Coregonus clupeaformis (lake whitefish): 121543092
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Entry
121543092 CDS
T08357
Symbol
tap2t
Name
(RefSeq) antigen peptide transporter 2
KO
K05654
ATP-binding cassette, subfamily B (MDR/TAP), member 3 [EC:
7.4.2.14
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu02010
ABC transporters
cclu04145
Phagosome
cclu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
121543092 (tap2t)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
121543092 (tap2t)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
121543092 (tap2t)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cclu02000
]
121543092 (tap2t)
Enzymes [BR:
cclu01000
]
7. Translocases
7.4 Catalysing the translocation of amino acids and peptides
7.4.2 Linked to the hydrolysis of a nucleoside triphosphate
7.4.2.14 ABC-type antigen peptide transporter
121543092 (tap2t)
Transporters [BR:
cclu02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB2, 3, 8, 9, 10 subgroups
121543092 (tap2t)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
Rad17
AAA_16
AAA_22
RsgA_GTPase
AAA_30
nSTAND1
AAA_5
RNA_helicase
AAA_29
AAA_15
Motif
Other DBs
NCBI-GeneID:
121543092
NCBI-ProteinID:
XP_041708762
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All DBs
Position
1:21726650..21736843
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AA seq
713 aa
AA seq
DB search
MARLKTYGLVLLYDLVLWGALWTGLVLLEFSSSGGLVGLWAFGALRWVLHHSINLVLTDG
KPQPVLRRWVAVLCLLPPVFESGQMVMLPALTADNLGPVPDPSMVVLALVSSTVACLAWE
LGFPDDGGNQGKEKEKKQEARALLMRMVRYCRPDALYLAAAFLFLSLAVICETFIPYYQG
KVIDTLSGQYQHNSFMYAIGGMGLVSLGSALCSGLRGGLFMCSLSRLNKRMRHMLFHNLV
QQDIHFFEENKPGSLASRLGHDVDKMGRSVALNSNVLVRSLVKMAGMLVLMLGLSWQLTL
LTMVEMPLLTLLQTKYNTYNQKFIKQLQDCQAQTKELASQAIGAVRTVRSFRAEEKELDR
YNQALERMYKVQEHKGIVSAVHLLLRRMVTVGLKVAMLFLCRRLISSGQLSIGSVLAFVL
FQKDMVTNMKQLVYVFGDTLSTVGAAAKVFTFLDRKPNQKEAGELAPAKLQGKLAFHNVT
FYYPSRPDTPALKAVSLDLHPGKMTALVGPSGCGKSSCVSLLARLYEPKEGQVLLDGQPL
HCYQHQYLHQKMALVSQEPVLFSGSIRYNIEYGLLGCTLEKVKEAAKSANVHNFICTLEQ
GYNTDVGECGGQLSSGQKQCIAIARALVREPLVLILDEATSGMDINTQHAVQGILAGSVG
QTVLVVAHQLQTVEKADHIIFMEGGEVVEQGTHQELMASKGRYHRLKEELFED
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atggctcgtttaaaaacatatgggttggttcttctctatgacctagtgctgtggggggca
ctgtggactgggttagtgctacttgagttctccagtagtggaggactggtggggttatgg
gcctttggagccctaaggtgggtattgcaccattcaatcaacctggtgctcactgatgga
aagccacagccagtgctgaggagatgggtggcagtgctctgcctcttgcctcctgtgttt
gaaagtggacagatggtcatgttgccggcactgactgccgacaacctgggtccggtgcct
gacccaagcatggtggtcttggccctggtatcctccactgtggcctgcctggcatgggag
ctgggcttccctgatgatggagggaaccaggggaaggagaaggagaagaaacaggaggcc
agggcactgttgatgaggatggtgcgatactgcagaccagatgccctctacctggctgca
gccttcctcttcctcagccttgctgtcatctgtgagacctttatcccttactaccagggg
aaggtcattgatacgctgagtggtcagtaccagcacaacagcttcatgtatgccattgga
ggcatgggactcgtctcactaggaagtgctctgtgctcaggcctgcgagggggcttgttc
atgtgcagcctatccagactcaacaagaggatgagacacatgctgtttcacaacctggtg
caacaggacatacacttctttgaggagaacaaaccaggaagccttgcctcacgcctgggc
catgatgtggacaagatgggacgctctgtggctctgaacagcaacgtgctggtgcgcagc
ctggtgaagatggctggtatgctggtcctgatgctgggcctgtcctggcagctcaccctg
ctcaccatggtggagatgcccctcctcaccctgctgcagaccaaatataacacatacaac
cagaagttcattaagcagctgcaggactgccaggcccagaccaaggagctggcatcccag
gccattggggcggtgagaacggttcgcagcttcagagctgaggagaaagagctggatagg
tacaaccaagcactggagaggatgtacaaggtccaggagcacaagggcatcgtcagtgct
gtccatcttttactgagaaggatggtgacagtgggcctgaaggtggccatgctgttcctg
tgtcggaggctcatctcgtctggccagctgagcatcggcagtgtgctggctttcgtcctc
ttccagaaagacatggtgaccaatatgaagcaacttgtgtatgtctttggagacacgctg
agcactgtcggggcggcagccaaggtgttcacatttctggacagaaagcccaatcagaaa
gaagcaggagagctggctcctgcaaagcttcaggggaaacttgctttccacaatgttacc
ttctactatccctcacgcccagatacacctgcactgaaggctgtgagtctggacctgcat
ccagggaagatgacagcgctggtggggccctctggttgcgggaagagctcctgcgtcagc
ctgctcgcgaggttgtatgagcccaaggagggccaggtgctgctggatggacagcccctg
cactgctaccagcaccagtacctgcatcagaagatggccctggtgtcccaggaaccagtg
ctcttctctggctctatcagatacaacatagagtacggcctcctgggatgcaccctggag
aaggtgaaagaggccgcgaagagcgccaacgtccacaactttatttgtacgctggaacag
ggctacaacacagatgtaggtgagtgtggagggcagctgtcttctggacagaagcagtgc
atcgccatcgccagagctctggttcgagagccactggtcctcatcctggacgaggcaacc
agcggcatggacatcaacacacagcatgcggtgcagggcatcctggcaggctcagtgggc
cagacagtgttggtggtggcccaccagctgcagactgtggagaaggctgaccacatcatc
ttcatggagggtggggaggtggtggagcaaggcacacaccaggagctaatggctagcaag
gggcgctaccatcggctcaaagaggaactctttgaggactga
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