Coregonus clupeaformis (lake whitefish): 121531720
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Entry
121531720 CDS
T08357
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 2
KO
K05046
solute carrier family 6 (neurotransmitter transporter, GABA) member 13
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
121531720
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cclu02000
]
121531720
Transporters [BR:
cclu02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
121531720
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Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
121531720
NCBI-ProteinID:
XP_041693057
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Position
19
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AA seq
618 aa
AA seq
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MKGDMESLPKMDPSNDHSRPLDIVPQSDEKMKERGQWGNKVEFVLSVAGEIIGLGNVWRF
PYLCYKNGGGAFFIPYLIFLFTCGIPVFFLETALGQFTSEGGITCWRKITPLFEGVGYAT
QVIVALLNFYYIIVLAWAIFYLSYSFTWDLPWASCNNTWNTDSCMEFQRRNDSFNQPRLN
ATSPVIEFWERRVLRISSGIDHIGSLNWDLVLCLAIAWVLVYFCIWKGVKSTGKVVYFTA
TFPYIMLSILLIRGVTLPGAFIGIKFYLYPDLGRLSDPQVWMDAGTQIFFSYAICLGCLT
ALGSYNKYNNNCYRDCLALCFLNSGTSFVAGFAIFSILGFMSYEQNVPISEVAESGPGLA
FIAYPRAVSMMPFSPLWACFFFIMIVFLGLDSQFVCVESLVTAMVDMYPKTFRRKNRREL
FILAVAIVSFLMGLIMLTEGGMYVFQLFDYYAASGMCLLFVAVFETVCIAWIYGADRFYD
NIEDMIGYRPGPIIKYCWMFFTPATCLGTFAFSLIKYTPLKYNNEYVYPWWGYGLGWLLA
LSSMLCVPLWVVIKMCSVEGTLKERFTILTTASTDLPKTKKEQEKLLAIFAGDGDSLRQR
HPPTKEGYFPVNEKESNC
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggcgacatggagagcctgcccaagatggacccctccaacgaccacagtcgaccc
ctggacattgtgccgcagagcgatgagaagatgaaggagaggggccagtggggcaacaag
gtggagtttgtcctctctgttgccggggagatcataggactgggcaatgtgtggcgcttc
ccttacctgtgctacaagaatggaggaggtgctttcttcatcccctacctcatcttcctg
ttcacctgtggtatcccagtgttcttcctggagacagccctgggacagttcaccagcgag
ggaggcattacctgctggaggaagatcactccactgtttgaaggagtgggctacgccaca
caagtcattgtggctctgttgaacttctattacatcatcgtcctggcctgggccatcttc
tacctgtcctactccttcacctgggacctgccctgggcctcctgcaacaacacatggaac
acagattcctgcatggagttccagaggaggaatgactctttcaatcagccacgtctgaac
gccacgtctcctgtcattgagttctgggagcggagggttctgcgtatctcctctggcata
gatcatataggatctctcaactgggacctggtgctgtgtctggccatagcctgggtacta
gtctacttctgtatctggaagggagtcaagtccactggcaaggtggtatatttcacagct
accttcccctacatcatgctgtctatcctgctcatcagaggggtcaccctgccaggagca
ttcataggaatcaagttctacctctacccagacctgggacgcctgtcagatccacaggta
tggatggatgcagggactcagatcttcttctcctatgccatctgtctggggtgtctgact
gctctgggaagctacaacaagtacaacaacaactgctacagagattgcttggcgttatgc
ttcctgaacagtgggaccagcttcgtggcaggctttgctatcttctccatcctgggcttc
atgtcttacgagcagaacgtgcccatctcagaggtggcagaatctggtcctggtctggcc
ttcatagcctacccccgtgcagtgtctatgatgcccttctctcctctctgggcctgtttc
ttcttcatcatgattgtctttttggggctggacagccagtttgtctgtgtggagagtctg
gtgacggccatggtggacatgtaccctaaaacttttcgtcgtaagaaccgcagagagctc
ttcatcttggcggtggccattgtttccttcctcatgggtcttatcatgctgacagaggga
ggcatgtacgtcttccaactctttgactactatgctgccagtgggatgtgcctgctcttt
gtggctgtctttgagactgtttgcattgcttggatttatggtgctgaccgtttctatgac
aacattgaggacatgattggctaccgtcccggacctattatcaaatactgctggatgttc
ttcactcctgctacctgcttaggtacctttgccttctccctgatcaagtacacccctctg
aagtacaacaatgagtatgtgtacccctggtggggctacggcttgggctggctcctggcc
ctgtcctccatgctctgtgttcccctctgggtggtcatcaaaatgtgttctgtggaaggc
accctaaaagagcgctttacaatcctgaccacggcatccactgacttacctaaaaccaag
aaggagcaagagaagctgctggccatctttgctggcgatggggacagcctccgtcagaga
caccctcccaccaaggaaggctacttccccgtcaacgagaaggagtccaactgctag
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