Coregonus clupeaformis (lake whitefish): 121577721
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Entry
121577721 CDS
T08357
Name
(RefSeq) rho guanine nucleotide exchange factor 10-like protein
KO
K16727
Rho guanine nucleotide exchange factor 10
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121577721
03036 Chromosome and associated proteins [BR:
cclu03036
]
121577721
Membrane trafficking [BR:
cclu04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
121577721
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
121577721
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_2
PH_19
RhoGEF
Beta-prop_LRRK2
Beta-prop_RSE1_2nd
IQ_SEC7_PH
SOS1_NGEF_PH
WD40_CDC20-Fz
CFAP43_N
DUF7675
RHG20_PH
Motif
Other DBs
NCBI-GeneID:
121577721
NCBI-ProteinID:
XP_045079637
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All DBs
Position
12:complement(11934348..12093041)
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AA seq
1306 aa
AA seq
DB search
MSSVMPQQQQREEGEEEDEEQGEKFEFDDSADEEKEPADTKDPISDSVKASQKSNQSFKE
ATNQPQDNTLTPPGHSQQHLNAMPRAGQEDNPSQGQYSTASPDVPVSDPPRRVSSPVELV
EPNAAEPSLGEQAQGGSGPGEALPVEKQTDSEDHSVETAKESSSLREHSEEGVADAEADA
EPLTGILRVIYDDVPCEGPLSPDEGDMIYEDVHREEVPQGAGNDWSSGEFESYEEQSDTE
SKLPTRSKQYSPDIHRLRDRCARTKREIVMRLGGKNNYDTKVHQLMKAARSGTKDGLDKT
KIAFMRKVSFLHKKDHSEDVEDDAGYLDVAVSDVKHPPAQLSPMPEGLSSQQVVRRHILG
SIIQSERSYLESLRRILEEYQRPLLEADPRILSPRKIRPVFYRLREITQCHSMFQIALAS
RVAEWDSSEKIGDLFVASFSKSMVLDVYSDYVNNFTNAMALIKKACMSKPAFLEFLKKKQ
ASSVDRITLYGLMVKPIQRFPQFILLLQDMLKNTPKGHVDCLPLQLALTELEMLAEKLNE
QKRVADQIAETQQLARSVSDHSLSKQLNSDQGSLVLCETLIETVYGERGQVLKSKERKVF
LFNDILICANINVKGPPDISSLVPVGPKYTMKWSAPLLQVQVVEVGQEASQAKETMFQHS
AAKHPGSACLPGKVILGPPMLYQELQDLQYDLSVVEEVTLLVGTLQGTYQNLNTTVAQDW
CLALQRLIRIKEDQLQNANKCRLRLQVPGRPDKSGRPVSFMVVFNTPSPLSKISWVNRLH
LAKIAQREENTPGWFCAEDEGKTMAPFWPLLSCRVPVFTTKSSDRKLEAAVHNPVQCALL
GFSAVSTLLPQGYLWVASGGDVTQGQVEIFSLNRPTLRPVKSLQVGAPVRCLEYVPEPSP
SEEVEAVTFRSPTGVGNTICLGLDDGSILVYSSVDTAAQCLLNLRNPHSCPVLCLKHSTN
FLFAGLRDGTMMVYGRSNGGELWEPDSCRTVIVGPEPVRTLLVLEDSVWASCANSVTVIE
GSSLATQRFEVHPDPMVSVAHMVRAGGGVWMAFSEGSSIRLFHTETLEHLQEINISTRVS
LHNPGQKSMRVTSLLICQGLLWVGTVQGVIITLPVPKLEGIPKITGKGMTSLNAHCGPVD
FLVATSSTLSPELLKMDSVADGLDSACGGEDRSDSASQESLPQSGSSQGEGGGKGRGVLL
QYRLRSTSGLPGRPLTARGDKASDSSLESLEHSLEDGSIYEFSDDPEMWVRGRPCERDRG
RRDRVTLAAVISGGRGFHRLREGTAERAGVESSETTLMVWQLPLTV
NT seq
3921 nt
NT seq
+upstream
nt +downstream
nt
atgtcctctgtgatgcctcagcagcaacagagggaggaaggggaggaggaagatgaagag
caaggggagaagtttgagtttgacgacagtgctgatgaagagaaagagccagcggatact
aaagaccctatctcagactctgtaaaagccagtcaaaaatcaaaccagtcatttaaggag
gctacaaaccaaccacaggacaacacactaacaccccctggacactcacaacagcacctc
aatgcaatgccccgtgctggtcaggaggacaacccctcccagggacaatactccacagcc
tctccagatgttccagttagcgacccacccaggcgggtctctagccccgtcgagctggtt
gagcccaatgccgcagaaccctccttgggagagcaggcccagggaggttctggtcctgga
gaggcgttacctgtggagaagcagactgactcggaggaccatagtgtggagacggccaag
gagagctccagcctgagggaacactctgaagaaggtgtggctgatgctgaggctgatgca
gagcccctgacagggatcctaagggtgatctatgatgacgtgccctgtgagggaccactc
tctcctgacgaaggggacatgatctatgaggatgtgcacagagaagaagtgccacagggt
gcaggcaacgattggagctccggtgagtttgagagttacgaagagcagtcggacaccgag
agcaaactaccaacccgcagcaagcagtactctcctgacatacatcgactgagggaccgt
tgtgccaggaccaaacgtgaaatagtcatgaggctgggtggcaaaaacaactatgacacc
aaggttcatcagctaatgaaggccgccaggagtgggaccaaggatggactggacaagacc
aaaatagcctttatgcggaaagtctccttcctgcacaagaaggaccactcagaggatgtg
gaggatgatgcagggtacctggatgtggctgtgtcagatgtgaaacatcctcctgcacag
ctgagccctatgcctgagggactgagcagccagcaggtggtcagacgccacatcctgggc
tccatcattcagagtgagcgcagttatcttgagtccctcaggagaatccttgaggagtac
cagaggcccttgctggaggcagacccacgcatcctgagcccacggaagatccggcctgta
ttttaccgtctacgggagatcactcagtgtcactccatgttccagattgcactggcgtca
cgtgtggctgagtgggacagcagtgagaagattggggacctatttgtagcctcgttttcc
aagtcgatggtgctagatgtttacagcgactatgtcaataacttcaccaatgccatggcc
cttattaaaaaggcatgcatgtccaaaccagctttcctggaattcttaaagaagaagcag
gcgtccagtgttgaccggatcaccttgtacggcctcatggtgaagcccatccagcgcttt
ccccagttcatccttttactgcaggacatgctgaagaacacccctaagggtcacgtagac
tgcctgcctctgcagctggctctgactgaactggagatgctggccgagaagctgaatgaa
cagaagcgtgtggccgaccaaatagctgagactcagcagctagcccgcagtgtcagcgac
cactcgctcagcaagcaactgaactcagaccaggggtcgctggtgctttgtgagacgctg
attgagacggtgtatggggagcgaggccaggtcctgaagtctaaggagcgcaaagtcttc
ctcttcaacgatatcctcatctgtgccaacatcaacgtcaagggcccccctgatatcagc
agcctggtccctgttggtcctaagtacaccatgaagtggagtgcccccctcctgcaggtc
caggtagtggaggtgggtcaggaggcctcccaggccaaggagaccatgttccaacatagt
gctgccaagcaccctggcagtgcctgtctcccagggaaagtgatcctgggtcctccaatg
ctttaccaggaactccaggacctgcagtacgacttgtctgtggtggaggaggtcacacta
ctggtgggaacactacaggggacgtaccagaacctgaacacgactgtggcccaggactgg
tgtctagctctacagagactcatccggatcaaggaggatcagcttcagaatgccaacaag
tgccgcttacgcctgcaagtgcctgggagaccagacaagtcgggacgtcccgtcagcttc
atggtggttttcaacacccccagccccctcagcaagatctcctgggtcaaccgcctgcac
ctggccaagatcgcgcagcgagaggagaacacaccaggatggttctgtgcagaggatgaa
gggaagactatggcaccattttggcctttactctcctgccgtgtgcctgtctttacaacc
aaatcctcggacaggaagcttgaagctgctgttcacaatccggtacagtgtgctctgcta
ggcttctctgcagtgagcaccttgctacctcaaggctacctctgggtggccagtggagga
gatgtcacccaggggcaggtggagatcttctccctgaacaggcccacactgcgcccagtg
aagagcctccaggtgggggccccagtcaggtgtctggagtatgtgcctgaacccagcccc
tcagaggaggtggaggctgtgaccttcaggagccctactggggtggggaacaccatctgt
ttgggactagatgatggaagcatcctggtgtatagcagtgtggacactgcagcccagtgc
ctgttgaacctgcggaaccctcatagctgccctgtcctgtgcctcaaacactccaccaac
ttcctgttcgctgggctcagggatggaaccatgatggtctatggaaggagtaatggaggt
gagctgtgggagccagactcctgcaggactgttattgtgggcccagagccggtgcggact
cttctggtactggaggactctgtgtgggccagctgtgccaactctgtgaccgtcatcgag
ggctccagccttgccacccagaggtttgaggtgcacccagaccccatggtgagcgtggcc
catatggtgcgggctgggggaggagtctggatggcctttagtgagggctcttctattcgc
ctgttccacactgagacactggagcatctgcaggaaatcaacatctccacacgagtatct
ttgcacaacccaggccagaagagcatgcgtgtcaccagcctgctcatctgccaggggctg
ctgtgggtgggcaccgttcagggtgtcatcatcactctgcccgtgcccaaactggagggc
atccccaaaataacaggaaaagggatgacctctctgaatgcccactgtggtccggtggac
ttcctggtggccacgtccagcaccctttccccagagctgctgaagatggactctgtggcg
gatggactcgactctgcttgcggaggggaggaccgcagtgactccgcctcccaggagtct
ctgccgcagtcaggctcctcccagggggagggggggggcaaggggcggggtgtgctgcta
cagtacaggttgcgctccacgtcggggttgccagggcgaccgctaacggcccggggcgac
aaagcatctgactcctccctggagtctttggagcacagcctggaggacggctctatctat
gagttcagtgatgacccagagatgtgggtgcgggggcgcccctgtgagcgggacaggggg
cgcagggacagagtgaccttggcagcggtcatatctgggggcaggggcttccacagactg
agggaagggacagcagagcgggcgggggtggagtcttcagaaaccaccctgatggtatgg
caactaccactaacagtgtga
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