaaatatgcttaaacccactaggggttccatcacgtatgaat
atcggtcaggttcttgaagttcacttaggttgggctgcaagtcaattaggttggcatatt
gcaacaccagtatttgatggcgcaactgaaaatgatatagaggaatgtcttgaaaaggca
ggatataatgcgaatggaaaaactgtattatatgatggtagaacaggagaagcatttgat
aatcttgttaccgtaggtataatgtatatcttaaaacttgcccatctagttgatgataag
atacatgctagatcaacaggaccatactcactagtaactcaacaaccacttggaggtaaa
gctcaatttggtggtcaaagattcggtgaaatggaagtttgggcactagaagcatatggt
gcagcgcatacactacaagaaatattaactgttaagtcagatgatgttgtaggtagagta
aaaacatatgaagctatagttaagggtgaaaatattcctgaaccaggagttccagaatca
ttcaaggttctaattaaagaacttcaagctttatgtttagacgttagagtattaaacgac
gaaaatcaagaagttaaattaaaagaatttgctgatgaagatatggcagatttagaagtt
aacatagaaggtacagaagaactagtaacaagtgaaacttcaaatggagatgacagttac
actgttgttgaagaagaaattgaagaggatgttgaatttgaaaacttcccattagatgga
ttccatgaagaagagttagaacttgatgattttgtaaatgatgaacactaa
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