Clostridium carboxidivorans: Ccar_00970
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Entry
Ccar_00970 CDS
T03979
Name
(GenBank) ribonuclease
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
cck
Clostridium carboxidivorans
Pathway
cck03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cck00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ccar_00970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cck03019
]
Ccar_00970
Messenger RNA biogenesis [BR:
cck03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Ccar_00970
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_PNO1_2nd
KH_KhpA-B
KH_NusA_2nd
Motif
Other DBs
NCBI-ProteinID:
AKN29486
UniProt:
C6PQV5
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All DBs
Position
189424..190965
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AA seq
513 aa
AA seq
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MSPIIYEIIAGVIIAIGLLVEFYVVKNKAHAIKSQAQEESNRLKEETERDAESKKKEAIL
EAKEEVHKLRSDLEKESRDRRNESQRLERRLIQREELLDKKSDMLEKREESISKKQQEIS
EIQANVEKLYEKERQELEKLSGLTTEDAKEILLEEVSKEIKHESAMMIKEVETKAKEEAD
KRAREVITCAIQRCAADHVAETTVHVVTLPNDEMKGRIIGREGRNIRTLETLTGVDLIID
DTPEAVILSGFDPIRREVARIALEKLIIDGRIHPARIEEMVEKAKKEVENDIKEEGEQAT
FETGVHGLHLELIKLLGRLKYRTSYGQNVLKHSIEVAYLAGLMASELGIDPTVAKRAGLL
HDIGKAVDHEVEGPHAIIGSEVAKKYRESGVIVNAIAAHHGDVESISLEAVLVQAADAIS
AARPGARRETLEAYIKRLEKLEEIANTCEGVEKSYAIQAGREIRIMIKPEEIDDAGAIEM
ARNIVKTIENELEYPGQIKVNVIRETRAIEYAK
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
gtgagtcctattatatatgaaattattgctggcgtaataatagccattggtttattagta
gagttttatgttgtgaaaaataaagcgcatgctataaaatcacaggctcaagaagagtct
aatagattaaaagaagaaacagaaagagatgctgagtctaaaaagaaagaggctatactt
gaagctaaggaagaagttcataaattaagatcagatttagaaaaagaatcaagagataga
agaaatgaaagtcaaaggcttgaaagaaggttaatccaaagagaagaattacttgataaa
aaaagtgatatgttggaaaaaagagaagaaagtataagtaagaagcaacaagagattagt
gaaattcaagcaaatgtagagaaattatatgaaaaagaaagacaggaattagaaaagctt
tcaggtttaacaactgaagacgctaaagaaattttattagaagaagttagtaaggaaata
aaacatgaatctgcaatgatgattaaagaagtggaaacaaaagcaaaagaggaagcagac
aagagggcaagagaagtaataacttgtgctatccaaaggtgtgcagcagatcatgtggct
gaaactacagttcatgtagttactcttcctaacgatgaaatgaaaggaagaataataggt
agagaaggtagaaacatacgaacccttgaaactcttactggtgtagatttaattattgat
gatacacctgaagcagtaattctttcaggatttgatccaataagaagagaagtagcaaga
atagcattagaaaaattgattattgatggaagaattcatccagcaagaatcgaagaaatg
gttgaaaaagctaaaaaagaagttgaaaatgatatcaaagaggaaggcgaacaagcaact
tttgaaacaggagtacacggtcttcatttagaattaataaagttattaggaagattgaaa
tataggaccagttatggccaaaatgtactaaaacattctatagaggttgcttatttagca
ggtcttatggcttcagaacttggaatagatccaactgtagccaagagagcaggattacta
catgacataggtaaggctgtggatcatgaagtagaaggtcctcatgctatcattgggtca
gaagttgccaaaaagtatcgtgaatctggtgtaatagttaatgctattgcagctcatcat
ggtgatgtagaatctatatccttagaagcggtacttgttcaagcagcagatgcaatatca
gctgcaagacctggtgcaagaagagaaactttagaagcttatattaagagattagaaaaa
ttagaagaaatagcaaacacatgtgaaggcgtagaaaagtcatatgccattcaagcaggt
agagaaatcagaattatgataaaaccagaagaaattgatgatgcaggtgctattgaaatg
gcaaggaacatagttaaaactatagaaaatgaattagaatatcctggtcaaataaaagtt
aatgttataagagaaacacgtgccatcgaatatgcaaaatag
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