KEGG   Coregonus clupeaformis (lake whitefish): 121539633
Entry
121539633         CDS       T08357                                 
Symbol
tdp1
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 1 isoform X1
  KO
K10862  tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    121539633 (tdp1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cclu03400]
    121539633 (tdp1)
DNA repair and recombination proteins [BR:cclu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     121539633 (tdp1)
SSDB
Motif
Pfam: Tyr-DNA_phospho
Other DBs
NCBI-GeneID: 121539633
NCBI-ProteinID: XP_041704209
LinkDB
Position
25:34670311..34755354
AA seq 641 aa
MSLENQHGKWTLSSSDDDNDDPRPSASNNNPPPDQHTSSDSNHNSPKIASYFHQPKHDPD
LPLSIEVKPEPKSDPVTAAPPLSIGSEARQASQASQLKPVKYESNQSSPFLAGKRKKVDD
SISGWALSESDDDDDKAKGQSSGQKDPPPKRLSPKPKKAKVEERPPSPHGRTYYIDEPDD
FFETSVPPVNDTYRFYLNKVTGLEKRYNTGALHIKEILSPLFGTLKESVQFNYCFDIAWM
LQQYPPVFRDRPVLIVHGDKREAKARLLQQAQPYSQVRFCQAKLDIAFGTHHTKMMLLWY
EEGFRVVILTSNMIRADWYQKTQGLWMSPLYLRLPEGSPETAGESPTLFKRDLLEYLGAY
RAPELTDWIQRIREHDLSETRVYLIGSTPGRYLGSDMERWGHLRLRKLLHDHTRPIPNEE
KWPVIGQFSSIGSMGLDKTKWLAGEFQRTLTTLGKSSLRPDPPMHLVYPSVDDVRTSLEG
YPAGGSLPYSIQTAQKQLWLHSYFHRWQAETTGRSHAMPHIKTYMRASPDFTQLAWFLVT
SANLSKAAWGALEKNNTQVMVRSYELGVLYVPSAFSMSTFPIQMDVFPATTSSTSFPVPF
DLPPKRYSSKDLKTTIFGSCGSINVFQGRTLHRQEYEPLQL
NT seq 1926 nt   +upstreamnt  +downstreamnt
atgtcactggagaatcagcacgggaaatggacactctccagcagcgatgacgacaacgat
gacccacgcccttctgcctcaaacaacaaccccccgcctgaccaacacacatcttcagac
tccaaccacaactcccccaagatagcctcctacttccaccaacccaaacatgatcctgat
cttccactttccatagaggtgaaacctgaacctaaatctgacccagtgactgccgccccc
cccctctctattggctctgaggccagacaggcatcacaggccagccaattgaagccagta
aagtacgaatccaaccaatccagcccctttctggctggtaagaggaagaaggttgatgat
tcaatttccggctgggctctctcagaaagtgatgatgatgatgataaggctaaaggtcaa
agttcaggacagaaagacccgcctcccaagaggttgagccccaagccgaagaaggcaaag
gtggaggaaaggcctcccagcccccatggtagaacctactacattgacgaaccggatgac
ttctttgagacgagcgtgcctcctgtcaatgacacctacaggttctacctcaacaaggtc
acagggttggaaaagaggtacaacactggggctttgcacatcaaagaaatcctctctcct
ttgttcgggacactgaaggaatctgtgcagttcaactactgctttgacattgcctggatg
ttgcagcagtacccacctgtgttcagagataggcctgttctaattgtccacggagacaag
agagaggccaaggcccgtctgctgcagcaagcccagccctacagccaagtccgcttctgc
caggccaaactggatattgccttcggaacacaccacacgaaaatgatgttgctgtggtac
gaggaaggcttcagagtggtcatccttacctccaacatgatcagagcagactggtaccag
aaaacacaggggttgtggatgagtcctctgtatttacggttacccgaggggagtccagag
actgcgggggagtctcccacccttttcaagcgggacctcctggagtacctgggggcctat
cgtgcccccgaactcaccgactggatccagaggatcagagagcatgacctgtctgagacc
agggtgtatctgataggttctactccagggaggtacctgggctcagacatggagaggtgg
ggtcacctgaggttgagaaaactgttgcacgaccacacacggcccatccccaacgaagag
aagtggcccgtcattggtcagttctccagcatcggctccatgggattggacaagaccaag
tggttggcaggggagttccagcgcaccctgaccaccctgggcaaatcgtctcttcgccca
gatccccccatgcacttggtctacccgtcagtggacgatgtgaggaccagtctggagggg
tatccagccggtggctctctaccctacagcatccagacagctcagaaacaactctggctc
cacagctacttccaccgctggcaagctgagacgacggggaggagtcatgccatgccgcac
atcaagacctacatgagggcttcgccagacttcacacaactagcctggttccttgtcaca
agtgctaacctgtccaaagcagcgtggggggctctggagaagaacaacacgcaggtgatg
gttcgatcatacgaactgggagtcctctatgtgccctctgccttcagcatgagtaccttt
cccatccagatggatgtgtttcctgccaccacttcctctacctcatttcctgtgcccttc
gacctgccacccaaacgctactcgagtaaagacttgaagaccaccatctttggcagctgc
ggcagcatcaatgtcttccaagggaggacactccaccggcaggaatatgagcctctgcag
ttgtga

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