Coregonus clupeaformis (lake whitefish): 121573650
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Entry
121573650 CDS
T08357
Symbol
taf1
Name
(RefSeq) transcription initiation factor TFIID subunit 1 isoform X1
KO
K03125
transcription initiation factor TFIID subunit 1 [EC:
2.3.1.48
2.7.11.1
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121573650 (taf1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
cclu01001
]
121573650 (taf1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cclu03021
]
121573650 (taf1)
03036 Chromosome and associated proteins [BR:
cclu03036
]
121573650 (taf1)
Enzymes [BR:
cclu01000
]
2. Transferases
2.3 Acyltransferases
2.3.1 Transferring groups other than aminoacyl groups
2.3.1.48 histone acetyltransferase
121573650 (taf1)
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
121573650 (taf1)
Protein kinases [BR:
cclu01001
]
Serine/threonine kinases: Other
TAF1 family
121573650 (taf1)
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
121573650 (taf1)
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Histone modification proteins
HATs (histone acetyltransferases)
121573650 (taf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3591
Bromodomain
TBP-binding
zf-CCHC_6
Cac1_C
Motif
Other DBs
NCBI-GeneID:
121573650
NCBI-ProteinID:
XP_041741718
LinkDB
All DBs
Position
9:complement(7471952..7497145)
Genome browser
AA seq
1986 aa
AA seq
DB search
MSDSDSDEDQDRPFSLTGFLFGNINEDGQLEGDSVLDTESKKHLAGLGSLGLGNLITEIT
ASEEDDPDEDGDTGGTDAEGWVKNDADAVDYSDINEVAEDETKKYRQAMGSLQPTRRTDD
EDEDDYDADCEDIDAKLMPPPPPPSLTTPGGKKEDSSPTAASVGDEGDGIILPSIIAPSS
LVDKVDFSSSSDSESETDRPSTGSGSGGPPACLSLPLAGIMQKDAAKALPGVTQLFPEFR
PGRVLRFLRLFGPGKNMPSVWRSARRKRKRKHRDPQPETPPSEGAEPMEQQGPEKISGWD
YEYAPPPPPEQCLSDDEITMMAPVESKFSQTSGDGDKVAESRPKVAEWRYGPAQLWYDMM
GVPEDGSGFHYGFKLKEEEEDEQEKQERPEPPPPPVPQPPKEEGSGDEKDEQALENELFL
MVTQLQWEDDIIWNGEDVKHKGTKTQRASLAGWLPSSMTRNANAYNAQQGLCRSNSQLVP
PTPPPMPKAPSIGSGSKRDKHHHDHYASHEDDAPWFSIFPIDNEELVYGRWEDNIIWDDQ
AMDRMLSPPVLTLDPNDENIILEIPDEKESEHTSHSPSKENKKESALKKSRILLGKTGVI
KEEPQQNMSQPEVKDPWNLSNDEFYYPKQQGLRGTFGGNIIQHSISAVELRQPFFPTHMG
PMKLRGFHRPSLKKYSFGTLSQPGPHAAQPLLKQIKKKAKMREQERQASGGGDMFFMRTA
QDLTGKDGDLILAEYSEEYPPLIMQVGMATKIKNYYKRKPGKDPGAPDCKYGETVYCHTS
PFLGSLHPGQLLPAFENNLFRAPIYLHKMPETDFLVLRTRQGYFIRELVDIFVVGQQCPL
YEVPGPNSKRANTHIRDFLQVFIYRLFWKSKDRPRRIRMEDIKKAFPSHSESSIRKRLKL
CADFKRTGMDSNWWVLKPDFRLPTEEEIRAMVSPEQCCAYYSMLVAEQRLKDAGYGEKSF
FAPEEENEEDFQMKIDDEVRTAPWNTTRAFIAAMKGKCLLEVMGVADPTGCGEGFSYVKV
PNKPTQQKAQDDREPQPAKKTVTGTDADLRRLSLKNAKQLLRKFGVPEEEIKKLSRWEVI
DVVRTMSTEQARSGEGPMSKFARGSRFSVAEHQERYKEECQRIFDLQNKVLESTEVLSTD
TDSSSAEDSDFEEMGKNIENMLQNKKTSSQLSREREEQERKELQRMLMGEESDRDHKGRK
ARKGFSSALSTGSHKDDDTSSVTSLNSSATGRRLKIYRTFRDEDGKEYVRCETVRKPSVI
DAYTRIRTTKDDEFIKKFALFDEQHREEMRKERRRIQEQLRRLKRNQEKDRFKSPPEKKA
KKIKERPDLKVKLKCGACGAIGHMRTNKFCPLYYQTNAPPSNPVAMTEEQEEELEKTVIH
NDNEELIKVEGTKIVLGKQLIESADEVRRKSLVLKFPKQQLPPKKKRRVGNNVHCDYLNR
PNKSIHRRRTDPMVTLSSVLESIINDMRDHPNTYPFHTPVNAKVVKDYYKIIPRPMNLQT
LRENVRKRVYPSREEFRENVELIVKNSATYNGAKHPITQVAQTMLDLCDEKLKEKEDRLV
RLEKAINPLLDDDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVQPMD
LENVRKNISKHKYQNRDVFLFDVSLVHTNSVKYNGPDSPYTNTALEIVNVCKQTLAEYDE
HLTQLEKDISTAKEAALDAADLDSLDPMTPGTYTPQPADVFDSSASVSLHRETSFFSEVE
ASLMAVPEKRGVGQGRHRRLGEEESDVDIEGFEEEDDGKPKTPAPAEDGEGDLEDEEDEE
DMLLPPHRRLRGHEDDDYDEDEGSSRPAQASVLYQDLLMSDGEDDASEEEGDNPFSSIHL
SESGSDSDREVEVRPPPPPRPHHETARMGLEQDESMMSYGEEVPDETHLEDSNVSYGSYE
EPEGQTQTQTSSMGNGEDYGMSEEEEEEAAQRRGPSVLSQVQLSEDEEDSEEFRSIGGES
DLDSDN
NT seq
5961 nt
NT seq
+upstream
nt +downstream
nt
atgtcggactcagacagtgatgaagaccaagaccgccccttctctctcactggtttcctc
ttcgggaacatcaatgaagatggtcagctggagggagacagtgtgttggacactgagtcc
aagaaacacctggctggcctgggctccctgggcctgggaaacctcatcacagagatcact
gccagtgaggaggacgatcctgacgaggatggagacacaggtggcacagacgcagagggc
tgggtgaagaatgatgccgatgcagttgattattctgacatcaatgaggtggctgaagat
gagactaagaagtatcgtcaggccatgggcagcctgcagcctaccaggagaacagatgat
gaggatgaggatgactatgatgcggattgtgaggatattgatgccaagcttatgccccct
ccacctcctccaagtctcaccacgcctggtggcaagaaagaggattcctctcctacggct
gcaagtgttggggatgaaggagacgggatcatcctgccctccatcattgctccctcctct
ctggtagacaaagtggacttcagcagctcctcagattctgagtcggagacagaccgcccc
tccacaggctccgggtctgggggtcctccagcctgcctcagcctgcccctggctggcatc
atgcagaaggatgctgccaaagccctgcctggcgtcacacagctcttcccagagttcagg
cctggaagggtgctgcggttccttcgactgtttggccctgggaagaacatgccgtcggtg
tggcggagtgcacgaagaaagaggaagaggaagcaccgcgacccccagccagagacaccc
ccatcagagggcgctgagcccatggagcagcagggaccagagaagatatctggctgggac
tatgagtacgccccacctccacccccagagcagtgcctgtctgatgacgagatcaccatg
atggccccagtagagtccaagttctcccagacctctggagacggggacaaggtggcagag
tccaggcccaaggtggcagagtggcgctacggtccggcccagctctggtacgacatgatg
ggggtccctgaggatggcagtggcttccactacggcttcaaactgaaggaggaggaggaa
gatgagcaggagaagcaggagaggccagaaccaccaccaccaccagttccacaacctccc
aaagaggagggcagtggtgacgaaaaggacgaacaggccctggagaacgagctctttctg
atggtcacccagcttcagtgggaggacgacatcatctggaacggagaggacgtgaaacac
aaaggcactaagacccagcgagccagtctggcagggtggctgccttccagcatgacgcgc
aatgccaatgcctacaacgcacagcagggtctgtgtaggagtaactctcagctggtgccc
cccactcctccacccatgcccaaagccccctccatcggctctggctccaagagggacaaa
caccaccatgaccattatgcctctcatgaagatgacgccccctggttctccatcttcccc
attgacaatgaggagctggtgtacgggcgctgggaggacaacataatctgggacgaccag
gccatggaccgcatgctctcgccccctgtcctcaccctggaccccaacgatgagaacatc
attttagaaatcccagatgagaaggagtctgagcatacgtcccactccccgtccaaggag
aacaagaaggagtcggcactgaagaagagtcgcatcctgctggggaagactggggtcata
aaggaggagcctcaacagaacatgtcccagcccgaggtgaaggacccatggaacctgtcc
aatgatgagttctattaccccaagcagcagggcctgaggggcaccttcggtggcaacatc
attcagcactccatctctgcagtggagctgaggcagccgttcttccctactcacatggga
cccatgaagctgcgtggcttccaccggccctctctgaagaagtactcgtttgggacgttg
tcccagccaggtccccatgcagcacagccccttctcaaacagatcaagaagaaggccaag
atgagagagcaggagcgccaggcttccggtggcggtgacatgttcttcatgcggacagct
caggatctgacggggaaagacggagacctgattctggcagagtacagcgaggaataccct
ccgctcatcatgcaagtcggcatggcaaccaagatcaagaactactacaagagaaaacca
gggaaggaccctggagctccagactgcaagtacggagagaccgtgtactgccacacctca
cccttcctgggctccctgcaccctgggcagctgctgccggcttttgagaacaaccttttc
cgcgcccccatatacctccacaagatgccagagacagatttcctggtgctgcgtacgcgg
cagggctacttcatcagagagctggtggacatatttgtggttggacagcagtgtccgctc
tatgaggtccctggacccaactccaaacgagcgaacacccatatcagagacttcctgcag
gtgtttatctatcggttgttctggaagagtaaagatcgtcctaggagaatccgcatggag
gacataaagaaagctttcccctcacattcagaaagcagcatccgcaaacgcctaaaactc
tgtgctgacttcaagcgtacagggatggactctaactggtgggtgctgaagcctgacttc
aggctgcctactgaggaggagatcagggccatggtgtctccagagcagtgctgtgcctac
tacagcatgctggtggcagaacagagactgaaggatgctggatatggtgaaaagtcattc
tttgccccagaggaagagaacgaggaagacttccagatgaagattgatgatgaggtccgc
acagccccttggaacacaacgcgagccttcatcgctgccatgaaggggaagtgtctgctg
gaggtcatgggggtggccgaccccacaggttgtggagagggattctcctatgtcaaagtg
cccaacaagcccactcaacaaaaggcccaggatgaccgggagccacaacccgctaagaag
actgtgacagggacagacgctgatctgagaagactatcactgaaaaacgccaagcagctg
ctgcgcaagtttggtgttccagaggaggagataaagaagctgtctcgttgggaggtgatt
gacgtggtgaggacaatgtctacagagcaggcgcgctctggcgaggggcccatgagcaag
tttgcccgtgggtcccgcttttctgtagccgaacaccaggagcgctacaaggaggagtgc
cagaggatctttgacttgcagaacaaagtattggagtccacagaggtcctgtccacagac
acagacagcagctcagcggaggacagtgactttgaggagatggggaagaacattgagaac
atgctgcagaacaagaagaccagctcccagctgtccagagagagggaggagcaggagagg
aaagagctgcagaggatgctgatgggagaggagagcgaccgcgaccacaagggacgcaaa
gcacgcaagggcttctccagtgctttatccacgggctcccataaagatgacgacacgtcc
tcggtcaccagcctgaactcgtccgctacgggacggcgcctcaaaatctaccgcaccttc
agagacgaggacggcaaggagtatgtccgctgtgagacagtccgcaaaccctccgtcatt
gacgcctacaccagaatcagaaccaccaaggatgacgagttcataaagaagtttgcgctg
tttgacgagcaacatagagaggagatgaggaaggagcggaggaggatccaggagcagctg
aggaggctgaagaggaatcaggagaaggacaggttcaagagccccccagagaagaaagcc
aagaagatcaaggagaggccagacctcaaggtaaaactgaagtgcggcgcttgcggtgcc
atcgggcacatgcgaaccaacaagttctgcccgctgtactaccagaccaacgctccgccc
tccaacccggttgccatgacggaggagcaggaggaggagctggagaagactgtcatccac
aatgacaacgaggaactcatcaaggtggagggaaccaagatcgtcctgggcaagcagctc
atcgagagtgctgatgaggtgcgcaggaagtccctggtgctgaaattccccaaacagcag
cttccccccaagaagaagagacgtgttgggaacaacgtacactgtgactacctcaatagg
cccaacaaatccatccaccgcagacgcactgaccccatggtcaccctgtcctcagtcctg
gagagcatcatcaatgacatgcgtgatcaccccaatacataccccttccacacaccagtc
aatgccaaggtggtgaaggactactataagatcatccctcgtcccatgaatctgcagaca
ctacgggagaatgtgcgcaagcgtgtgtacccctcccgggaggagtttagagagaatgtg
gagctcattgtcaagaacagtgccacatacaacggtgccaagcatccaataacccaggtg
gctcagactatgctggacctttgtgatgagaaactgaaagagaaggaagacaggctggtg
agactggagaaagccatcaaccccctactggacgatgacgaccaggtggccttctccttc
atcctggacaacatcgtcactcagaagatgatggccgtgcctgactcttggccgttccac
catccagtcaacaaaaagtttgttccagattactacaaagtgatagtccaacccatggac
ctagagaatgtccgcaagaacatatccaaacacaagtaccagaaccgggatgtgttccta
tttgacgtcagcctggtccacaccaacagtgtcaagtacaacggtccagacagcccttac
accaatacggccctggagatagtcaacgtgtgcaagcagaccctggcagagtatgatgag
cacctgacccagctggagaaggacatctccacagctaaagaggctgctctggatgcagca
gacctggatagcctggaccccatgactcctggaacctacacaccacagcctgctgatgtg
tttgacagcagtgcctctgtgagcctgcacagagagaccagctttttctctgaggttgag
gcatctctaatggctgtaccagagaagaggggggtagggcagggtcgtcatagaaggcta
ggagaggaggagtcggacgtggacatcgagggcttcgaggaggaggatgacggcaagccc
aagacaccagctcctgcagaggatggtgagggagacctggaggatgaagaggatgaagag
gatatgctgctaccgccccacagaaggctgcggggccatgaggatgatgattatgacgag
gatgaaggctccagtcggcctgcccaggccagcgtgctgtaccaggacctgctcatgtca
gatggagaggatgacgccagcgaagaggagggagacaacccgttctcctctatccacctg
tcagagagtggcagtgactcagacagagaggtggaggtgcgtcccccgccccctcccaga
ccccaccatgagacggcccgcatgggcctggagcaggacgagagcatgatgtcatacggg
gaagaggtgccggatgagacccacctggaggacagtaatgtcagttatgggagctatgag
gagccggagggtcagacccagacccagacctccagcatgggcaatggagaggactacggc
atgagtgaggaagaggaggaagaggcggctcagaggagaggtcccagtgtgctgtcccag
gtgcagctgagtgaggatgaggaggacagcgaagagtttaggtccatcgggggagagagt
gacttggactcagacaactag
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integrated database retrieval system
