Cinclus cinclus (white-throated dipper): 134050936
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Entry
134050936 CDS
T10813
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
134050936 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccic03000
]
134050936 (KDM2B)
04121 Ubiquitin system [BR:
ccic04121
]
134050936 (KDM2B)
03036 Chromosome and associated proteins [BR:
ccic03036
]
134050936 (KDM2B)
Enzymes [BR:
ccic01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
134050936 (KDM2B)
Transcription factors [BR:
ccic03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
134050936 (KDM2B)
Ubiquitin system [BR:
ccic04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
134050936 (KDM2B)
Chromosome and associated proteins [BR:
ccic03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
134050936 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
134050936 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
DUF7885
Cupin_8
JmjC
LRR_4
Motif
Other DBs
NCBI-GeneID:
134050936
NCBI-ProteinID:
XP_062360356
LinkDB
All DBs
Position
17:complement(2877826..2983024)
Genome browser
AA seq
1260 aa
AA seq
DB search
MEAKKDSGRRLRCIGRRRYDENEDLSDVEEIVSIRSFNLEEKLKSKMYHGDFVHAMDGKD
FTFEYVQREALRVPLIFRNKDGLGIKMPDPDFTVRDVKLLVGSRRIVDVMDVNTQRGVEM
SMSQFVRYYETPEAQREKLYNVISLEFSHTKLENIVKRPNVVDLVDWVDNMWPQHLKERQ
TDATNAISEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIPPTLQNL
ELYEEWVLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVFGGNILH
SFNVPMQLRIYEIEDRTRVHAKFRYPFYYEMCWYVLERYVSCVTQRCHLSKEYQKESMLI
DANRKRSTDSYSSDSWLDMDEESCDAHLQEEKDDSLDKNSKSLVDGSSSPNSTHLEGKEA
AGRKQKATVMRYLKRTLSNESDDSVKSTTPTDYPKTPTGSPATEVSTKWTHLTEFELKGL
KALVEKLESLPENKKCVPEGIEDPQALLEDMKNILKEHADDDQNLAISGVPVVSWPKKTT
KNRAVGRPKGKLGAASAVKLAANRSTAGARRRRTRCRKCEACLRTECGECHFCKDMKKFG
GPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEESKFNLMLMECSICNEIIHP
GCLKVKESDGVVNDELPNCWECPKCNHAGKTGKQKRGPGFKYASNLPGSLLKEQKINRDN
KEVPDAAKRKGDCEETPRRKSEEHSKKAPVDSILRRKSDEVHLWRKRKFEKSQEPTMRKR
VRHNPCSPCLSLQRRSWKAPDDRTAMIKPLRRLKQEPEDELPEAPPRSKDSDQSRSSSPT
AGPSTEGAEPRDKKKFKMRRKRRLPNKELSKELSKELNQEIQKTENSLANENHQPIKSEP
ESENEEPKRALNNSERLHRFSKGLNGTPRELRHHQLMPSLRSTPRGIARPPPSLSPPKCI
QMERHVIRPPPISPPPDSLPLDDGAAHVMQREVWMAVFSYLSHRDLCICMRVCKTWNRWC
CDKRLWTKIDLNHCKSITPLMLSGIIRRQPVTLDLSWTNISKKQLSWLINRLPGLRDLLL
SGCSWIAVSALCSSSCPLLRTLDVQWAEGLKDAQMRDLLSPPTDNRPGQIDNRSKLRNIV
ELRLAGLDITDASLRLIIRHMPLLSKLNLSYCNHVTDQSINLLTAVGTTTRDSLTEINLS
DCNKVTDQCLSYFKRCGNICQIDLRYCKQVTKEGCEQFIAEMSVSVQFGQVEEKLLQKLS
NT seq
3783 nt
NT seq
+upstream
nt +downstream
nt
atggaggcaaagaaagactctggaagaagattgcgctgcatcggccgaagacggtacgat
gagaacgaggacctctcggacgtggaagaaattgtcagcatcaggagtttcaatttggaa
gaaaaattaaagagtaaaatgtaccacggggatttcgtgcatgccatggacggcaaagat
tttacttttgagtacgtgcaaagagaagctctcagagtccctctcatcttcagaaataag
gatggactgggaattaaaatgcctgacccagatttcaccgtcagagatgtgaagctatta
gtggggagccgccggatcgtggatgtgatggatgtgaacacccagaggggagttgagatg
agcatgtctcagtttgtgaggtactacgagaccccagaggcccagcgggagaagctctac
aacgtcatcagcctggagttcagtcacaccaaactggagaacattgtcaaacgccccaac
gtggtagacttagtcgactgggtggataatatgtggccacagcacttgaaggagagacag
acggatgctaccaatgctatttcagagatgaaataccccaaagtgaaaaagtactgtttg
atgagtgtgaaaggatgcttcactgattttcatattgattttggtggcacttcagtgtgg
tatcacgttttccgtggggggaagatcttctggctgattccacctactctgcagaatcta
gaactgtatgaagaatgggttctctcaggaaagcaaagtgatatctttctgggagacagg
gtggaacggtgccaaagaattgagctgaaacaaggctacacattcttcattccttcaggg
tggatacacgcggtttatactccagtagattctctggtgtttggtggaaatatcctgcat
agctttaatgttcccatgcagcttcgcatctatgaaattgaggacagaacaagggtgcac
gccaaattccggtatcctttctactatgaaatgtgctggtatgtcctggagagatacgtg
tcctgtgtgacccagcgctgccacctcagcaaagagtaccagaaagaatcaatgttaatt
gatgcaaacagaaaacgcagcacagacagctattcatcagattcttggttagacatggat
gaagaatcttgtgatgcccatctccaggaggagaaggatgacagcttggataagaactct
aaatccttggtggatggctcctcctcacccaacagcacacacttggaagggaaggaggct
gcagggaggaaacaaaaagccacagtaatgaggtacctaaaaagaactttgtctaatgag
tcagatgacagcgtaaaatcaacgaccccgacggactatcccaaaacacccacagggtct
ccagctacagaagtttcaaccaaatggactcacctcacagaatttgaactgaagggtttg
aaagccctggtggaaaagcttgaatctctcccagagaacaagaagtgtgttccggaaggc
attgaagacccgcaggctctcctggaggacatgaagaacatactgaaggaacatgctgat
gatgaccaaaatcttgccatttcgggtgtccctgtggtcagctggcctaagaagaccaca
aagaacagggcagtggggcggcccaaggggaagctgggcgctgcctccgcggtgaagctc
gcggccaaccggagcacggcgggagcgcggcggcggaggacgcgatgccgcaagtgcgag
gcgtgtctgcggacagagtgcggagagtgccacttctgcaaggacatgaagaagttcggg
gggcccggcaggatgaagcagtcctgcatcatgaggcagtgcatagctccagtgctgcct
catactgctgtgtgtctggtgtgtggagaagctgggaaagaggacactgtggaagaggag
gagagcaagtttaatctcatgctaatggaatgctccatttgtaatgaaatcatacaccca
ggatgccttaaggtgaaggaatcggatggtgtggttaacgatgagctgccgaactgctgg
gagtgtccaaagtgcaaccacgcagggaaaactggaaaacaaaagcgcggaccaggattt
aaatacgcatcaaatctcccgggctcgttgctgaaggagcagaaaattaacagagacaac
aaggaagtgccagatgctgccaaaaggaaaggggactgcgaggagactcccaggcggaaa
tctgaggaacattccaaaaaggctccagttgattcaatcctgaggagaaagtctgacgaa
gtgcatctgtggaggaaacggaaattcgagaagtcccaggaacccacgatgagaaagcgg
gtaaggcacaacccctgctccccttgtctctccttgcagcggcggtcgtggaaggccccg
gatgaccgaactgccatgatcaaacccctgcggcgcctcaagcaggagcccgaggatgag
ctgccagaagcaccccccaggtccaaggatagtgaccagtctcggtccagctcacctaca
gcagggcccagcacggagggcgccgagccccgggacaagaagaagttcaagatgaggagg
aaaaggcggcttcccaataaagaactgagcaaggagctcagcaaagagcttaaccaggag
atccaaaaaaccgagaacagccttgccaatgagaaccaccaacccatcaaatctgaaccc
gagagcgagaacgaggaacccaagcgcgcgttgaacaacagcgagagactccataggttc
agcaaagggttgaacgggactccccgggagctgaggcaccaccagctcatgcccagcctg
cgcagcaccccccggggaatagcccggcccccgccctcgctgtcgccccccaagtgcatc
cagatggagcggcacgttatccggccacctcccatcagcccccctccggactcgctcccc
ctggacgatggggcagcccacgtgatgcagagggaagtctggatggctgtctttagctac
ctcagtcatagagacttgtgcatctgtatgagagtttgcaagacctggaacagatggtgc
tgtgacaaaagattatggaccaaaatagatttaaaccattgtaaatccatcactccactt
atgcttagtggcattattaggagacagcctgtaacccttgatcttagctggacaaatata
tctaaaaagcagctgagttggcttatcaacagactgccaggtctgcgggacctgctgtta
tcagggtgctcatggatagcagtgtcggcactttgtagctccagctgtcccttgctgcga
actctggacgtgcagtgggcggaaggactgaaagacgcacaaatgagagacctcctgtcc
ccgcctacggacaaccggccaggtcagatcgacaaccggagcaagctacggaacatcgtg
gagctgcgcctggccgggctggacatcacggacgcttcgctgcggctgatcatcaggcac
atgcccctgctctccaaactcaatctcagttactgtaaccacgtgacagatcagtctatt
aacctgctgaccgccgtcggaaccaccacgcgggattcgctaacggaaattaatttatca
gactgcaataaggtcactgaccagtgcctgtcttacttcaaacgttgtgggaacatctgc
cagatcgacctgaggtactgcaagcaagtgacgaaggagggctgtgagcagttcatagca
gagatgtctgtaagtgtccagttcgggcaggtggaagaaaaacttctgcaaaaactgagt
tag
DBGET
integrated database retrieval system
