Coregonus clupeaformis (lake whitefish): 121569823
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Entry
121569823 CDS
T08357
Name
(RefSeq) cadherin-20
KO
K06807
cadherin 20, type 2
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cclu04515
]
121569823
Cell adhesion molecules [BR:
cclu04515
]
Cadherins
Major cadherins
121569823
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_CELSR2_9th
TAS2R
Motif
Other DBs
NCBI-GeneID:
121569823
NCBI-ProteinID:
XP_041736975
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Position
7:complement(59917866..59962194)
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AA seq
806 aa
AA seq
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MGYRIHHHLGGGRPVYILLLPLALALLTLLSEAQGRMDRARTEEESRAGLLRRVKRGWVW
NQFFVLEEYTGLEPLYIGKLHSDMDLGDGSIKYILSGDGAGTTFTIDDSTGDIHAIKRLD
REVKAQYLLRAQAWNRQTDRPLEPESEFIVKIQDINDNEPKFLDGPYQATIPEMSTIGTE
VIRLTATDADDPTYGNSARVVYSILQGQPYFSVEPKTGVVRVSLAGMDREVRENYSVIIQ
AKDMGGQLGGLAGTTVVNITLSDVNDNPPMFDQKLYQMSVLESAPVGSVVGRIRAKDRDI
GINAEMRYSIIDGDGRDTFDISTDPTNLFGIITIKKPLNFESKASYTLKIEGANTHPDHH
FLDKGPFSHVTIVHISVEDIDEPPEFVSAAYYIEVSEEAEIGTVFKTVSARDPDAANNSI
RYSIEMTTDLGKYFYIDITSGALMTVLALDREELSWHNITVLAMEMNNPSMIGSVSVAVK
ILDVNDNPPSLTQYFEAFVCESAKAGQLIQTMTAVDPDDPLGGQHFYYSLAPEAANNPNF
TLRDNQDNTAWILTRRGGWSQQDQSVYYLPIFISDGELPVQTSTSTLTIRVCSCDVEGNV
MSCNAEAYHLPASLSRGALIAILACIFVLLVMILLMLSLRSHHKKPYLHDEEDNVHENIV
RYDDEGGGEEDTEAFDIAAMWNPCEAHLVEKQRQDMLPVIESLSRYVPLACMGWPGSVCV
GGDRNVQGYVLSKLLEADLDPCAPPYDSLQTYAYEGEGSVAESLSSLQSGCSNTDHEYDY
LNDWGPRFKKLAEMYGVLETNNPPMW
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atgggatatcgaattcaccaccatcttgggggtggaaggcctgtctacatcctactactc
ccactagctctagccctgctgaccctgttgtctgaggcccagggtcgtatggatagagcc
aggacagaggaggaaagtagagcagggctgttgaggagggtgaagagaggctgggtatgg
aaccagttctttgtgctggaggagtacactggactggagccgctatacatcggaaagctc
cactcagacatggacctaggggatggctcaatcaagtacatactatcaggagatggtgcg
ggcaccaccttcaccattgacgacagtacgggggacatccatgccatcaagaggctggac
cgcgaggtcaaggcccagtacctgctgcgagcccaggcctggaacagacagacagatcga
cccctagagcccgaatctgagttcattgtcaagatccaggacatcaatgataatgaacct
aagttcctggatgggccctaccaagccaccatacctgagatgtcaaccataggcactgag
gtgattcggctgaccgctacagacgctgatgaccctacatatggtaacagtgccagggtg
gtctacagcatcctgcaaggacagccatacttctctgtggagcccaagactggcgtggtg
cgtgtgtctctggcgggcatggaccgagaggtcagagagaactattccgtcatcatccag
gccaaggacatgggaggccagctagggggtctggctggaaccaccgtcgttaacatcacc
ctcagtgacgtcaacgataacccacccatgtttgatcagaagctgtatcagatgagtgtt
ctggagtcggctccggtggggtctgttgtgggtcgtatccgggcgaaggatcgtgacatt
ggcatcaacgcagagatgaggtacagcatcatcgacggagacgggagggacaccttcgac
atcagcacagaccccaccaacctgtttggcatcatcaccatcaaaaagcctctgaacttt
gagagcaaagcaagttacactctgaagatagaaggagccaacacacacccggaccaccat
ttcctggacaagggcccgttcagccatgtcaccattgttcacatcagcgtagaggatata
gacgagcccccagagtttgtctctgctgcgtattacatagaggtctctgaagaagcagag
atcggcacagtgttcaagacggtctctgccagagaccctgatgctgccaataactccatc
aggtattccatagagatgaccactgacctggggaaatatttctatattgacatcacttcc
ggggcgttgatgacggtgctggcgctggacagagaagagctatcctggcataacatcacc
gtcctggccatggagatgaataaccccagtatgatcgggagtgtgtctgtagctgtgaag
attctggacgtgaatgataaccctccatcgctgacacagtactttgaagcttttgtctgt
gagagtgccaaggctggacagctgattcagacaatgacggcggtagacccagatgatcct
ctgggaggtcagcacttctactacagcctggcaccagaggctgctaacaaccccaacttc
accctcagagacaaccaagacaacacagcatggatcctgacgcggcgtgggggctggtct
cagcaggaccagtcagtctactaccttcctatctttatctcagacggagagctgccggtc
cagaccagcaccagcaccctgaccatccgtgtgtgtagctgcgatgtggagggcaatgtt
atgtcctgtaatgctgaggcctaccacctaccggctagtctgagcagaggggcgctcatt
gccatactggcatgtatcttcgtgttgctcgtgatgatcttgctcatgttgtccctccgg
agccaccataagaagccctacttgcacgacgaggaagacaacgtccacgagaacatcgtc
cgctacgatgacgaagggggcggagaggaagacacagaggccttcgacattgcagccatg
tggaacccctgcgaggcccacctagtggagaagcaacgtcaggacatgcttcccgtaatc
gagagcctgtcgcgctacgttccccttgcatgtatgggctggccagggagcgtttgtgtt
ggtggagacagaaatgtgcaggggtatgtgctatccaagctcctggaggcggatctggac
ccctgcgccccgccttacgactccctgcagacctacgcctatgagggcgagggatcggtg
gccgagtccctgagctcgctgcagtctgggtgttccaataccgatcacgagtatgattat
ctcaatgactgggggccaaggtttaagaaactggcagagatgtatggggttctggagaca
aacaaccctcccatgtggtag
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