Coregonus clupeaformis (lake whitefish): 121536003
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Entry
121536003 CDS
T08357
Name
(RefSeq) hedgehog-interacting protein
KO
K06231
hedgehog interacting protein
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
121536003
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Motif
Pfam:
GSDH
EGF_2
JAG1-like_EGF2
DL-JAG_EGF-like
Motif
Other DBs
NCBI-GeneID:
121536003
NCBI-ProteinID:
XP_041699208
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Position
22:1193033..1237499
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AA seq
697 aa
AA seq
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MRHLKFVLVLAIAVNVWECGDAKFGEKGEISPRRRRCYDGSMPKRLKKRERKLSVDSGAS
SGEVCHRLYPRVSCCPTRRAAYQIVHRRDARIFSTNNTECSRLLEEIKCAHCSPNAQVLF
HSPESDKVPLREPHLPRLCQDYCREFYYTCRGHIPELFQADVDEFCQYYGRRDGGLCFPD
FHRKQTRGQDSNYLGDEKVEDINRKHKHNCYCAQEVLSGLRQPVAVVHCGDGSQRLFVLE
KEGFVRVLTHNMELLKEPFLDIHKLVQTGLKAGDERGLLGLTFHPNYKKNGKLYVSYTTN
QERWAIGPHDHILRVVEYTVSRKNPNVVDSRTTRMLIEVAELHRKHLGGQLLFGPDGLLH
IVLGDGMITLDDMEEMDGLSDFTGSVLRVDVDTDCCTAPYSIPRNNPYFNSTNQPPEIFA
HGLHDPGRCAVDRHYTDNNGSFLIVCTDASGRNASAGRILEITKGKDYENEASIFDLATS
GGAAPVGGFIYRGCQSRRLYGSYVFGDKNGNLRILQKGSVATRGQWQEKALCLGTSSSCG
SALVGHILGFGEDQLGEVYILATSKSMAQSHSGKLYKLVDPKRPAVPKECQRQVEAPELL
GTACSRQCKNGYCTPTGKCCCSTGWEGPFCRVAKCEPACRNGGVCVEPNKCLCKSGYSGA
QCEKGERGMPSDQEKDGILDHIIDMTSYLLNLTSYIV
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgaggcatttgaaatttgtactagtgttggctatcgcagtcaacgtttgggaatgtggg
gatgcgaaatttggcgagaagggagaaataagcccgaggagaaggagatgttacgacggg
agcatgcccaagcgactgaagaagagggaacgaaaactgtcagtggacagcggtgcaagc
agcggggaagtttgtcacaggttgtaccctcgtgtgtcatgctgccccaccaggcgtgct
gcttatcagatagtccaccggcgggatgccaggatcttctccaccaataacacagagtgc
agccgtctcctggaggagatcaagtgtgcacactgttcgcccaacgcccaagtgctgttc
cactcccccgagtcggacaaggtccccctcagggagccccatctgccacgcctctgccag
gactactgcagagagttttactatacctgccgcggacacataccagagctgttccaagcc
gatgtggatgagttctgtcaatactacggaaggagggacggaggcctgtgcttcccagat
ttccaccgaaagcaaacacggggccaggactccaactacttgggagatgagaaagtggaa
gacatcaacaggaagcacaagcacaactgctactgtgcccaggaggtgttgagtgggctg
aggcagccagtggccgtggtgcactgtggggacggatcccagcgcctctttgtcctggag
aaggagggcttcgttcgggtgctgacccataacatggaactgctgaaagagcctttcctt
gacatccacaagctggtgcagactggactcaaggcaggagatgaaaggggtctgctaggc
ctcacattccaccccaattacaagaagaatggcaagctgtacgtctcctacaccaccaac
caggagcgctgggccatcggaccgcacgaccatatcctgcgcgtggtcgagtacaccgtc
tccaggaaaaacccgaatgtggtggacagtaggaccacgcggatgctgatagaggtggcg
gagctgcacaggaagcatctgggaggacagctgctgtttggccctgacggcctcctgcac
atcgtcttgggagacggcatgatcaccctggatgacatggaggagatggacggcctcagt
gatttcacagggtctgtgttgagggtggacgttgacacagactgctgcacggctccctac
tccatacccaggaacaacccctacttcaacagcaccaaccagccaccagaaatctttgcc
cacggactgcatgacccaggcaggtgtgccgtggaccggcattatacggataacaacggg
agtttcctgattgtgtgcacggatgccagcgggaggaacgcatcggcagggagaatactg
gagatcactaaggggaaagactacgagaatgaggcgtccatctttgacctggcgaccagt
ggaggagcagcacctgtgggagggttcatctacagaggctgtcagtccagaaggctttac
gggagctatgtgttcggagacaagaacggaaacctgcggatcctccagaagggctcagtg
gcgacaaggggccagtggcaggagaaggctctgtgtctggggaccagcagctcctgtggc
tccgctctggtgggacatatcctgggcttcggagaggaccaactaggtgaagtctacatc
ctggccaccagtaaaagcatggctcagtcacacagtgggaagctctacaagctagtggac
cctaaaaggcccgcggtccctaaggagtgtcagagacaggtggaggccccggagctgctg
ggaacggcctgctcacggcagtgtaagaacggatactgcacccccaccgggaagtgttgc
tgcagcaccggctgggagggacccttctgcagagtggctaaatgcgagccagcctgtcgt
aatggaggcgtgtgtgttgagcccaacaagtgcctgtgtaagagcggctactcgggcgcc
cagtgtgagaagggcgagcggggcatgcctagcgaccaggagaaggacggcatcctggac
cacatcatagacatgacctcgtacctgctgaacctcaccagctacatcgtatag
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