Coregonus clupeaformis (lake whitefish): 121531978
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Entry
121531978 CDS
T08357
Name
(RefSeq) neuronal PAS domain-containing protein 4A-like
KO
K26457
neuronal PAS domain-containing protein 4
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121531978
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
121531978
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Gene cluster
GFIT
Motif
Pfam:
bHLH_NPAS4
PAS_3
PAS_11
HLH
Motif
Other DBs
NCBI-GeneID:
121531978
NCBI-ProteinID:
XP_041693540
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All DBs
Position
2:24516056..24521927
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AA seq
911 aa
AA seq
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MYRSTKGASKARRDQINAEIRNLKDLLPISDADKARLSYLHIMSLASMYTRKSVFFSQES
GSAGSLEESSRFLSFHELSELVQELPGFLVLLTGEGKLLYLSDSVSEHLGHSMVDLVAQG
DSVYDIIDPTDHFIMRTNLAPPTSPDTDRLFRCRFNTSKSVRRQSAGNKLVLIRARCLFP
PSSSTTPSSYWTSNPVWMCFCSPLEAIPTHSGPGGDQVPALIPPAAENNFFLASFQSQHS
RDMRLQNAQDSVSVYLGLDVSALRSRSWYSLLHPQDLSHASTQHYSLLREGGEGRSEMVV
RVESADHSWVWLYMVLQLEAGDSPISSNNHIISETEAWSVRQQLSTEQTQLTLVLSTSTS
RQDSLSLSSPDQVFTPGSSGLSAQSFDFSMTVSSSVGSSDETGGATTEPMQVEGDPRSSI
SSIEEESFFQQQQQMPAPVQSPSAASSPTPVTVATVADLDFLTQNILLPPSFQLEPPLPT
LPLPLPPVPTSQEQQTKEFVCTPPYTPQLGVGSFLFSEPLFSFDPTGTTTPPPSTTTTAT
ATTSIAPSAPPTTASSPAPPSSLCLTGPSTDLFFPADPCSGSLYEKLPPTPDSPGDGDCT
VMTLPEVRGPLYVDVPLGPFHYPLDGLLTPEASPGKQPGLSFFSLEKEREKERAEISFLA
QHISSLAEGFYLDPLLSKLSPPSMSPSPTLAPSLATAGVDSIHMLGEFCPVKAWRGLDFP
IYQDDDDSLFEESILEAFLQDFSTPPPLSPTPSIPPPSPPNPVCWHSPSHFEGVSHFCSV
QSAHCNPTARCGATLAGEAGAMAEWEGLGEESMEIEVASSPLSSCSSITASPPLRLTASP
TFAPSTPVAPNMPAVPCAQSLLEELAALEPMFGAGASIAPGLGQQPELYQLQCHQPPQCF
HKDGSGSVPPF
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atgtatcgatcaacgaaaggcgcgtcgaaagctcgaagggaccaaatcaacgcagagatt
cggaacctgaaggacttgcttcccatatccgatgctgacaaggcacggctctcataccta
catatcatgtcccttgccagcatgtacaccagaaaatcggtcttcttctctcaagaatcg
ggatctgccggcagtctcgaggaaagctcgaggttcctgtctttccacgagctgtcagag
ctggtgcaggagctaccagggttcctggtcctgctgactggggaaggcaagctgctctac
ctgtcagacagcgtctccgagcacctcggccactccatggtggatctggttgcccagggt
gacagtgtgtatgatatcattgaccctactgaccacttcatcatgaggaccaacctggcc
cctcctacatcacctgatacagatcgtctattccgttgtcgtttcaatacttccaagtcg
gtgcgcaggcagagtgctgggaacaagctggttctgatccgggcgcgctgccttttccca
ccctcctcttctaccacccctagctcctactggacatccaatcctgtctggatgtgcttc
tgttcccctctggaggccatcccgacccactctggccctgggggggaccaagttcctgct
ctgatccctcctgctgcggagaacaacttcttcctagcctcgttccagtctcaacacagc
cgagacatgaggctccagaatgcacaagacagtgtcagtgtttaccttggccttgatgtg
tcagccctgaggtctcgctcctggtacagcctcctccacccacaggacctgtcacacgcc
tccactcagcactatagcctgttgagagaaggaggagagggtagatctgagatggtggta
cgggtggagtctgcagaccactcctgggtctggctctacatggtactgcagctggaggca
ggagacagccccatcagcagcaacaaccacatcatcagtgagacggaggcgtggtcggtg
agacagcagctgagcacagagcagacccagctgaccctggtactgagtaccagtacctcc
cgccaggacagcctgagcctgtccagcccagaccaagtcttcaccccaggcagcagtggc
ctctcagcccagtcctttgacttcagcatgactgtgtccagcagtgtgggctcctccgac
gagacagggggcgccaccactgagccaatgcaggtggagggtgaccctcgctctagtatt
tcctctattgaggaggagagcttcttccagcagcagcagcagatgcctgcccctgtccaa
agcccctctgctgcctcctcccccaccccagttaccgttgcaacggtagcagacctggac
ttcctcactcagaacattctcctgcccccctccttccagctcgagcccccgctgcccacc
ctcccccttcccctccccccagtgcccacctcccaggagcagcagaccaaagagtttgtg
tgcacgcccccctacacaccccagctgggcgtgggcagcttcctgttcagcgagcccctc
tttagcttcgaccccacaggcaccaccacaccccctccctccaccaccaccacagctaca
gccaccacctccatcgccccctccgccccacccaccacagcctccagtcctgctcccccc
tcctccctgtgcctcactggtccctccactgacctgttcttccctgccgatccctgcagt
ggctctctctatgagaagctaccccccacccctgacagccctggggatggggactgcaca
gtgatgaccttgccagaggttcggggacccctgtatgtagatgtccctttagggcccttt
cactaccccctcgacggcctcctcaccccagaggcctcccccggtaaacagcctggtctc
tctttcttctccctggagaaagagagggagaaggagagagcagagatctccttcttagct
cagcacatcagctccttagcagagggattctacctggatcctctcttatccaagctatcc
cctccttccatgtccccctcccccaccctagcaccatccctagccaccgctggtgttgac
tctatccacatgctgggagagttttgccccgttaaagcatggagaggcctggacttcccc
atataccaagatgatgatgactctctgtttgaagagagcatcttagaagcctttctccag
gacttctccacccctccgcccctctcccccaccccctccatccccccgccctctccccct
aacccagtgtgctggcactcaccctcccactttgagggggtcagccacttctgtagcgtc
caatcagcgcactgtaaccccacggccaggtgcggggcgacattggctggcgaggccggg
gcgatggcagaatgggaggggctgggagaggagtcgatggagatcgaggtggcgtcatca
cctctgtcttcctgttcctccatcacagcatcccctcccctgcgactcactgcctccccc
accttcgccccctccacgcccgtcgcccccaacatgccggccgtgccttgcgcccagtcc
ctcctggaggagctggccgccctggaacccatgtttggggcaggtgcctcgatcgcccct
ggcttggggcagcaacctgagttgtatcaactccagtgtcaccagccgccacagtgcttc
cacaaagatgggagtggaagtgttcctccgttctaa
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