Cinclus cinclus (white-throated dipper): 134047227
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Entry
134047227 CDS
T10813
Name
(RefSeq) sodium channel protein type 2 subunit alpha-like isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
ccic Cinclus cinclus (white-throated dipper)
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ccic04040
]
134047227
Ion channels [BR:
ccic04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
134047227
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
ATP-synt_B
IQ
Motif
Other DBs
NCBI-GeneID:
134047227
NCBI-ProteinID:
XP_062354217
LinkDB
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Position
9:11151782..11203443
Genome browser
AA seq
2017 aa
AA seq
DB search
MAQALLVPPGPESFRYFTRDSLAAIEKRSAEEKAKKPKQEHTDDDDENGPKPNSDLEAGK
TLPFIYGDIPPGMVSEPLEDLDPYYINKKTFIVLNKGKAIFRFSATSALYILTPFNPIRK
IAIKILVHSLFSMLIMCTILTNCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKILARGFC
LEGFTFLRDPWNWLDFSVILMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGA
LIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCLQWPPDNSTFEINIISYFNSTM
NENGTFVNMTVSTFNWKDYIEDETHFYILEGQRDALLCGNSSDAGQCPEGYICVKAGRNP
NYGYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLI
LAVVAMAYEEQNQATMEEAEQKEAEFQQMLEQLKKQQEEAQTTAAVAAASVASRDFSGVG
GLGELLESSSEASKLSSKSAKERRNRRKKRRQKEMSEAEDKGDIDKFPKSESEDSIRRKS
FRFSTEGSQLTYEKRLTSPHQSLLSIRGSLFSPRRNSKTSIFSFRGHAKDIGSENDFADD
EHSTLEDNESRRDSLFVPNRHGERRNSNISQASVSSRMIPALPVNGKMHSTVDCNGVVSL
VGGPSTLTSPTGQLIPEVIVSNPGTTTETEIRKRRLSSYQISMEMMEESAARQRAMSIAS
ILTNTMEELEESRQKCPPCWYRFANTFLIWDCWSPWLKVKHVVNLVVMDPFVDLAITICI
VLNTLFMAMEHYPMTEQFSSVLSVGNLVFTGIFTAEMVLKIIAMDPYYYFQEGWNIFDGI
IVSLSLMELGLANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLA
IIVFIFAVVGMQLFGKSYKECVCKISSDCELPRWHMHDFFHSFLIVFRVLCGEWIETMWD
CMEVAGQTMCLIVFMLVMVIGNLVVLNLFLALLLSSFSSDNLAATDDDNEMNNLQIAVAR
IQKGIDYVKKKIQEFIRKAFVRKQKSLEEIKALEELNNKKDSCISNHTAIEISKDLNYLK
DGNGTTSGVGTGSSVEKYVIDENDYMSFINNPGLTVTVPIALGESDFENLNTEEFSSESD
MEESKQKLNASSSSEGSTVDIAPPGEGEQAEIESEEALEPEACFTEGCVQKFPCCQVSIE
DGKGKTWWNLRKTCYSIVEHNWFETFIVFMILLSSGALAFEDIYIEQRKTIKTMLEYADK
VFTYIFILEMLLKWVAYGFQIYFTNAWCWLDFLIVDVSLVSLIANALGYSELGAIKSLRT
LRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYHCV
NTTTGEMFDISDVNNYTQCVELIKSNQSARWKNVKVNFDNVGAGYLALLQVATFKGWMDI
MYAAVDSRDVKDQPKYEDNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQD
IFMTEEQKKYYNAMKKLGSKKPQKPIPRPVNKFQGMIFDFVTKQVFDISIMILICLNMVT
MMVETDDQSKEMETILSRINLVFIVLFTGEFVLKLISLRHYYFTIGWNIFDFVVVILSIV
GMFLAEMIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLL
FLVMFIYAIFGMSNFAYVKREVGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSG
EPDCDPHKDHPGSSVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFSVATEESA
EPLSEDDFEMFYEVWEKFDPDATQFIEYSKLSDFAASLDPPLLIAKPNKVQLIAMDLPMV
SGDRIHCLDILFAFTKRVLGESGEMDALRIQMEDRFMAANPSKVSYEPITTTLKRKQEEV
SAVIIQRAYRRHLLRLKVKQVSSIYNRNKNKEGDGHSIKEIIIDKLKGNSTPEKTDESSS
TTSPPSYDSVTKPDKEKYEKDKAEKNYKGKDIRENKK
NT seq
6054 nt
NT seq
+upstream
nt +downstream
nt
atggcacaggcactgctggtaccacctggacctgaaagcttccgctattttactagagat
tctctcgcagctattgaaaagcgctctgcagaagaaaaagctaaaaagcccaaacaagaa
catacagatgatgatgatgaaaatggtccaaaaccaaacagtgacttggaggcaggaaag
acactgccatttatttacggtgacatacctccaggaatggtatctgaacctttggaagac
ctggacccatattatatcaataaaaaaactttcatagtattgaataagggaaaagctatt
ttccgattcagtgccacatctgccttgtatattttaactccttttaatcccatcagaaaa
attgctatcaagattttggtacattcattattcagcatgcttatcatgtgcactattttg
accaactgtgtatttatgaccatgagtaaccctccagactggacaaagaatgtagagtac
actttcactggaatttatacctttgaatcacttatcaaaattcttgcaaggggcttctgc
ttagaaggttttacttttctgcgagacccatggaactggcttgacttcagtgtcatttta
atggcatatgtgacagagtttgtggacctgggcaatgtctcagcgttgagaacattcaga
gttctccgagctttgaaaacaatatcagtcattccaggcctgaagactatagtgggagcc
ctgattcagtctgtgaagaagctctcagatgtgatgatcctgactgtgttttgtctgagt
gtatttgcactgatagggctgcagctgttcatgggcaacctgaggaataaatgcctgcag
tggcctccagacaattctacttttgagataaatattatttcctactttaacagcacaatg
aatgaaaacggtacatttgttaacatgacagtgagcacatttaactggaaggattacatt
gaggatgaaactcatttttacattttggaaggacaaagagatgccctactttgtggtaat
agctctgatgcaggacaatgcccagaaggatatatatgtgtgaaagctggcagaaacccc
aactatggctacacaagttttgatacattcagttgggcttttttgtcactgtttcggcta
atgactcaggacttctgggaaaacctctatcagctgacactgcgtgctgctgggaagaca
tacatgatattttttgttctggtgatttttctgggctctttctatctgataaacctgatc
ctggctgtggtcgccatggcctatgaagaacagaatcaagcaacaatggaagaagcagag
cagaaagaggcagaatttcagcaaatgctggaacaactgaagaagcaacaagaagaagct
cagacaacagcagcagtagcagcggcatcagttgcatcaagagatttcagtggtgtaggg
ggattaggagaactcttggaaagctcttcagaagcatcaaagttgagctcaaagagtgct
aaagaaagaagaaacagaaggaagaaaagaagacagaaagaaatgtctgaggcagaggac
aaaggagatatcgataagttccccaagtctgagtcagaagacagtatcagaaggaaaagt
ttccgcttctccacagaaggaagtcaactgacatatgaaaaaaggctcacttctcctcac
cagtctttgttaagcattcgtggttctctgttctcaccaaggcgcaacagcaaaaccagc
attttcagtttcagaggtcatgcaaaggacataggatctgaaaatgactttgctgatgat
gagcacagcactcttgaagacaatgagagcagaagagattctctctttgttccaaatcga
catggagaaaggcgcaacagtaacattagccaggccagtgtgtcctctagaatgatacca
gcccttccagtgaatgggaagatgcacagcactgtggattgcaatggagtggtttccttg
gttggaggaccttcaactctaacttcacctactggtcagcttataccagaggtaattgta
agtaatccaggcaccactacggaaacagaaataaggaaaagaagactgagttcctaccaa
atttccatggaaatgatggaagagtctgctgcaagacaaagagcaatgagcatagccagc
atacttacaaatacaatggaagagcttgaagaatccagacagaaatgcccaccatgctgg
tacagatttgcaaatacattcttgatctgggattgctggagtccatggctaaaagtaaag
catgtcgtcaatttagttgtgatggatccatttgttgatcttgctataacaatttgtatt
gttttaaacactttgtttatggccatggaacattacccaatgacagaacagtttagcagt
gtcctttctgtggggaacctggtattcactgggatatttacagcagaaatggtactaaag
attattgccatggacccttattattatttccaagaaggctggaatattttcgatggtatt
atcgttagccttagtttaatggaacttggtcttgcaaatgttgaaggattatctgttctt
cggtcattcagattgcttcgagttttcaaattggcaaaatcttggccaaccctaaatatg
ctgattaagattattggcaactcagtgggggctctggggaatctgaccctggtgctggcc
atcattgtgttcattttcgctgtggttgggatgcagctgtttgggaaaagctacaaggaa
tgtgtctgcaagatctccagtgactgtgaacttcctcgatggcacatgcatgactttttc
cactctttcctgattgtgttccgagtgctgtgtggagaatggatagaaaccatgtgggac
tgtatggaggttgcaggccaaaccatgtgccttattgttttcatgctggtcatggtgatt
ggaaacctagtggtattgaatctttttctggccttgctgctgagttcatttagttcagac
aacctcgctgctacagatgatgataatgaaatgaacaatctccagattgctgtagcaagg
attcagaagggcatagattatgttaaaaaaaagattcaggagttcatccgaaaagccttc
gttagaaagcagaaatctttagaggaaatcaaagcacttgaagagctaaacaacaagaaa
gacagctgcatttccaatcacactgccattgaaataagcaaagatctgaattatcttaaa
gatgggaatggaaccaccagtggtgtaggcacaggcagcagtgtggaaaaatatgtaatt
gatgaaaacgattacatgtcattcataaacaacccaggcctcactgtgacagtgcccatt
gcacttggagaatcagattttgaaaatttaaatacagaagaatttagcagcgaatctgat
atggaagaaagcaaacagaaactaaatgcatcaagctcatcagaaggcagcactgttgat
attgctcctcctggagagggcgagcaagcagaaattgaaagtgaagaagctcttgaacca
gaagcctgttttactgaaggttgcgtgcagaaatttccatgttgtcaagtaagtatagaa
gatggcaaaggaaaaacttggtggaatcttagaaaaacctgctacagcatagttgaacac
aactggtttgagactttcattgtattcatgattctcctcagcagtggagcactagcattt
gaagatatatatatcgaacaacgcaaaactatcaagaccatgctggaatatgctgacaaa
gtttttacgtatattttcattttggaaatgcttttaaaatgggtagcatatggttttcaa
atatattttactaatgcttggtgctggctggacttcctgattgttgatgtctcattggtt
agtttaatagccaatgctctgggctattcagaacttggtgccattaaatcgctacggaca
ttaagagctttaagacctttaagagccttgtcacgatttgaaggaatgagggtggttgta
aatgcccttgtaggagcaatcccatctatcatgaatgtattgctggtatgtcttatattc
tggctaatcttcagcatcatgggagtaaatctttttgctggaaaattctatcactgtgtc
aacaccacaactggtgagatgtttgatatcagtgatgtcaacaattatactcagtgtgtg
gaactcataaaaagcaatcaaagtgcccgatggaagaatgtgaaagtaaactttgataat
gtaggagctggatatcttgctctgcttcaagtagctactttcaaaggatggatggatatt
atgtatgctgctgttgattcacgagatgtaaaagatcaacctaagtatgaggacaacttg
tatatgtatctctattttgtcatctttatcatatttggatcattttttaccttgaacctt
ttcattggtgttattatagacaacttcaatcaacaaaaaaagaagtttggaggtcaggat
atatttatgacagaagaacagaagaaatattacaatgcaatgaaaaaactgggatccaaa
aagccacagaaacctatacctaggccagtgaacaaattccaaggcatgatctttgatttt
gtaaccaaacaagtatttgacatcagcatcatgatactcatctgccttaacatggtcaca
atgatggtagaaacagatgatcagagtaaagaaatggaaacgattttatcccggattaac
ctggtgttcattgtccttttcactggagaatttgtcctgaaattgatttcacttcgccat
tactacttcactataggctggaatatttttgattttgtggttgtgattctctccatagta
ggtatgtttttggctgagatgattgagaagtactttgtatctcccacactcttcagagtc
atccggctcgccagaatcggtcgaatcctgcgcctcattaaaggcgctaagggaatccgc
actctgctttttgctttgatgatgtctcttcctgctttgttcaacattgggctgctgctc
ttcctggtcatgttcatctacgcgatatttggcatgtccaactttgcctatgtcaagagg
gaagttgggatcgatgacatgttcaactttgaaacgtttggcaacagcatgatctgcctg
tttcagatcaccacgtccgctggctgggacggtttgctcgccccaattctgaacagtggg
gagccagactgtgacccccataaagatcatccggggagctctgtgaaaggtgactgtggc
aacccttctgttgggattttcttctttgtcagctacattatcatatcctttctggtagtg
gtgaacatgtacattgctgtgattttggagaacttcagtgttgctactgaagaaagcgct
gaacccttgagtgaggatgactttgagatgttctatgaagtctgggagaagtttgatccc
gatgcaacacaattcatagaatatagtaaattatcagattttgcagcttcgttagatcca
cctcttctcatagcaaaaccaaacaaagtccagcttattgcaatggatctgcccatggtg
agcggtgacagaattcactgccttgacatcttgtttgctttcacaaagcgtgtcttgggg
gaaagcggggagatggacgccctcagaatacagatggaagatcggtttatggcagccaat
ccttccaaagtctcctatgaaccaattacaaccacactgaaacgaaagcaggaggaggtg
tctgctgtcatcattcagcgtgcttacagacgtcaccttttaaggctaaaagttaaacag
gtgtctagtatatataatagaaataaaaacaaagaaggagatggacacagtataaaagag
ataattattgataaactaaaagggaactccactccagaaaaaacggatgagagttcttct
acaacttccccaccctcttatgacagtgtaacaaagccagacaaagaaaaatatgaaaaa
gacaaagcagaaaagaactacaaaggtaaagacatcagggaaaataaaaaataa
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