Coregonus clupeaformis (lake whitefish): 121575488
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Entry
121575488 CDS
T08357
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM8-like
KO
K12001
tripartite motif-containing protein 8 [EC:
2.3.2.27
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
121575488
Enzymes [BR:
cclu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121575488
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
121575488
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_4
zf-C3HC4
zf-C3HC4_2
zf-RING_2
TRIM_CC
DUF3287
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
121575488
NCBI-ProteinID:
XP_041744543
LinkDB
All DBs
Position
1:complement(84190731..84198395)
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AA seq
583 aa
AA seq
DB search
MASNMATSDLSETWRNCFEEELICPICLHVFSEPIQLPCKHNFCRGCISEAWAKDTTLVR
CPECNHAYSQKPALEKNHKLSNIVDKFNALSVEKAASPVLQCILCRRGPPLPAVKVCLRC
SAPCCQSHVQTHLQQPCSALGHLLVEAEAVKAWTCPQHDEYRLYHCEAEQTAVCQYCCFT
RCHPSHGHGVTDVELRRNDIRQNLLRQQERVEERVQDIDEQLCKLDSDKCVVEDRVCELK
EEVRVQYQRMQHFLEEDLSRTLEVLERARSRFCQENAGQVLALGEQRHEAQKLLSSVHTA
FGKAEELGFMKNTKPVKILMERSQACVGSALPPYKVGSLNSKLFLSELSKREKSLRKTLE
APLAPPSSFLQSVQAYPSGLGSGAEKRKHSSAFPESNGSAGKTASSGFNDSSSSSKQPYL
GPNSAPGEGQSSNQQLLGPCGPSHMNEGGGTGSGSGSLTNHHSGSVFSPSHFPPASGSSS
HSSQPAVLPQYGGRKILVCTMDNCYCSGVPSVSGHRGHPPYPRSGSFPWVSAQDYPPPPG
LASGAPAMQGLAVRDWIDAQQTHRHTDFYGLYGQPSTKHYVTS
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atggcctcaaacatggcgacctccgacctgtccgagacatggaggaactgtttcgaagag
gagctgatctgccccatctgcctgcacgtcttctccgagcctatccagctgccctgtaag
cacaacttctgccggggctgcatctctgaggcctgggctaaagacaccaccctggtccgc
tgccccgagtgcaaccacgcctacagccagaagcctgctctggagaagaaccacaagctg
tccaacatcgtggacaagttcaacgcgttgtccgtagagaaggccgcctcgccggtgctg
cagtgtattctgtgccgccgtggcccgccactcccggctgtcaaggtttgcctgcgctgt
agcgccccctgttgccagagccacgtccagacacacctgcagcagccctgctccgccctg
ggacatctgctggtggaggctgaggcggtcaaggcctggacgtgtcctcagcacgacgag
tacagactgtaccactgtgaggcagaacagacggccgtgtgtcaatactgctgcttcacg
cgatgccatcccagtcacggacacggggtcactgacgtggagctacgacgcaacgatata
cggcaaaatctattgcggcagcaggagagggtggaggagagagttcaggacattgatgag
cagctctgtaaactcgactctgacaagtgtgtggtggaggacagagtgtgtgagctgaaa
gaggaggtgcgtgtgcagtaccagcggatgcagcacttcttggaagaagatctgtcccga
acgctggaggttctagagcgggcgcgttctaggttctgccaggagaacgcaggccaggtt
ctagctctgggagaacagagacacgaggcccagaagctgctcagctcggtccacacggcc
ttcggcaaggctgaggagctgggcttcatgaagaataccaaacctgtcaagatcctcatg
gagaggtctcaagcgtgcgtgggcagtgcgctccctccctacaaggtgggcagtctcaac
tctaagctgttcctgtcagaactctccaagcgagagaagagcctacggaaaacattggaa
gcccccctagcacctccctcctcgttcctccagtccgtccaggcatatcccagcggcctc
ggctccggggcagagaaacgcaaacactcctcggccttcccagaaagcaacggaagcgct
gggaaaacggcttcttccgggttcaatgactcctcttcctcttctaagcagccctacctg
ggcccaaactctgcccccggggagggccaatcctccaatcagcagcttctgggtccctgt
ggcccctcccacatgaacgaaggtggcggaacaggaagtggaagtggctctctaaccaat
caccattcagggtctgtgttcagtccctcccacttcccccctgccagcggtagctcctcc
cattcttctcagccggcagtgctcccccagtatggcgggcgtaagatcctggtgtgtacc
atggataactgctattgctccggggtaccctcagtgtcggggcaccgcggccaccctccc
tacccacgttcaggctcctttccctgggtaagcgcccaggactacccccctccccccggc
ctggcctctggagctccagccatgcaaggattggctgtcagagactggatagacgcacag
cagacgcacagacacacagacttctatggcctgtatgggcaaccctccaccaagcactat
gtcaccagttaa
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