Clostridium carboxidivorans: Ccar_15180
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Entry
Ccar_15180 CDS
T03979
Name
(GenBank) ATP-dependent helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
cck
Clostridium carboxidivorans
Pathway
cck03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cck00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Ccar_15180
09124 Replication and repair
03420 Nucleotide excision repair
Ccar_15180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cck03021
]
Ccar_15180
03400 DNA repair and recombination proteins [BR:
cck03400
]
Ccar_15180
Enzymes [BR:
cck01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
Ccar_15180
Transcription machinery [BR:
cck03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
Ccar_15180
DNA repair and recombination proteins [BR:
cck03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
Ccar_15180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
PhoH
Helicase_C
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
AKN32132
LinkDB
All DBs
Position
complement(3463324..3465690)
Genome browser
AA seq
788 aa
AA seq
DB search
MDDKKIKVSIRNLVEFVLRGGDLDSKFVGSSRALEGTRAHQKLQKKYKQENNIERQYNAE
VSLKYNIEYKGFSFIIEGRADGVIVEKEKIVIDEIKTVNKPLELIDENYNILHMAQAKCY
AYIYAIQNDLKDIYVQLTYYSISADESKYFIKNFNIEELKLFFLDLLDKYFWWANFMEQW
IVKRNISIKNMNFPFDKYRPGQREVAVAVYNTIKQESKIFVQAPTGVGKTISTLFPAIKA
MEQGLISKIFYLTAKTITANVAQECMTNMNNKGLKIKTLVITAKEKVCFKDKPSCNPEDC
EFAKGHYDRLNDALNEILSKETLISREVIIEYAKRNKLCPFEFSLEIALWVDCIICDYNY
AFNPQVYLKSFFENGKEDYVFLIDEAHNLADRGREMFSAELYKKPFLKLKKVMTKKEPQI
AKALTSINSYMIKLRKICEEEDRNIYVQKEEIKDIYNLLRRFTKESEEWLAKNNKLEGYD
ELLQLYFDVLSYTRISEFYDNRFVTYVEKLGDDIKIKIFCLDPSYLLNEAVKRGKAAVFF
SATLSPISYFKEVLGGNEQDYTMRIPSPFPKENMKLILANRISTKYKNRESSYNLLSEYI
HGLVCGRKGNYLIFFPSYVYMRNVYDIFCQEYSDINAVIQESSMSEESKKTFLDRFKNSS
ENMVAFAVLGGMFSEGIDLKGDKLIGVGIVGVGLPQLCFERDIIMNYFNDKNNMGYEYSY
MYPGMNKVLQAAGRVIRTEEDRGIVMLMDERFSSRNYRELFPKHWEANTVVRNIKEVENI
IKNFWENK
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atggatgataagaaaataaaagtatccattcgaaatttagtagagtttgtgttaagaggc
ggagatttagattcaaaatttgtaggaagcagcagggcattagaaggaacaagagcacat
caaaaacttcaaaaaaagtataaacaagagaataatatagaaagacaatataatgctgag
gtaagtttaaaatataatatagaatataaaggatttagttttattatagaaggtcgtgca
gatggagtaatagtagaaaaagaaaaaattgttatagatgaaataaaaactgtaaacaaa
ccattagaattaatagatgagaattataatattcttcatatggcacaagctaaatgttat
gcatatatttatgctattcaaaacgatttaaaggatatatatgtgcaattaacttattat
agtataagtgctgatgaaagcaaatattttataaaaaactttaatatagaagagttgaaa
ttgttttttttagatttgttggataagtatttttggtgggcaaacttcatggaacagtgg
attgttaaaagaaatatttctataaaaaatatgaattttccttttgataaatatagacca
ggacaaagagaggttgcagttgcagtatataatactataaaacaagaaagtaaaatattt
gttcaagcacctactggggtagggaaaactatatctactttatttccagctattaaggct
atggagcaaggacttatttctaaaatattttatcttacagcgaaaaccataactgcaaat
gtggcgcaggaatgtatgacaaatatgaataataagggattgaaaataaaaactttagtc
attactgcaaaggaaaaagtatgttttaaagataaaccttcctgtaatccggaagattgt
gagtttgctaaaggacattatgacagattaaatgatgcactaaatgaaattttaagcaaa
gaaactttaataagtagagaagtaataatagaatatgcaaaaagaaataagttatgtcct
tttgaattttctttagaaatagctctgtgggttgattgtattatttgtgattataattat
gcttttaatcctcaagtatatttaaagagtttttttgaaaatggaaaagaggattatgta
tttttaattgatgaggctcataatttagcagatagaggaagggaaatgttctcggctgaa
ctttataaaaagccttttttaaaattaaagaaagtaatgacaaaaaaagaaccccaaata
gctaaagctttaactagtataaattcatatatgataaaacttaggaaaatttgtgaagaa
gaagatagaaatatttatgttcaaaaagaagaaataaaagatatatataatttattaaga
agatttacaaaagaatcagaagagtggcttgctaaaaataataagttggaaggttatgat
gaacttttacaattatattttgatgttttatcctataccagaataagtgaattttatgat
aataggtttgttacatatgtagaaaaattgggagatgacattaagataaaaattttttgc
ttggacccttcttatcttttaaatgaggcagtaaagagaggaaaagctgctgtattcttt
tctgctacattatcaccaataagttattttaaagaagtattaggaggaaatgaacaggat
tatacaatgagaattccatctccttttccaaaggagaatatgaaattaattcttgcaaac
agaatatctactaaatataaaaatagagaaagtagttataatttattatcagaatatata
catggattagtatgtggtagaaaaggtaattacttaatattttttccttcctatgtatat
atgagaaatgtttatgatatattctgtcaagaatactccgatattaatgctgtaattcaa
gaaagttctatgtctgaggaatcaaaaaagacttttttggacagatttaaaaattcttca
gaaaacatggttgcttttgctgttttaggaggcatgttttcggaaggtatagacttaaag
ggtgataaactaattggtgtaggaattgttggagttgggttacctcagctgtgtttcgaa
agagatataataatgaattattttaatgataaaaataatatgggttatgaatattcctat
atgtatccaggaatgaataaagtactgcaggcagctggcagggtaataaggacagaagaa
gatagaggaatagttatgctaatggatgaaagattttcaagtagaaattatagagaactc
tttccaaaacattgggaggccaatactgttgtaagaaatattaaagaagtagaaaatatt
ataaagaacttttgggaaaataaataa
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