Coregonus clupeaformis (lake whitefish): 121576930
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Entry
121576930 CDS
T08357
Name
(RefSeq) cyclic nucleotide-gated cation channel beta-1-like
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
121576930
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121576930
Ion channels [BR:
cclu04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
121576930
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
121576930
NCBI-ProteinID:
XP_041746468
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All DBs
Position
11:complement(7194704..7233700)
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AA seq
1343 aa
AA seq
DB search
MFNWVVKVVPQPPDAPGSLGQETANPVPAAPQKVSKDEVRKEVNAKPAKQKEEDNSEDNG
IQSQSGVMTWLSNGFTSALPQPTGTPNLSRSNSVSRSLQEVQREDERNGVIKWIAEGLSK
VVPQPDDKYREDIREEEEEVTETHEEYIAEPCVYNMKDVPDAEPLPHIPVVEIFSDDEEE
DRVPQFPHKVVNWIKNAIPQPVMLPAGYVEAQCKAQQAQSKRSSLDKVLSPPPESLKGDE
DSQNSNVVGWFVMGLGLKMPQHVARSRDDVEVLQNVSKQPKAVDLVLEEVVEADLKDLNQ
EVPSKAVQSEPPQPFKPTQTTQPTQTTQSQPAQPKQPVKPEEPEQTLPNVPESTTASLED
AETQTGRWTPFIESIKREAEGIVMANMEERMTQERVDLVRMAEEVARHTAEMTIRQMQEA
QSIKLSIHSQEAILEEDEDPELHMLREEESEVEHTKNKMTECQVCPAKEEPVEAAKSAPQ
SERDFASPDDEPEPQEELESKSASPSPPPSPEPDPVKTAEPEPKLKAQDAKVAPEPVTQQ
PQKAKGAEDRTKPDTTTKEEGETAEEGGCGASSRLSVHPAVNVEDVDSGGGGHHRHIPQI
LTPQDPNLKTLTVPRVSKASRQSKVSDKEKNLHSQSEDDEEETETAVRAWPSQSSILSGD
DGLKERPASSASQTSYMVNERLQKLVKMFKERTERAKEKLIDPDHSDDDSPTASPARSPT
PTPAPPEEPEEEAQPASPEREDEEQQQQPQSRLWCKVTPPRWIRALLHYRFPASIDPFTN
LVYVLWLFIVTLAWNWNVWLIPMRWAFPYQTPSNIYRWLLADYLCDLIYILDILVFQPRL
QFVRGGDIVFDKKDMRKNYMKTFRFKMDVISLVPLELFYFKTGINPLLRFPRLLKIMSFF
EFNDRLEAILTKAYVYRVIRTTTYLLYCLHCNACLFYWISAYEGLGSTKWVYDGKGNSYI
RCYYFAVKTLITIGGLPEPTKLFEIIFQLINYFVGVFAFSIMIGQMRDVVGAATSGQAYY
RACMDNTVKYMASYHIPKDVQNRVKTWYNYTWQSQGMLDEQELLVQLPDKMRLDIAVDVN
YDIVSKVSLFQGCDRQMIFDMLKSLRSVVYLPGDYVCKKGEVGREMYIIKAGEVQVVGGP
DGKTVFVTLRSGSVFGEISLLAVGGGNRRTANVVAHGFANMFILDKKDLNEILVHYPESQ
KLLRKKARKMLTKDKKPEPPKEPAQVIPPRTETPKLLVAVLEMAHQKTGLKRTLAKIKEN
TNKSSVSLQPSMSSSLTPLSPVSPVSSLDPEHKTGTMSPTSDSSTSLCPASHCHRDETLS
KEQDNVEEEEAGESGKRKEKRKP
NT seq
4032 nt
NT seq
+upstream
nt +downstream
nt
atgtttaactgggtggtgaaagtggttcctcagccccctgacgcccctggctctctggga
caggagacagccaatcccgtacctgcagcaccacaaaaagtgtctaaagatgaagtcaga
aaagaagtcaatgcaaaaccagccaaacagaaggaagaggataattcagaggacaacggt
attcagagtcagagtggagtgatgacctggctctccaatggctttactagtgctctgcct
caaccaacaggcacccctaacctcagcagatctaactctgtatccaggtcactgcaggag
gtacaaagagaggacgaaaggaatggggtgataaagtggattgcagagggactgagcaaa
gtggtgccccagccggatgacaagtacagagaggatattcgagaggaggaggaggaggtg
acagagacgcatgaagagtatatcgcagagccatgtgtttataacatgaaagatgtgcca
gacgcagagcccctgccacatatacctgtggtggagatattttcagacgacgaggaagag
gatcgggtaccacagttcccccacaaagtggttaactggattaagaacgctattcctcag
cctgtgatgctccctgcaggttacgtagaggcccagtgtaaggcccaacaggcccaaagc
aagaggtcatctcttgacaaagttttgtcgccacctcctgagtctctcaaaggtgacgag
gactcacaaaactcgaatgtcgtgggctggtttgtgatgggcctcggcctcaagatgcca
cagcatgttgcgagatcaagagatgatgttgaagttctgcagaatgtctctaaacaaccc
aaagcagtggacctggttctggaggaagtagtggaagcagacttgaaggatctgaatcag
gaggtgccatccaaggctgtgcagtcagaaccaccacagccttttaagcccacgcagacg
acacagccaacacagacgactcagtcacagccggcacagccaaaacaaccagtgaaacca
gaagagcctgaacagactcttccaaatgtgccagagtctacaacagcgtcgctggaggat
gctgagactcagacgggcaggtggacaccattcatagagagcatcaagagagaggctgag
ggcatagttatggctaacatggaggaacggatgacccaggagcgcgtggatttggtgcga
atggcggaggaggtggccagacacacagctgagatgaccatcaggcagatgcaagaggcc
caatcaatcaagctttccattcacagccaggaagccattctggaggaagatgaggaccca
gagttacacatgctacgggaggaggagagtgaggtggagcacactaagaataagatgaca
gagtgccaggtgtgtcctgctaaggaggagccagtggaggctgcaaagagtgcccctcag
tcagagcgcgactttgcttcacccgacgatgaaccagagccccaggaggagctagagtcc
aagagcgcctctccatctcctcctcccagcccagaaccagatccagtcaagacagcagag
cctgaacctaaactaaaggcccaggacgccaaagtagcacctgaaccggtgacccaacaa
ccacagaaagcaaagggggcagaggacagaaccaaacctgacaccactaccaaggaggag
ggggagactgcagaggagggtggctgtggtgcgagctccaggctcagtgtgcaccctgct
gtcaatgtggaggacgtggattcaggcggaggggggcaccatcgacacattccccaaatc
ctcaccccccaggaccccaacctcaagaccctgaccgtacccagagtatccaaagccagc
cgccagagcaaagtttctgataaagaaaagaacctgcactctcagagtgaggatgatgaa
gaggagactgagaccgcagtgagggcgtggcctagccagtccagcatcctcagtggagac
gatgggctaaaggagcgccctgcgtcgtccgctagccagaccagctacatggtgaatgag
cgcctacagaaactggtcaagatgtttaaggagaggacagagagggccaaagagaaactc
atagacccagatcactctgatgatgacagtcccactgcctcccctgcgagatctccaaca
ccaactcctgcgcctccagaggagccggaggaggaagcacaaccagcctcccctgagagg
gaggacgaggagcagcaacagcaaccccagtctagactgtggtgcaaggtgacacctcct
cgctggatcagagccctgctgcactaccgcttccccgctagcatcgaccccttcaccaat
ctggtctatgtgctgtggctatttatcgtcaccttggcgtggaactggaacgtgtggctg
atcccgatgcgctgggccttcccctaccagacccctagtaacatctaccggtggctgctc
gctgactacctgtgtgacctcatctacatcctggacatcctggtcttccagccccgcctg
cagtttgtccgcggtggagacatagtgtttgacaaaaaagacatgcgaaagaattacatg
aaaaccttccggttcaagatggatgtcatcagtcttgtgccactggagttgttctatttt
aaaactggaatcaacccactcctccgcttcccacggctactaaagataatgtctttcttc
gagttcaacgaccgtcttgaggccatcctgaccaaagcctatgtttacagagtgatccgg
accaccacctacctgctgtactgcctccactgtaatgcctgtctgttctactggatctct
gcgtatgaaggtctgggctccacgaagtgggtctatgatggaaagggcaacagttacatc
cgctgctactactttgctgtgaagactctgatcaccattggtggactgccggaacccaca
aagctctttgaaatcatctttcagctcatcaactactttgtaggagtgtttgccttttcc
atcatgattggacagatgagagatgtggttggtgcagccacttcaggacaggcatactac
agagcatgcatggacaacactgtcaaatacatggcctcctaccatattcccaaagacgtg
cagaaccgggtcaaaacctggtacaactacacctggcagtcccagggcatgctggatgaa
caggagcttctggtccagctcccagacaagatgaggctggacatcgctgtggatgtcaat
tatgacatcgtcagtaaagtctctctcttccagggttgtgatagacagatgatctttgac
atgttgaagagtctgaggtctgttgtttacctcccaggggactatgtctgcaaaaagggc
gaggttggacgggagatgtacatcatcaaggccggggaggtgcaggtggtgggcgggcca
gacgggaagactgtgtttgtcacgctgaggtcggggtcagtgtttggggaaatcagcttg
cttgcagtgggtggaggaaacaggagaacagcgaacgtggtggctcatggcttcgccaac
atgttcatcctggacaagaaggacctcaatgagattctagtgcattaccccgagtctcag
aagctgctccgcaagaaggccaggaagatgctgacaaaagacaagaagccggagcctccg
aaggagccagcccaggtgatccctcctcggacagagacacccaagctactcgttgctgtt
ctggagatggctcatcagaaaacaggcctcaaaaggaccctcgccaagataaaggagaac
accaacaaatccagcgtttctctacagccctcaatgtcctcctccctgactcccctgtcc
ccagtctctcctgtctccagtctggacccagagcacaagactggcaccatgtccccaacc
tcagacagctccacgtcgctctgccccgcctcccattgtcacagagatgagacgctgtcc
aaggagcaggacaacgtggaggaagaagaggcaggagagagtgggaagaggaaagaaaag
cgaaagccatga
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