Coregonus clupeaformis (lake whitefish): 121576703
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Entry
121576703 CDS
T08357
Symbol
vps4a
Name
(RefSeq) vacuolar protein sorting-associated protein 4A
KO
K12196
vacuolar protein-sorting-associated protein 4
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03250
Viral life cycle - HIV-1
cclu03272
Virion - Hepatitis viruses
cclu04144
Endocytosis
cclu04217
Necroptosis
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
121576703 (vps4a)
03272 Virion - Hepatitis viruses
121576703 (vps4a)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
121576703 (vps4a)
09143 Cell growth and death
04217 Necroptosis
121576703 (vps4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121576703 (vps4a)
03400 DNA repair and recombination proteins [BR:
cclu03400
]
121576703 (vps4a)
Membrane trafficking [BR:
cclu04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT-III complex
121576703 (vps4a)
DNA repair and recombination proteins [BR:
cclu03400
]
Eukaryotic type
Check point factors
Other check point factors
121576703 (vps4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
Vps4_C
MIT
AAA_lid_3
AAA_16
TIP49
AAA_22
AAA_14
AAA_25
AAA_5
IstB_IS21
RuvB_N
DUF815
AAA_2
AAA_18
AAA_17
RNA_helicase
AAA_33
nSTAND3
NPHP3_N
PhoH
AAA_24
AAA_28
ResIII
Mg_chelatase
AAA_7
Parvo_NS1
NACHT
bpMoxR
YhdB
Viral_helicase1
TPR_1
TPR_IF140_C
TPR_2
Motif
Other DBs
NCBI-GeneID:
121576703
NCBI-ProteinID:
XP_041746006
LinkDB
All DBs
Position
29:complement(58072115..58080818)
Genome browser
AA seq
436 aa
AA seq
DB search
MTTSTLQKAIDLVTKATEEDKNKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRGKC
MQYLDRAEKLKDFLKNKEKAGKKPVKEAQSNDKSDSDSEGENPERKKLQEQLMGAIVMEK
PNVRWNDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVA
TEANNSTFFSVSSSDLMSKWLGESEKLVKNLFDLARQHKPSIIFIDEVDSLCGSRNENES
EAARRIKTEFLVQMQGVGNNNDGILTLGATNIPWVLDAAIRRRFEKRIYIPLPEEPARSQ
MFRLHLGNTPHSLSDADLRQLAKKTEGYSGADISVIVRDALMQPVRKVQSATHFKKVRGP
SRANSQLMVDDLLTPCSPGDPAAIELTWMDVPSDKLLEPIVCMSDMLRSLSTTRPTVNTE
DLFKVRKFTEDFGQEG
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgacaacgtcaacattacagaaagcgattgatcttgtgaccaaagccacagaggaggac
aagaacaagaactatgaggaggccttgcgcctttaccagcatgcagtggagtacttcctg
catgctatcaagtatgaggcccacagtgacaaggcaaaggagagcatacgtggaaagtgt
atgcagtacctagaccgggccgagaaactcaaagatttcttgaaaaacaaagaaaaagca
gggaagaagcctgtcaaggaagcacagagtaatgataagagtgacagtgacagtgagggt
gaaaacccagagagaaagaaactgcaggagcaactgatgggtgccattgtaatggaaaag
cccaatgtccggtggaacgatgtagctggactggagggagctaaggaggccctgaaggaa
gctgtaatcctgccaattaaattccctcacctcttcacaggcaaacgcactccatggaga
gggattcttctctttggaccacctgggacaggaaagtcttacctggccaaagcagtagcc
acagaagccaacaactccaccttcttctctgtgtcatcatcagacctcatgtccaagtgg
cttggagagagtgagaaactggtgaagaacctgtttgatcttgcccgccagcacaagccc
tccatcatctttattgacgaggtggactcgctctgtggctccaggaatgagaatgagagt
gaggcagcccggcggattaagaccgagttcctggtacagatgcaaggtgtgggcaacaac
aacgatggaatcctcacccttggggccactaacattccctgggttctggatgctgccatc
cggagaaggtttgagaagcgtatctacatccctctcccagaggagcccgccaggtcccag
atgttccggctgcacctgggcaacacaccccacagcctgagtgacgcagacctgcgtcag
cttgccaaaaagacagaaggctactccggggctgacatcagcgtcatcgtacgagatgcc
ctcatgcagcctgtcaggaaagtgcagtcagccacacacttcaaaaaggtgcgagggcca
tcccgtgccaacagtcaattgatggtggatgaccttctgaccccgtgttcacctggggac
ccagctgccatagaattaacctggatggatgtgcctagcgacaagctgctggagcccatc
gtctgcatgtctgacatgctgcggtccctgtccaccacgcgtcccacagtcaacactgag
gacttgttcaaggtcaggaagttcacagaggactttggacaggagggctga
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