Cephus cinctus (wheat stem sawfly): 107269252
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Entry
107269252 CDS
T07523
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X2
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ccin
Cephus cinctus (wheat stem sawfly)
Pathway
ccin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107269252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccin03019
]
107269252
Messenger RNA biogenesis [BR:
ccin03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107269252
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107269252
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
HTH_upst_double_PIN
Motif
Other DBs
NCBI-GeneID:
107269252
NCBI-ProteinID:
XP_015598373
UniProt:
A0AAJ7FLZ6
LinkDB
All DBs
Position
Unknown
AA seq
2417 aa
AA seq
DB search
MNLDSLSFTLSQISYLVANLNKKNFRESAQEISVLVQWKGLEADRHLLRCLFSYVDFSTG
EPPEPSAKDYYQVQLLAQECTNLLSKPSLISNLCYAIDHPLHQQKTLNPSSKFFPHLRKV
LGLTLVQEVAFAIALLHSENADIRTLALEQIQKQLPGLIKNYINSEISNKHHEEGLHDSS
PEVLYLILSEVFHEPNQFGLSSEGKEKFLKNLRRDFPRELVPVVLAPLLYPGDGETPQAT
IELNMAANPMDGSSLVELIMELGYGFTTNVEECRAALAGLGAREISPICTARVLAHMARS
CSGLEDAGGLQSFWGNSATSQDTGKEKTSDGSTPSTWNVEVFVQTLKEIQSTLSWNEVIL
KLDHTEFILKDRQGLNLLITGLRLGLQHQGYPLDMFPVELFYRHWDNVEGQFSLVQQVLK
NPDIFCFADYPYHSVTVDVLKAAPEGDSKEAQTWRSLNVVELLLHMAERGLYGPVQEIFK
WPIQHCPDVLVLALLQINPPITILRQELLSTLMPIFLGNHPNSAVILHHAWHANNLKIKS
IIMHAMAEWYLRGDHDQTRLSRILDVAQDLKALSALLNAQSFPFVIDLACLASRREYLKL
EKWLTDKIRDHGEVFVAACVKFLQRRCPQVMGPGMKEDPTVPKASQLPQETLTTILACLQ
VCAGSVSQECSEAIMTMVQNCSLMLSKASMTRPPPPGVLRHRGLEPFNPATLGGQLFSSK
QVDPLGNLSSSLASMGLGSSLGPPSSSAFNLPGALGPLVSAPGSPSRLMGPSPSPFPMLP
LSSQLHSGPVGTQGPSVVPGGSAIGGLGRLGPPTGIEKARLPETSNLFPEMAQNVSKEIE
DEANSYFQRIYNHPPHPTLSIDEVLDMLKKFQDSGNKREREVFNCMLRNLFEEYRFFPQY
PDKELHITAQLFGGIIERGLVNSYVTLGLALRFVLDALRKPEGSKMYYFGIAALDRFKSR
LKEYQTYCEHVRTIQHFSEFPPHLIEYIEYGLQGQEPPSRPQGPVLPKTLAAMLAPVTTP
YKTITTTTITTSTTQAKPSTTPTTSLPGRPSIANATNIDTLLVATDKEEKITSPPEALQD
KTAFIFNNLSQLNLQQKCDEIREIVTEEYWPWMAQYLVMKRASIELNFHVLYSNFLDCLK
LPEVNKMVTRETFRNIKVLLRSDKGIANFSDRSLLKNLGHWLGMLTLGRNKPILQIDIDL
KSLLVEAYHKGQQELLYVVPFVAKVLESCAKSRVFRPPNPWTMAIMNVLAELHQEPDLKL
NLKFEIEVLCKNLNIDVAELKPAIYLKDPEKLRNLEYQLSHPNKKSEPVNNPPQTQGPME
ELVGPTAAGPMVPQPAPPANTTPSLPTGPPEPRFNYMDISVTGIANISQHITVNNQLPLF
QTHPHLKQFIRLAVERAIQEWIHPVVDRSIKIALTTSEQIVRKDFALDPEEVRMRTAARH
MVRNLTAGMAMITCRDQVNHDQILASISTNLKQAFGAAMIGTTPQQKELIEQAATVVAAD
NMELACAFVQKTAIEKAIPEMDKRLLNEIELRKIARQEGRRYCDPLAKYQAERMPEQIRL
KVGGVTPQQMAVYEEFARNIPGFLPLSERDTQALFMPKPISEPAVTAFTANPTVAVATAQ
QVAAYAAAVSNDEVGAMLEKLATEVELLLREAAMGPAAPPPQHAALHNLLDSIILTRRSR
DAGAAMALLKKAVEGLLDGPTISSGVIDSEVLLRYRELHLRILKCLQDPRAYGMQWTNKH
VTRCLTECREEFRYNFEAVDCLIRSHLLSLPQYDLALAQAMDAGNAMATAFAMQLVQLYL
IDERQTTHVTESDLFHTIEILARMAHLRSPPEGISLFRLTSLIESLRANHDPAVLADRAP
AGPTAHIHSGILQVRFITSDHQARDFDDPPGLMEKTEYLLREWVSMHHSPTHARDPTKAF
GMFVHQMNIHGILKTDDLITRFFKLSTQMCVDLCYRALAEANAAPSVVRAKCFHTLDAFV
RLVALLVKHSGDTTNTHTKINLLNKVLGIVAGVLLQDHEMRGTDFQQLPYHRIFIMLFLE
LCAPEPVLEAVNYQVLTAFCHTLHILRPAKASGFCYAWLELVSHRVFIGRMLAITPQQKC
WGMYAQLLIDLFKYLAPYLRNAELAKPVSLLYKGTLRVLLVLLHDFPEFLCDYHYGFCDV
IPPNCIQMRNLILSAFPRNMRLPDPFTPNLKVDMLQEIAHAPRVLTNFASMIQPSNFKKE
LDSYLKARAPVTFLSELRSNLQVSQEAGMRYNIQLMNALVLYVGTQAIAFIRSKGHTPNM
STIAHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTLLYLFAEANTEA
IQEQITRVLLERLIVNRPHPWGLLITFIELIKNPTYKFWTHEFVHCAPEIEKLFESVARS
CMVQKQVQPTPEPEIPE
NT seq
7254 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggactcgttgtcttttactttgtcacaaatcagttatttggttgcgaattta
aacaagaaaaattttcgagagagtgcccaggaaatatcggttttggtgcagtggaagggt
ctggaggcagacagacacttgctgcgctgtttgttctcatacgtagacttttcaactgga
gagccacctgagccaagcgcgaaggactattatcaggtgcagctacttgcgcaagagtgt
accaatcttcttagcaagccttcgttgatctctaatctctgttacgccatagatcatccc
cttcaccagcaaaagactttaaatccatcctcaaagttttttccacatctgaggaaggtc
cttggcctaacgcttgtccaggaggttgcctttgcgattgctttgctgcactcggagaac
gcggacatacggacattagctttagagcaaatccagaagcagctgcctggattgattaaa
aattatatcaactctgagattagtaataaacaccacgaagagggactgcacgactcatca
cctgaggttttgtaccttatcctctctgaggtctttcacgaacctaaccaatttggtctt
tcgtctgagggaaaagaaaaatttctcaagaatttaaggcgtgactttccccgtgaactg
gtaccagtggtgctagcaccacttttgtatccaggcgacggggaaactccacaagccact
atcgagttaaacatggctgccaacccaatggatggcagttctctagtagaattgattatg
gaacttggatatggattcaccaccaacgtagaagaatgtcgcgcggcattagcaggactt
ggtgccagggagatttccccaatatgtactgccagagtactggcgcatatggcccgtagt
tgcagcggcctcgaagatgctggaggtctacaatccttttggggaaactcagcaacttct
caggacacaggcaaagagaaaacttcggatggcagtacaccatctacgtggaacgtcgaa
gtttttgttcaaacccttaaagagattcaatctactttgtcatggaacgaagtcatctta
aagctagaccacacagaattcatcctcaaggacagacaaggattgaatctcttgatcaca
ggtttacgactaggactacaacatcaaggatatccgttggatatgtttcctgtcgaacta
ttttatcgtcattgggacaatgtggaaggtcaattttctttagtgcagcaagttcttaag
aacccggatatattctgtttcgcggattatccttaccattctgtcacggtcgatgtgctc
aaggcagctccagaaggagatagtaaagaggcccaaacctggagatcgttaaatgtagtc
gaattacttttacatatggcggaacgaggactttatggacctgtacaagaaatattcaag
tggcccattcaacactgcccggatgttcttgtattagcgttactacaaatcaatccacca
attacaatacttagacaagaattactcagcactctgatgcccatcttccttggaaatcat
cccaactctgcagttatccttcatcatgcctggcatgctaataatttaaagattaagtcc
atcataatgcacgccatggctgagtggtatttacgcggtgatcacgatcagacaagactt
tctcgcatcctagatgttgctcaggatctcaaagccttgtccgcattacttaatgcacag
tcctttccgttcgtcatcgacctagcttgcttggcttcgcgacgagaatatttaaagctt
gaaaagtggcttactgataaaatccgcgatcatggagaagtgtttgtggctgcctgcgta
aagtttttacaacggcgatgtcctcaagttatgggacccggtatgaaggaagatcctacc
gttcccaaagccagtcaattaccccaggaaacattaacgaccatccttgcttgcctacaa
gtatgcgctggaagcgtttctcaggaatgttctgaagcaattatgaccatggtgcaaaat
tgtagtttaatgctgagtaaagctagtatgaccagacctccgccaccaggagtgttaaga
catcgtggacttgaaccgtttaacccagcaacgttagggggacagttattttcttcaaaa
caagtggatccgcttggcaacttaagttcaagtttagcttcaatgggtcttggctcaagt
cttggcccacccagtagttctgcgttcaatctaccaggagccttaggtcctctagtctca
gcgccaggatcaccatcaagattaatgggaccatcacctagtccatttcctatgttacct
ctatcttcgcaattacactctggtccagttggtacacaaggtccatcggtcgtaccagga
ggcagtgcaataggaggtctgggacgtctcggtcctccaacaggcattgaaaaggcacgg
ctaccggaaacgtccaacttatttcctgaaatggcccagaatgtgtctaaagaaatagag
gatgaagccaacagttactttcaacgaatatacaatcatccaccacatccgactttatca
atagacgaagttctcgacatgctgaagaagtttcaagactccggcaacaaaagagaacga
gaagttttcaactgtatgcttcgcaatctctttgaagagtatcgattttttcctcaatat
ccggacaaggagcttcatatcacagcacaactatttggtggtattatcgagagaggtttg
gttaatagttatgtgacgcttggactagcattaagatttgttcttgatgcattgagaaaa
ccagaaggtagtaagatgtattactttggaatcgcagcgttggatcgattcaaaagtcga
ctgaaagaatatcaaacttattgcgaacacgttagaacgattcaacacttcagtgaattc
ccaccacatttgattgagtacattgaatatgggctgcaggggcaggagcctccttcaaga
cctcagggtcctgttcttccaaaaacgctagcagccatgctcgcaccagttaccactcct
tataagacgattacgacaacgacaataactactagtaccacgcaagccaaaccatctacg
actcctaccacgtctcttcctggcagaccatcaattgcaaatgctactaatattgacaca
ttactcgtggcgacggacaaggaggaaaagattacgtcgccaccagaagccctccaggac
aagacagcctttatcttcaataacctcagtcaacttaatttacaacagaaatgtgatgag
atacgtgaaatcgtgaccgaggaatattggccgtggatggcccagtatttagtaatgaaa
cgtgccagtatagaactgaactttcacgttctctattcaaacttcctagattgtctcaag
ttgccggaagttaacaaaatggtgaccagagagacatttaggaatatcaaggtgttgttg
agaagtgataaaggaattgctaatttctctgaccgatcgcttttaaaaaatcttggacat
tggttgggaatgcttacgcttggcaggaataaaccaattttacagatcgatatagacttg
aagagcttacttgtggaagcttatcataaaggacagcaggaactgctttatgttgtgccg
ttcgttgccaaagtattagagagctgtgcaaaaagtcgagtttttagaccaccaaatcct
tggacaatggctattatgaatgtactagctgaacttcatcaagaacctgatctcaaacta
aatttgaagttcgaaatcgaagttctctgcaaaaatcttaatatcgacgtagccgaactg
aaaccagctatttacttgaaagatcctgaaaaactacgtaatctggaatatcaattgtca
catcctaataagaaatcagagcccgtgaataatcctccgcaaacgcagggtcctatggag
gagctagttgggcctacagcggctggaccaatggtaccccagccagcgcctcctgcaaac
acaacaccttctttgccaacaggcccacctgaaccacgtttcaattacatggatatatct
gttactggaattgccaatatttctcagcatattacagtcaacaaccaattacctctattc
caaactcatccacatctcaagcaatttattcgcctagctgtggaaagagcaatccaggaa
tggattcatcccgtagtggatcgttccattaagatagccctaacaactagtgaacaaatc
gtaagaaaagactttgccctggatcctgaggaggtcaggatgcgaacagcagcacgacat
atggttcggaatcttactgctggcatggccatgattacatgccgtgatcaggtaaaccat
gatcagattctagcttcgatcagcactaacttaaagcaagcttttggagcggctatgatt
ggaacgactccccagcagaaagaacttatagaacaagcagcaactgttgtagctgcagat
aacatggaactggcatgcgcctttgtacaaaaaactgccattgaaaaagcaatacctgaa
atggataagcgattacttaacgaaatagaattgcggaaaattgcacgccaggagggaaga
cgatattgtgatcctctggccaagtaccaggcggagaggatgcctgaacaaattagatta
aaagtaggtggtgtcacgcctcaacaaatggcagtgtacgaagaatttgcaaggaatatt
cctggatttttgccactgtcagaacgtgatactcaagcactcttcatgccaaaaccaatt
agtgaaccagctgttaccgccttcacagcaaatcctacagtcgccgttgcaacagctcaa
caagttgctgcgtatgcagcagctgttagcaatgatgaagtcggtgcaatgttagagaaa
cttgcaaccgaagttgaacttttattacgagaggctgcgatgggtcctgctgcaccacct
ccacaacatgctgctctacataatctcttagattcaatcattctaacaagacggtccagg
gatgctggtgctgctatggctttactgaaaaaggctgtggaaggattactagatggtcct
actatttcaagcggtgtaatagactctgaggtattgctgagatatcgtgagcttcatctg
cgaatcttaaagtgtcttcaagatcctcgtgcttatggcatgcaatggaccaacaaacac
gttactcgttgtttgactgaatgcagggaagagtttcgatacaactttgaagcggtggat
tgtctcattagatcacacttgttgagtctaccgcaatatgatttagcgctggctcaggct
atggatgctggcaatgcaatggctacagcttttgcgatgcaactcgtccaactttacctg
atagatgaaagacaaacaacgcatgttacagaatctgatctcttccatacaattgagatt
ctcgctaggatggctcaccttcgttctcctccagaaggcatctcattattccgactcact
agcctgattgagtccttacgtgctaaccacgatccggccgtattagcggatcgtgcacca
gctggtcctactgctcatattcactctggaattctccaagtgcgattcattacttctgat
catcaggcccgtgacttcgacgacccaccgggactcatggagaagaccgaatatttgtta
cgtgaatgggtgtctatgcatcacagtcccactcatgctcgagatccgacaaaggcattc
ggcatgtttgtccaccaaatgaacatccacggcatcctaaagacagacgatctcattact
cgcttcttcaagctgagcacgcaaatgtgtgttgatttgtgctacagagctttagcagaa
gctaacgcagctccatcagttgttcgtgccaaatgttttcacaccttggacgctttcgtg
cgccttgtcgcccttctcgtgaaacattccggtgacacgactaacacccacactaagatt
aatctgttgaacaaagtcttgggcattgtggccggtgttctacttcaagatcacgagatg
cgcggaacagacttccaacagttaccttatcacagaattttcatcatgctcttccttgaa
ttatgtgctcctgaacctgttctcgaagccgttaactatcaagttttgactgccttctgc
cacaccctgcatattctgcgaccagcgaaggcatccggattctgttacgcctggctggaa
cttgtttcccatcgtgtattcatcggtcgcatgctcgccatcacaccacaacagaagtgc
tggggaatgtacgcgcaacttctcattgatctcttcaagtacctcgcgccttacctgcgc
aatgccgaattggccaaaccagtgtcactcttgtacaaaggcacgctaagagtactcctt
gtgctgttacacgactttccggaattcttgtgcgactatcattatggattctgcgacgta
ataccaccaaactgcatacagatgaggaacctcattctcagtgcgttcccaagaaacatg
cgtctgccggatccattcacgcccaaccttaaagtcgacatgctccaggagatcgctcat
gcacctagggtacttacgaactttgcatcgatgattcagccatcaaatttcaagaaggaa
ttggattcatatctaaaggctcgtgctccagttacgttcctatcggaattgcgtagcaat
cttcaagtttcccaggaagctggtatgcgttataatatccaattgatgaacgctttagtg
ctctacgttggcacgcaggccattgcctttattcgaagcaaagggcatacaccaaatatg
tcgaccattgctcattctgcgcacatggacattttccaaaatctggctgttgatcttgat
accgaaggccgttacttgtttcttaatgctattgcgaatcagcttagatatccaaacagt
catacgcattacttcagttgtactttattgtatttgttcgctgaagccaatactgaagct
attcaagaacaaatcacgagagtgctactggaaaggctgatcgttaaccgccctcatcca
tggggacttcttattacatttatcgagctcatcaagaaccccacgtacaaattctggacg
cacgagtttgtccactgtgcaccagagattgaaaagctgttcgagtccgtagctcgttcg
tgcatggtccaaaaacaagttcaacccactccggaaccggagatcccagagtga
DBGET
integrated database retrieval system
