Cinclus cinclus (white-throated dipper): 134051531
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Entry
134051531 CDS
T10813
Symbol
COL9A3
Name
(RefSeq) collagen alpha-3(IX) chain
KO
K08131
collagen type IX alpha
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic04510
Focal adhesion
ccic04512
ECM-receptor interaction
ccic04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134051531 (COL9A3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
134051531 (COL9A3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
134051531 (COL9A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ccic00535
]
134051531 (COL9A3)
Proteoglycans [BR:
ccic00535
]
Extracellular matrix (ECM) proteoglycans
Others
134051531 (COL9A3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
134051531
NCBI-ProteinID:
XP_062361310
LinkDB
All DBs
Position
18:complement(10282591..10318147)
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AA seq
678 aa
AA seq
DB search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NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggctgcattctctgctcttgggctcctctccctgtgtcagctcttggccacagcatca
gctcagtcccttccgagaattggaccacaaggccctcctggacctccaggaccccctgga
ccatctggcaaggatggcattgatggagagccaggccctcctggtttgccaggcccacca
gggccaaaaggtgcgccagggaaggctggagctgcaggtgaagctggattgcctggcctt
cctggagtggatggtttaacaggaactgatggcccacctggcccaaatgggcctccagga
gaccgtggtgcattaggacccgctgggccacctggaccagctggcaaaggattaccagga
cctccagggcctccaggacccagtgggctcccaggtggacatggatttcgaggcccttct
ggaccttttggtctgccagggttcccagggcctcctggaccacctgggcctcctggtctt
ccaggtgcccttcctgatggcggtggggaccttcagtgcccagctctgtgcccaccaggt
cccccaggtcccccaggaatgccaggcttcaagggacacactggtcacaaaggggagcct
ggtgaagtaggaaaacaaggagaaaagggtaatcctggccctcctggccctccaggaatt
cccggtggtgttggcctgcagggcccaagaggactaagaggcctccctggtccaatgggt
ccagctggcgacagaggtgacattggattcagaggcccatctggaatcccaggacttcca
gggaaagctggagaccaaggcagcaaaggacctcagggattccgggggcccaaaggtgac
actggtaaacctggaccaaaaggaaacgcgggtgctcgtggactcataggagaacctgga
atgcctggcaaggatgggcgggatggaactcctggactcgatggtgagaagggtgactca
gctcccgtgggtgctcctggagagaaggggccaaacggacttcctggtctgcctggaaga
gcaggtattaaaggctcaaagggtgaaccaggcagccctggagagatgggagaggcaggt
ccctcaggagagccaggcatccctggcgatgttggcattcctggtgagagaggtctgcca
ggacccagaggagcaactggaccccttggcctccaaggccccataggagcccgtggtgtc
agaggtttccaggggcccaaaggtgccagtggtgagcctggccttcctggcccgactggg
atccgtggagagacaggtgacaggggtcctcttggtgttcctggtcccaagggaaaccag
ggctttgctggagcagatggcctcccaggtgacaaaggagagctgggtccctttggaccc
cctggccaaaaaggagagccaggaaaaagaggagaacttggtccaaaaggtgtcaaagga
cctaacgggacagctggagcaccagggatcccaggacatccaggacccatgggtcaccag
ggggagaggggtgtccctggcatcacaggaaaacctggacctcctggcaaagaggccagt
gagcaacatatcagagaactctgtggggaaatgataaatgagcaaattgcccagttggct
gctaacctgaggaagcccctggctcctggaatgacaggacggcctggcccagctgggccc
ccaggtcctcctggaaccgtgggaagtgttgggcatcctggtcctcgagggccccctgga
tacagagggccaacgggagagcttggtgatcctggacccagaggtgacactggtgaaaag
ggagataaaggacctgttggccaaggtatcgatgggcctgatggagaccagggactgcag
ggaccacctggtgtgcctggaattacgaaaaatggccgtgatggtgctcagggtgaaccc
gggctgccaggggatcctggcactcctgggactactggggctcagggaactccaggaata
tgtgacacgtcagcttgcatgggagctgttgcagcatcaacttccaaaaaatcataa
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