Cinclus cinclus (white-throated dipper): 134056200
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Entry
134056200 CDS
T10813
Symbol
FOCAD
Name
(RefSeq) focadhesin isoform X1
KO
K27498
focadhesin
Organism
ccic Cinclus cinclus (white-throated dipper)
Brite
Messenger RNA biogenesis [BR:
ccic03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
134056200 (FOCAD)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
134056200
NCBI-ProteinID:
XP_062368814
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Position
Z:complement(51067382..51160343)
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AA seq
1802 aa
AA seq
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MLDDIKKRFEFPNAVVQSQAVGHLIAAILKEKVSSKKIRQASDQTPALNLLWEKCCSENV
ALRTACCEGLVALVVEKHAELDYVLHGALNLIPSARNVHGLVKTVCKLIQIQAIQLGKDG
DESVWSLYGIRSTPHPLITVLENRPDCWPVLLQQITLFFHQCPERAEGSCVGIMASFLRY
LYCEPSQLREYAELRMGLLKILLQPHGQKHKEAPSMLECEILQLLCVLIPHLQLKDLLQV
TEALFFLQELFLSLLRYPLFWKVQLSQLSLQLLCFCEVCLNVTGECSTLISLIEDSFELL
KEVFPVDQFIIGLALLLLQTPESQQKPVLSLAYKLLSCSETQDISTTALTLVMPVLQILS
STAVGDCLSGDVSETTRQQLAVNLLGILKEKGVKDKEESVSCKLLSPITSSYSSLYTTWK
IMELMKEKSAVTKWLSSVKSLLPVSTQVPVHVFLLLAYLLIQENGDSLCDVLQATTEIAK
ADCSQVPNLIPVLIFKLGRPLEPALYREILYTLPTLGVHKVCVAQILRAIYMLGNTPKLR
AVASRLMTSLWERQDRIYPELQKFLAMSDMPSVSVDKDAQWEKLVAKAACIRDVCRLRPY
QHGADMLAAISQVLNECTKPDQASPAAIVLQGLRALCEAEVVCIRSTWNALSPKLSCDTR
PLILKALNELFSLVPSLTVNTNEFEKFKAQVVSFLWNNTQNKDALVAISAYKSLSSFDSE
EHTILHLPEQARPVDSLEEIDMNEDEEDQEANLSVPGSSYIKLLSLTPAAVLGAFEEFAT
SLVKQEMTNMPRAVYHSALRGGTTRSDQGKTVAGVPNFLLKMYERNKQPGMTPGLAAGML
LCFDLPVHMGKDGKPINRFLASRGRNFQQMLVALIHEVNIQPSEWHHSILLPQTWLGFMS
RTYSAVLQGRQAELEMQLKHGKEDPEEVQYKQFTAWLWVRDMLTDVIKGASKDSPVVKGN
SIFALTGLAVAVAKYESSLSSDTEGVPETEPDFIPMKHWISMVTETLLSIVNSRYQPKGQ
VFPWFYQKSYSGENTASIIARSCAATALSLLVPIFTVSCKEKIEEVLSMLTDRLPGKPNA
DESQAVQIHMGLGLGMFISRLYEEKVSDIPGQQMNLVLMKSLDVLEDCCFDTSLEYNTGC
ILGVGLVLSFMSHSSQTESRVHVSALLRKLCKYLDSSEDQSRGVQEVLAYSVACSCVSGF
SVGIIEAAEAEKAMSKLQNLAENNQQTYSFALALGAIVHGLSAYGHGKAEDLSNRLMPAW
IKIVLAEGSPTMERLAAVSGLVALVGSEGGMIQLKSESIQSSQFQSKLNEVIRTLTQIIS
FSEQIGLQTNAVRLLGRLHMSCLSSTQNRASVPPDFSYLPVNSFIRAAIDFAIESGKKGP
ESVPAELVKVALAPIALVGESHQYPPVNWASILSPLMRLDFGHEVKHLCLELAVTQAQSS
QNAAMLLGMWVAPPLVYSLSMKTQKYLFMSLSLWMQHVAEDKLQSFTKVLLIQQFEMRNH
RKSPEACQCVLQGLLQAMKLPNPAQFCWSILCQAVEKIYELLPNEVQRGELEMYIDVARC
ISEMADSEINRIVQISKNNIEKATFMKVYLVSQGRLPLTNLSAMLDIVAGYQQKENILWM
FLHSFYHARIVRHENTGVLKRMDWLLDLMGYIRNVAYKSIPLQNVDLKECIDFLMWLFAA
SVLAWADHGAPLLLGLTADWSLWKHRMVSPELPEEHIGKHPTDKFAVQEALTLLPSSLSL
LLAKEPWKEQTQKFLDWLINMMECPKEALSKSSMDLLKVTLLALRSLAEFKKKAVWTKAY
GW
NT seq
5409 nt
NT seq
+upstream
nt +downstream
nt
atgttggatgacatcaagaaacggtttgaatttcctaatgcagttgttcagtcacaggca
gtgggccatctgattgctgccatactgaaagaaaaagtttcttcaaagaagatcaggcag
gcttctgaccagacccctgctctgaacctgctttgggagaagtgctgcagtgagaatgtt
gccttgcgaacagcctgctgtgagggattggtggcgcttgtggtggagaaacatgctgag
cttgactacgttcttcatggagctctcaacctaattccctcagcaaggaatgtacatggt
ttagtaaaaactgtttgcaagttaatacaaattcaagctattcagctgggaaaagatgga
gatgaatctgtttggagtctgtatggaatcaggagcactcctcatccattaatcactgtc
cttgaaaacagacctgattgctggccagttcttctacagcagataacactatttttccat
cagtgtccagagagggccgagggttcatgtgttggcataatggcttcatttctaagatat
ctgtattgtgaaccatcccagttacgggaatatgctgaactgcgaatgggtttacttaag
atcttactgcagcctcatgggcaaaagcacaaagaagcaccctccatgctggaatgtgaa
attcttcagcttctgtgtgttttgattccacacttgcagcttaaggacttactgcaagtt
acagaagccttgttcttcctgcaagagctgttcctcagcctactacgctatcctttgttt
tggaaagttcagttatcccagcttagcctgcaactgttgtgtttctgtgaagtgtgttta
aatgtaacaggagagtgctcaactttgatctccctaatagaggacagctttgagctccta
aaagaggtatttccagtggaccagtttataattgggctagcgcttctactgctgcaaaca
ccagaaagtcagcaaaagcctgtcttgagtctagcctacaaactcctttcatgttcagaa
acccaggacatttcaaccacagcccttactttggtgatgcctgtgctacagatcttatct
tctacagcagttggagactgcctatcaggggatgtttctgaaactaccaggcagcagctg
gctgtaaatcttttgggaatattaaaggagaaaggtgtgaaggataaagaggaatcggtg
tcctgcaaactcctttcccccataaccagctcttacagttcattgtatacaacctggaag
atcatggagctcatgaaagagaagtctgcagtgactaagtggttgtcttcagtgaagtca
ctgctaccagttagcactcaagtacctgtccatgtttttcttttgttggcttatctactg
atccaagaaaatggagacagtctttgtgatgtactgcaggctacaacagaaatagccaag
gctgattgttctcaggtcccaaatttgatcccagttctgatatttaaattgggaagacct
ttggagcctgcactttacagggagatattgtatacattgcctacacttggtgtacataag
gtttgtgttgctcagattctacgtgccatatacatgcttgggaacacacctaagctcaga
gcagttgcctcacggttgatgacatcattatgggaaagacaggatcgaatttacccagaa
ctgcagaagttcttggcaatgtctgatatgccctctgtgtctgttgacaaagatgctcaa
tgggaaaagctggttgctaaagctgcttgtataagagatgtatgtaggctgagaccatac
cagcatggagcagatatgttggctgcaatttcccaggtattaaatgaatgcacaaaacct
gatcaagcttcacctgctgccatagtattacagggtctacgggcactttgtgaggctgag
gttgtttgcatccgttctacatggaatgctctgtcaccaaagctgagttgtgatacaaga
ccactcattttaaaagcactgaatgaattgttttccctggttccctcattaacagtgaat
acaaatgaatttgagaaattcaaagctcaagttgtcagcttcctttggaacaatacacag
aacaaggatgcccttgttgccatttcagcctataaatcactctcatcatttgactctgaa
gaacatacaattcttcatcttcctgaacaggcacgacctgttgactcattggaagagata
gacatgaatgaagatgaagaggatcaggaggcaaatctgtctgttccgggttcttcatat
atcaagctgttgtctctaacaccagctgctgttttaggagcatttgaagagtttgcaaca
tcacttgtgaaacaggagatgaccaacatgccccgtgctgtgtatcattctgccttaaga
ggagggaccacacgctcagaccaggggaaaacagtggctggtgttccaaattttttgctg
aaaatgtatgagaggaacaagcaaccaggcatgacacccggccttgcagctggcatgttg
ctgtgtttcgacctcccagtccacatgggcaaggacggtaagcctattaatcgatttctg
gccagcaggggccgcaatttccagcaaatgttggtcgccctcattcatgaggttaatatt
cagccttctgaatggcaccactccatactgctgccgcagacctggttaggatttatgagt
cgaacctacagtgcagtcctgcagggaaggcaggcagagctagagatgcagttaaaacat
ggaaaagaggatcctgaagaagtgcagtacaaacaatttacagcctggctatgggtcagg
gatatgttgactgatgtcatcaaaggtgcttccaaagacagcccagtggtgaaaggaaac
tctatttttgctttaactggccttgcagttgctgtagccaaatatgaaagcagcctttct
tcagacactgaaggggtgcctgagactgaacctgattttattcctatgaaacactggatt
tccatggtcacagagaccctcttgagtattgtgaatagccgctaccaacctaaaggtcag
gtcttcccatggttctatcagaaatcctattcaggtgaaaatactgctagtattatagct
cgctcctgtgcagccacagctttgtctctcctggtgccaattttcactgtatcgtgcaag
gagaagattgaggaggtcctgagtatgctgactgacaggttacctgggaaaccaaatgct
gacgagtctcaagctgttcaaatccacatgggtcttggtttggggatgttcatctcacgt
ttgtatgaagaaaaagtcagtgatatacctggtcaacagatgaacttggttctcatgaaa
tccttggatgtgttggaggactgctgctttgacaccagtctggagtataacactggatgt
attttaggagtaggacttgttctttcatttatgagtcacagtagccaaacagaatcacga
gtgcatgtttctgctttattgcgaaaactctgcaaatacctggacagcagtgaggaccaa
agcagaggagtccaggaggtacttgcctattctgtggcctgttcctgtgtctctggtttc
agtgttggaatcatagaagcagctgaggctgagaaggctatgagcaagctacagaactta
gcagagaataatcagcagacctacagttttgctttggctttaggtgcgatagtacatgga
ttgtcagcttatggtcatgggaaagctgaagacctgagtaacagactaatgccagcctgg
ataaaaattgtgcttgcagagggttctccaacaatggagcgtctggctgctgtcagtggg
ctggttgcactggtgggctctgaaggaggcatgatacagctgaaatctgagagcattcaa
tcctcacagtttcaaagtaagctgaatgaagtgatcagaacccttacacagataattagt
ttctcagagcagattggtcttcagacaaatgcagtgagacttctgggacgtcttcacatg
tcctgtttgtcttctacccagaacagggcatctgttcctccagattttagctacttacct
gtaaacagctttatcagagcagccattgactttgccattgaaagtggaaagaaaggccct
gaatctgtcccagctgagctggtgaaagtagcactggcacccattgcattagttggagaa
agccatcagtatccacctgtaaactgggcatccattctttctcctttgatgaggctggac
tttggtcatgaggtaaaacatctctgccttgaactggctgtgacgcaggcccagtcatct
caaaatgcagcaatgcttttagggatgtgggtggcacctccccttgtctacagtctcagt
atgaaaactcagaaatacctgttcatgtccctgtccctgtggatgcaacatgttgcagaa
gacaaactacagtcttttaccaaagtgcttctgatacaacaatttgaaatgaggaatcac
agaaaaagcccagaagcttgccagtgtgttctacaggggctcctccaggcaatgaaactt
cccaatcctgcccagttttgctggagcattttgtgtcaggctgtggagaaaatatatgag
cttcttccaaatgaggttcagagaggtgaactggagatgtatatcgatgtagcaagatgt
atttcggaaatggccgattcagagatcaatcgcattgtccagatctccaagaacaatata
gagaaggccacgttcatgaaagtgtatttagtttctcaagggagattgcctctgacaaac
ttgagtgccatgcttgatattgtggcaggatatcaacagaaagaaaatattttatggatg
ttcttgcatagtttctatcatgctcgtattgtgaggcatgaaaatacaggagttctgaaa
agaatggactggctgttagacctgatgggctacatcagaaatgtagcatacaaatcaata
cccttacaaaatgttgatctgaaagagtgcatcgatttcctcatgtggctgtttgcagct
tctgtgttggcctgggctgatcatggtgcaccgttactgcttggcctcactgctgactgg
tcattgtggaaacaccggatggtatcaccagaattacctgaggaacacattggcaagcac
cccactgacaagtttgctgtgcaagaggctctcactctccttccaagtagcctttccctt
ttgctggctaaagaaccatggaaagaacaaacacagaagtttcttgactggctgatcaat
atgatggaatgtcctaaggaagcattatcaaaatcttccatggacctgctaaaagttaca
cttctggccttgaggtctcttgcagagttcaagaagaaagcagtatggactaaagcttat
gggtggtag
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