Coregonus clupeaformis (lake whitefish): 121539586
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Entry
121539586 CDS
T08357
Name
(RefSeq) gamma-aminobutyric acid receptor subunit rho-2-like
KO
K05190
gamma-aminobutyric acid receptor subunit rho
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04080
Neuroactive ligand-receptor interaction
cclu04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
121539586
04082 Neuroactive ligand signaling
121539586
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121539586
Ion channels [BR:
cclu04040
]
Ligand-gated channels
GABA-A
121539586
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Gene cluster
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Motif
Pfam:
Neur_chan_LBD
Neur_chan_memb
Motif
Other DBs
NCBI-GeneID:
121539586
NCBI-ProteinID:
XP_041704137
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Position
20:complement(59546078..59583378)
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AA seq
524 aa
AA seq
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MRTKLCTCRITERGFWSHLWNFRLARMTMPYLAKPLFLLFCLVVTGECRKHGHRVRRWTG
TVETAKHGTETAKHGTSLTKKPPDVTKNRKLKTEQLLKVDDHDFTMRPAFGGPAIPVGVD
VQVESLDSISEVDMDFTMTLYLRHYWKDERLTFTSSTNKSMTFDGRLVKKIWVPDVFFVH
SKRSFIHDTTTDNIMLRVFPDGHVLYSLRVTVTAACNMDFSRFPLDTQTCSLELESYAYT
DEDLMLYWKSGDESLSTDDRISLSQFLIQKFHTTSHLAFYSSTGWYNRLYINFTLRRHIF
FFLLQTYFPATLMVMLSWVSFWIDHRAVPARVSLGITTVLTMSTIITGVNASMPRVSYIK
AVDIYLWVSFVFVFLSVLEYAAVNYLSTVQDRRERKMRDEIRERARSQSLPCTCGMSQTR
TMILDGTYSEADTNSLAGYTSGTMVPEEDVEMPREVMTEKQPPGEHMVVHLSVSSESTTT
KKKGIRALKIIQNTHAIDKYSRMLFPGSYILFNFIYWCSYCIGA
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atgcgtacaaagctgtgtacctgtaggataactgaacgaggcttttggagtcacttgtgg
aattttagacttgcacgcatgacgatgccttatctggctaaaccgctgtttttactcttc
tgtctggtcgttaccggggaatgccgtaagcacggacaccgagtacggagatggacggga
accgtggagacggcaaagcatggcacagagacagcaaagcatggcacttccctgacaaag
aagcctccagatgtgaccaaaaaccgcaagctgaagacagagcagcttctgaaagtagat
gatcatgatttcaccatgaggccggcattcggaggcccggctattccagtcggagtggac
gtacaagtagaaagcttggacagtatctcagaagtagacatggacttcaccatgaccctg
tacctgagacactattggaaggacgaacgcctgaccttcaccagctccaccaataagagc
atgacattcgacgggcgtctggtgaagaagatctgggttccagatgtgttttttgtgcac
tccaagagatccttcatccacgacaccaccacagacaacatcatgctcagggtctttccc
gacggacacgtcctctacagcctgagggtgacagtgacagcagcctgtaacatggacttc
agccgcttccctctggacacccagacctgctcactggagctggagagctatgcctatacg
gatgaggatctgatgctgtactggaagagtggggatgagtccttgagtacggacgaccgt
atctccctgtctcagttcctcatccagaagttccacaccacctctcacctggcgttctat
agcagcacaggctggtacaatcgtctgtacatcaacttcaccctgcggagacacatcttc
ttcttcctgctccagacctacttccctgccaccctcatggtcatgctgtcctgggtgtcc
ttctggatagaccacagggccgtcccagcccgcgtctcgctgggtatcaccacagtgctc
accatgtccaccatcatcactggagtgaacgcctccatgcccagagtgtcctacatcaag
gctgtggacatctacctgtgggtcagcttcgtgtttgtcttcctgtccgtgctggagtac
gctgccgtcaactacctgtccactgtgcaggaccgcagggaacgcaagatgagagacgag
ataagggagagggccaggtcacagtcgctgccctgcacctgtggcatgtcccagacgagg
accatgatattagacgggacctacagcgaggcggacaccaacagcctggccggctacacc
tcaggaactatggtgcccgaggaggacgtggagatgccccgtgaggtgatgaccgagaag
cagcctcctggggagcacatggtggtccacctgtctgtcagtagcgagtccacaaccacc
aagaagaaaggtatccgggccctcaaaattatccagaatacacacgccatcgacaagtac
tccaggatgttattccctggctcctatatcctattcaacttcatctactggtgttcatac
tgtataggagcgtag
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