KEGG   Coregonus clupeaformis (lake whitefish): 121550529
Entry
121550529         CDS       T08357                                 
Name
(RefSeq) splicing factor 3A subunit 1 isoform X1
  KO
K12825  splicing factor 3A subunit 1
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    121550529
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cclu03041]
    121550529
Spliceosome [BR:cclu03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    121550529
 Complex B
    121550529
 Complex C
   U2 SnRNP specific factors
    121550529
SSDB
Motif
Pfam: PRP21_like_P Surp ubiquitin Rad60-SLD Ubiquitin_2
Other DBs
NCBI-GeneID: 121550529
NCBI-ProteinID: XP_041718755
LinkDB
Position
18:complement(56081953..56108962)
AA seq 790 aa
MPPGPVQIVHLEPNSKADEPTEEAPATKPIVGIIYPPPEVRNIVDKTASFVARNGPEFEA
RIRQNEINNPKFNFLNPNDPYHAYYRHKVNEFKEGKGQEPSAAVPKVMQQQALQNSQQLP
QKLQAQVIHETVVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKE
QRNYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLLIKLKREAENPREVLDQVRYRVEW
AKFQERERKKEEEEREKERVSYAQIDWHDFVVVETVDFQPNEQGHFPPPTTPEELGARIL
TQERYDKFGESEEVEMEVESEDEEDDEREERDDGRPTQPDQDTQLQDMDEGSDDEDDGKA
PLPPDNPMPPPLPPTPDQVIIRKDYDPKASKPQPPAKTLDEYLISPITGERIQASKMQEH
MRIGLLDPRWLEQRDRGIRERQIEDEVYAPGMDIESSLKQLAERRTDIFGVEETAIGKKI
GEEEIQKPEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAKGLVQEDESKEKIGPS
KPELYHHHHQSPLISSAPLLPKPNLPMNTIARAPPSMLPPVRTTLLSAVPVIPRPPMAPV
PMRLAPGQVLTPMPPMMHAPRINVVPMPQPPHMMAPRPPPMVVPTAFVPAPPVPQPPRPR
PDPQPPSQPPPPHNDEPASKKMKTEDNLMPEEEFLRRYKGSVSITVQVPNMQDKTEWKLS
GQALNFTVPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNINNGSVIHL
ALKERGGRKK
NT seq 2373 nt   +upstreamnt  +downstreamnt
atgccgccagggcctgtacaaattgttcatcttgagcccaacagcaaggcagatgaacct
acagaggaagccccagcaacgaaacccatagttgggatcatctatccacctcctgaggtc
cgaaacatcgttgataagactgccagctttgttgccaggaatggaccagagttcgaggca
aggatccgtcagaatgagatcaacaacccaaagttcaacttcctgaaccccaacgacccc
taccatgcttactaccgccacaaggtcaatgaattcaaggagggcaagggccaggagcca
tctgcggctgtgccaaaggtcatgcagcagcaggccctgcagaactcacagcagcttcct
caaaagttgcaggcccaggtgattcatgagacagtggtgccaaaggagcctccgcccgag
tttgagttcattgctgaccctccttcgatctcggcattcgacctggatgttgtcaagctg
accgcccagtttgttgctcgcaacgggcgccagttcctcacacagctcatgcagaaagaa
cagcgaaactaccagtttgacttcctgcgacctcaacacagcctcttcaactacttcacc
aagctggtggagcagtacactaagattctgatccctcccaagggactgctgataaagctg
aaaagagaggctgagaaccccagggaggtgctggaccaggtgaggtaccgcgttgagtgg
gcgaagttccaggaacgtgaaaggaagaaggaggaggaggagcgggagaaagagcgtgtg
tcctacgctcaaattgactggcatgactttgtagtggtggagaccgtggacttccagcct
aatgagcaaggccactttcccccacccaccacacctgaggagctgggagctcgcatcctg
acccaggagcgttatgacaagtttggagagagcgaggaggtggagatggaggttgaaagt
gaggatgaggaggacgatgagcgggaggagcgggatgatgggcgtcccacacagcctgat
caggacacacagctgcaagacatggatgagggttctgatgacgaggatgatggcaaggca
ccattgcccccagacaaccccatgccacccccactgccccctactccagaccaggtcatt
atccgcaaggactacgaccccaaagcctccaagccccagcctccagccaagactctggat
gagtacctcatctctcccatcacgggtgagaggatccaagccagtaagatgcaggagcac
atgcgcattggactgctggatccccgctggctggagcagagggaccgcggcatcagagag
aggcaaatcgaggacgaggtttacgcccctggcatggacattgagagcagcctaaaacag
ctggctgagaggcgtactgatatctttggtgtggaggagacagccatcggtaagaagatt
ggagaagaggagatccagaagcctgaggagaaggtgacctgggatgggcactctggcagc
atggcgcgtactcagcaggcagcacaggccaacatcaccctacaagagcagattgaggcc
attcacaaggccaagggactggtgcaggaggatgagagcaaagagaagattggaccgagc
aagcctgagctttaccatcatcatcatcaatcaccccttatctcctctgccccccttctg
cccaaacccaaccttccaatgaacacgattgctcgggcccctccttctatgctgccccct
gtacgcaccactctcctgtcagctgtgcctgtgattccacggccccccatggcccctgtg
ccgatgcgcctagccccagggcaggttctaacacccatgccccccatgatgcatgctccc
cgcatcaacgtggtgcccatgccccaaccacctcacatgatggcccccagaccaccaccc
atggtggtcccaactgcatttgtccctgcccctcccgtcccgcagcccccccgcccccgc
cctgacccgcagccaccttcccagccacccccaccccataatgatgagcctgccagcaag
aagatgaagacagaggacaaccttatgccagaggaggagttcctccgcagatacaagggt
tcagtgtcaatcacagtgcaagttcccaacatgcaggacaagactgaatggaagctaagt
ggacaagcgctcaatttcactgtcccactcacagatcaggtgtctgttattaaagtaaaa
atccatgaagccactggcatgccagccggaaagcaaaagctacagtatgagggaattttc
ataaaagattccaactcgctggcctactacaacataaacaatggttcagtcatacacctg
gcactgaaggagagaggtgggagaaagaagtga

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