Cinclus cinclus (white-throated dipper): 134041679
Help
Entry
134041679 CDS
T10813
Symbol
COL9A1
Name
(RefSeq) collagen alpha-1(IX) chain
KO
K08131
collagen type IX alpha
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic04510
Focal adhesion
ccic04512
ECM-receptor interaction
ccic04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134041679 (COL9A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
134041679 (COL9A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
134041679 (COL9A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ccic00535
]
134041679 (COL9A1)
Proteoglycans [BR:
ccic00535
]
Extracellular matrix (ECM) proteoglycans
Others
134041679 (COL9A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
134041679
NCBI-ProteinID:
XP_062344553
LinkDB
All DBs
Position
3:complement(28746754..28809152)
Genome browser
AA seq
919 aa
AA seq
DB search
MKSHWKITAFFYLCSFLWSFISATIQHQSRLPAILGASHRIDICPTIRIGQDDLPGFDLI
SQFQIEKAASQGIIERVVGSTSLQVAYKLGPNVDFRIPTSAIYSNGLPDEYSFLTTFRMT
GATLQKYWTIWQIQDSSGKEQVGVNLNGQVKSVEFSYKGADGKHQTASFLHLPFLFDSQW
HKLMIIVEANSVTLFIDCIKIESLNIKPKGKINTDGFAVLGKLKNNPQISVPFEIQWMVI
HCDPLRPQREGCGELPARVTQTGVERGPPGPPGPPGPPGPPGVPGIDGIDGERGPKGPPG
PPGPDGDAGKPGSPGLPGEPGADGFTGPDGSRGAPGPKGQKGEPGLPGARGLPGKGILGP
PGPAGAAGLPGEVGRAGPPGDPGKRGPPGLPGPPGPPGTIGLQDGDLLCPSACPPGRPGH
AGLMGMKGQKGAKGESGEPGKQGYKGEEGDQGPNGEVGAQGPPGILGIRGITGIMGPKGT
KGARGLDGDPGPQGLPGAPGDQGQRGPLGETGPKGERGPQGTRGINGLPGPKGEPGLPGV
DGREGIPGMPGAKGEPGKPGAPGDTGLQGLPGFPGSPGMKGIPGPKGNRGPPGVPGLMGN
PGKQGQQGPEGEAGPTGPQGPPGSRGETGPAGPPGLPGKLGPQGNIGLPGLPGPPGLPGG
KGDRGSVGEPGPKGEQGAPGAEGDGGEKGDLGDMGLPGAKGAAGNPGDPGSRGPEGSRGL
PGMEGPRGSPGPRGLQGEQGAPGLPGSEGPAGKEPSDQHIKQVCMRVMQEQLAQLAASLR
RPEFGAPGLPGRPGPPGAPGPAGENGFPGQLGPRGLPGLKGPPGEIGRKGPKGEPGERGE
RGFPGRGLKGHPGPRGLPGEPGKASYGREGRDGDRGPPGVAGQPGVPGPPGPPGPPGYCE
PASCRMQAGQRAGKNMKGP
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagccactggaaaattacagctttcttttacctgtgtagttttctgtggtctttc
atctcagccaccatccagcaccaatcaagactacctgctattctgggtgccagtcacaga
attgatatctgcccaacaatcaggattggccaagatgatttaccaggctttgacctgatt
tctcagtttcaaatagaaaaagctgcttcccaaggcattattgaaagagtagtgggatcc
acttctctacaagtagcttataaactgggacccaatgtagacttcaggataccaaccagt
gccatatattccaatggattgcctgatgaatattcctttctaactacttttcgaatgact
ggggccacacttcagaaatactggactatttggcagatccaggattcttcaggaaaagaa
caagttggagtgaatctcaatggtcaagtgaaaagcgttgagttttcttataaaggagca
gacggaaaacaccaaacagcatcatttttacatttgcctttcttgtttgactcccaatgg
cacaagcttatgataattgtggaagcaaacagtgtcacactttttattgactgtattaaa
atagaatccttaaacattaaaccaaaagggaaaatcaacactgatggctttgctgtgctt
ggaaaacttaaaaataatcctcaaatttcagttccgttcgagatccagtggatggtgatc
cactgcgaccccctgcgaccccagcgcgaaggctgcggcgagctgccggctcgggtaacc
cagacgggagtcgagagaggtccccctggtccaccaggccccccaggtccacctgggcca
ccaggagttcccggtattgatggcattgatggggagagaggcccaaagggcccccctggt
ccaccgggtccagatggggatgcaggcaaaccaggatcccctgggttgcctggagagccg
ggagctgatggattcacaggacctgacggctcacgtggtgccccaggaccaaaaggacag
aagggggagccaggattgccaggtgctcgtggacttccaggcaaggggattcttggacca
cctggtccagctggtgcagcaggacttcctggagaagtaggtcgtgctggtccaccagga
gatccaggaaaaagagggccaccagggctaccaggacctccaggtcctccgggaacgatt
ggcctgcaagacggcgacctgttgtgtcccagtgcttgtccgcctggccgtccaggacat
gctggcttaatgggtatgaagggtcaaaaaggtgcaaaaggagagtctggtgagccagga
aagcaaggttataagggggaagaaggggaccaagggcccaatggtgaagtgggagctcaa
ggccctccaggcattctaggtatcagaggtataactggtattatgggacctaagggtacc
aaaggagcacgtggtcttgatggtgatcctggtccccaaggtcttcctggtgcacctggg
gatcaaggacagagaggtccactaggggagacaggtccaaagggagaaaggggtcctcaa
ggtacaagaggaataaatggcctccctgggcctaaaggagagcctggcttaccaggagtt
gatggccgtgaagggatccctggaatgcctggagctaaaggtgaaccaggaaaacctggt
gctccaggtgatacagggctccagggattgccaggtttcccaggctctccaggtatgaaa
ggcattcctggcccaaagggtaatagaggtcctcctggggtgccagggttaatgggaaat
cctggtaaacagggtcaacagggcccagagggagaagcaggtccaacaggaccccaggga
ccaccaggtagcagaggggagacaggtcctgcaggtcctccaggtttaccagggaagttg
ggtccccagggtaatattggacttcctggactgcctggtcctccaggccttcctggtggt
aaaggtgaccggggctccgtgggtgaaccaggacctaagggtgaacaaggtgcacctgga
gcagaaggagatggaggagaaaagggtgacttaggtgacatgggattaccaggagcaaag
ggagctgctggtaatcctggagaccctggttcccgcgggcctgagggaagtcggggactg
cctggaatggaagggccacgagggtcacctggaccacgaggcttgcagggtgagcagggt
gccccaggcctgcctggcagcgaaggtccagctggaaaagaaccaagcgatcagcacata
aagcaggtttgcatgagagtcatgcaagaacaactagcccagttggcagccagccttcgg
aggccagaatttggtgctccaggtcttcctggacgaccagggccaccaggtgctccagga
cctgctggtgaaaatggtttcccaggacagcttggcccccgtggtctgcctggccttaaa
ggtccccctggtgagattggtcgtaaaggtcctaaaggtgaaccaggagaaagaggagaa
agaggatttccaggcagaggactgaaaggtcatcctggaccaagaggtcttccaggtgag
ccgggcaaagccagctacggcagggaaggccgtgacggtgaccgaggtccccctggggtg
gccgggcagcctggggtccctggtccccctggccctcctggccctcccgggtactgcgag
ccagcgtcctgcaggatgcaggcaggacagagagcagggaagaacatgaaagggccctga
DBGET
integrated database retrieval system
