Cinclus cinclus (white-throated dipper): 134057066
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Entry
134057066 CDS
T10813
Symbol
SKIC3
Name
(RefSeq) superkiller complex protein 3 isoform X1
KO
K12600
superkiller protein 3
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134057066 (SKIC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccic03019
]
134057066 (SKIC3)
Messenger RNA biogenesis [BR:
ccic03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
134057066 (SKIC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_19
TPR_2
TPR_1
TPR_14
TPR_16
TPR_8
TPR_11
TPR_12
TPR_CcmH_CycH
TPR_17
TPR_9
ANAPC3
TPR_6
ARM_TT21_C
TPR_15
BTAD
Fis1_TPR_C
Retrotran_gag_2
TolB_N
TPR_30
Vit_open_b-sht
TPR_5
TPR_20
Motif
Other DBs
NCBI-GeneID:
134057066
NCBI-ProteinID:
XP_062370076
LinkDB
All DBs
Position
Z:complement(13186644..13234183)
Genome browser
AA seq
1562 aa
AA seq
DB search
MSNKEVKAALKSARDAIRNKEYKEALKHCKAVLKQEKNNYNAWVFIGLAAAELEQPDQAK
GAYKKAIELEPNQLLAWQGLANLYEKPNQIDVKADLADVYQKLLELYESGDKQKWCDVCN
KLVELYHQEKKYLEVAETCQKLIRMKQEEGAEKAELHQLWKKMIHLLKDSTRNQDNKTGQ
LLLTAFEHALHSADTVPGDDHQNLYKDFIQCLSNFPHEVARLEKACHDMVALYPTVSYPL
EVLCLHFVQSGTLSEEALHCFSRLLEMDANSGPGIIGFGIKCLKENKYKEAVKSLTEGLQ
KTNQCPAAWYYLAEAQMKIHEHRNAVLSCNQALEALGTPAGPNLRWNNLALQLKAETLIK
IADADAAEEAIKALEQIIGGSSDPVVSALRGQAYLNIGLMDQASKISQELLLSHPDLAEA
YALEGFIHYSQKNYEQAEKSFLNAIERKAGTAEYHQYLGLTYWFMSDETKKDKGKALTQF
LKAAKLDSYLGSAFCYLGNYYRDIAGDKSRARGCYKKAFELDEMDEESGTAAVNLSVELG
DMDTALSILNEVTEKARPGTAKWAWLHRGLYYLRTGQPSQAVADLQAALRADPKDSNCWE
SLGEAYFNRGSYSTALKSFRKASELNPGLVYSIYRAAALEQILGKYENAIATYQQILKKT
ENYVPALKGLGECYLMLARSALDNYLDRKAVDYIEQALAYFTRAVKHRPDVSCLWKLLGD
TCTSVHVISPTKVNVQVPGSLLSKSATEQVLKKNELLILGGRCYGRALKLMSLPSIWCDL
GINYYRQAEHLTAVGTNMNEISELLEKSLQCLKKAVRLDSKNHLYWNALGVVACCSAIGN
YALAQHSFIKSVQAEQINIVAWTNLGVLYLATGNIEQAHEAFKVAQSLEPSYLLCWIGQA
LIAETVGSYDTMDLFRHTTELSMHTEGAKGYAHWVCSTLQDKANRNTELYLYNIVQMNAI
PTAQVVLSKYAERNPDDASAFIMFGFLNEYLHLKQQAAYAYERAASLLKNSEDTEKYNTA
MQNYGRSLCALGLSDEAIEVYTSIPLTEFDGIVGLALAYFKKGLLEESIKAYEKALSVAE
SEKDKAHILTALAIIEYKLNKVDAAKTLLFKCSLKEPSVESLKALCTLGLVKQDATLATA
ALKELLKHEKGDDGIYERCLIASAVYALQGRNVAIQREVSKAIHSYPDNPALWSLLSRLV
PLYASKKPKGGAVAGSVAHTLDVNCGKEVLLNIAVNQLVAGCHMLEDKKNNPLKNIQKAI
HVCPDNPAAWAVLMAACHAENTVVCLNNTEPKQTGLEMTLVSTVSAKTGENNLPRNYVRM
LEDWCLCQAITSLEETGKLSEAEALCKKGLKSCPEHPALFLLLRQVQCKQLLQSHKELPD
NILEELRKTVMSSSSSAAAWQWLAKIYQSQRMMTGAEMCYRRSLQLASQQGSWNGKLSSL
LRLAMLALEICMANVPNEHWPSLVQEATTEALKLSPCPLAALLQALLQYNRKMGARETRR
MLERVVYQPGNPETIVSVARWYLLQHLYAKDDCELIDVLIENAKANGDVRALELNEKLSA
SA
NT seq
4689 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaataaggaggtgaaggcagcattaaagagtgctagagatgcaataagaaataaa
gagtataaggaggccttaaaacattgcaaggcagtcttgaagcaagaaaagaataactac
aatgcttgggtattcattggcctggcagctgctgagttagagcagcctgatcaggccaaa
ggagcatacaagaaggctattgaacttgaaccaaaccagttactggcatggcagggacta
gcaaatttgtatgaaaaacccaaccaaatagatgtcaaagcagacttagcagatgtttac
caaaaactcttggaactctatgaaagtggtgacaagcagaaatggtgtgatgtatgtaac
aagcttgtggaactgtaccatcaagaaaagaaatatttagaggtggctgaaacttgccag
aagctaataaggatgaaacaggaagaaggtgcagaaaaggcagagcttcatcagctttgg
aagaagatgatccatttactgaaagacagtacaaggaaccaggataataagactgggcag
ctgcttttgactgcatttgagcatgcattgcactctgctgacactgttcctggtgacgac
caccaaaatctttacaaagacttcatacagtgcttgtcaaattttcctcatgaagtggct
aggttggaaaaagcctgtcatgatatggtggctttgtatcctactgtgagttaccctttg
gaagtactttgcttgcactttgttcagtcaggtactttgtcggaagaggccctgcactgt
ttctctaggcttttggagatggatgcgaacagtggtccaggcatcattggttttggtata
aaatgcctcaaagaaaataagtacaaggaggctgttaagagtctgacagaaggtttgcag
aagactaaccagtgtccagcagcatggtattatctagcagaggcacagatgaaaatccat
gagcacaggaatgctgtcctatcctgtaatcaagctcttgaggctcttggaactcctgcg
ggtcctaatcttcggtggaataaccttgcccttcaattgaaagcggagactttgattaaa
atagctgatgctgatgctgcagaagaagccattaaagcacttgagcagattataggtgga
agcagtgatccagtggtttcagctctcaggggtcaggcttatctaaacataggtttaatg
gatcaagcttcaaagatttctcaagagcttctgttgtcccaccctgatctggctgaggcc
tatgcgctagagggtttcatccattattcccaaaagaactatgagcaggcagaaaaaagt
tttctaaatgccattgaaagaaaggctggaactgcagagtatcatcagtacctggggctc
acatactggttcatgagcgatgagacaaaaaaagacaaaggaaaagcactcactcagttc
ttgaaggctgcaaaattggacagctacttgggaagtgccttttgttatctaggtaactac
tacagagacattgctggagacaaaagtagagctcgtggttgctataaaaaggcttttgaa
ctggatgagatggatgaagaatctggaacagcagctgtcaacttaagtgtggaacttgga
gacatggacactgctctgtcaatcctgaatgaagtgactgaaaaagcaagacctggtaca
gcaaaatgggcctggcttcatcgtggactttactacttgagaactggtcagccgtcacaa
gcagtggctgatttgcaggcagctctcagggctgatccaaaggattccaactgctgggag
tctctaggggaggcttactttaacagaggtagctactcaacagctctgaaatccttcagg
aaagcaagtgagctgaacccagggcttgtgtacagcatttacagagctgcagcactcgag
cagattctaggcaaatatgaaaatgctatagctacctatcaacagattttaaagaagaca
gaaaactatgtgcctgcactgaaaggacttggtgagtgttatctcatgctggcaagatca
gcccttgataactatttggataggaaggctgtggattacatagagcaggcccttgcatat
tttacaagggcagtaaagcaccgccctgatgtatcttgcctctggaaactcttaggagat
acctgtactagtgtgcatgttatttcaccaaccaaagtaaatgttcaagtaccaggatct
cttctgagtaaaagtgcaaccgaacaagtactgaagaaaaatgagcttctcatactggga
ggaaggtgttatggcagagctttaaaactgatgtctttgcctagcatatggtgtgatctt
ggaataaattattatcgacaagcagagcacctcacagcagtgggcaccaacatgaatgag
atcagtgaactgctagagaagtctttgcagtgtctcaaaaaagctgtgagactggacagc
aaaaatcatctctattggaatgcgcttggtgtggttgcttgttgtagcgctattgggaat
tatgctcttgctcaacattcgttcatcaaatccgttcaagctgagcaaattaatattgtt
gcctggaccaacttgggggttttgtatctggcaactggaaacattgagcaagctcatgaa
gccttcaaggtagcccagtctctggagccttcttacctgttgtgttggattggacaggct
cttattgcagagactgtgggcagctatgataccatggatctcttcaggcacacgactgaa
ctcagtatgcatactgagggagcaaaaggctacgcccactgggtatgttcaacactgcag
gataaagccaacagaaacactgaactgtatctgtacaacattgttcaaatgaatgctata
ccaacagcccaagtggtcttgagcaaatatgcagaaagaaatccagatgatgcttctgct
ttcataatgtttgggtttttgaatgaatatctgcatctaaaacagcaggcagcctatgcc
tatgagagggcagcttcactgctgaaaaactcagaggatactgagaaatacaatacagca
atgcaaaactatggcaggtcactgtgtgcacttgggctgtctgatgaggccattgaagtt
tacacatcaatacccctaactgagtttgatggcattgtggggctagcattagcttacttc
aagaaaggactcttagaagaaagtatcaaagcctatgaaaaagccttgtctgttgctgag
tctgaaaaagataaagcgcatatcctgactgccttggcaataatagaatataaactgaac
aaagtggatgctgcaaagacactactgtttaaatgctcgctaaaggaacctagtgtggaa
agtctgaaggctttgtgcactctgggattggtaaagcaggatgcaacacttgctacagca
gccctaaaagaattactgaagcatgaaaaaggggatgacgggatttatgagagatgtctt
attgcatctgctgtttatgcattacaaggtagaaatgtggcaatccagagggaagtttcc
aaagcaatacacagttaccctgataatcctgccctttggtctcttctgtctcgactagtt
ccactttatgcatcaaaaaagccaaaaggaggagctgtggcaggaagtgttgcacataca
cttgatgtaaactgtggaaaggaagtcctgctgaatattgcagttaatcagttggtagca
ggatgtcacatgttagaagataagaaaaacaatcctttgaaaaatattcagaaggccatc
catgtctgtccagataatcctgctgcttgggcagtgctaatggcagcctgtcatgctgaa
aacactgttgtctgtctaaacaacactgaaccaaaacaaacaggtctagagatgacactt
gtgtctacagtttcagccaaaactggggaaaataaccttccacgtaattatgtccgtatg
cttgaagactggtgtctgtgtcaagctattaccagtctagaggagactggtaaactctca
gaagctgaagctctctgtaaaaagggcttaaaaagctgccctgagcatccagctctgttt
ttgcttttgagacaagttcaatgtaaacagctgttgcagtctcacaaagaacttccggac
aacatcctggaggaacttcgcaagacagtcatgtccagttcatcatcagctgcagcctgg
caatggctggcaaaaatatatcagtctcagagaatgatgactggagcagagatgtgttac
agaaggagtctgcagttggcatcacagcagggcagctggaacgggaagttatctagtctg
ctcaggctagctatgcttgcactggaaatctgcatggcaaatgtcccaaatgaacactgg
ccatccttggttcaggaagcaacaactgaagctttgaaactttctccttgccccttggca
gctcttcttcaagctctgctacagtataatcgcaaaatgggagcaagggagactcggcga
atgttggagagagtcgtttatcaaccagggaatccagaaaccatagtgtcggtggcacgc
tggtacctcctgcaacatctgtatgccaaagatgattgtgaattaatagatgtgcttata
gaaaatgccaaagctaatggagacgttagagctctggaactaaatgagaaattgtccgca
agtgcctag
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integrated database retrieval system
