Coregonus clupeaformis (lake whitefish): 121577829 Help Entry 121577829         CDS       T08357                                  Name (RefSeq) collagen alpha-1(I) chain   KO K06236   collagen type I alpha Organism cclu  Coregonus clupeaformis (lake whitefish) Pathway cclu04510   Focal adhesion cclu04512   ECM-receptor interaction cclu04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:cclu00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     121577829  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     121577829   09142 Cell motility    04820 Cytoskeleton in muscle cells     121577829  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:cclu00536]     121577829 Glycosaminoglycan binding proteins [BR:cclu00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    121577829 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI VWC VWC2L_2nd Motif Other DBs NCBI-GeneID:  121577829 NCBI-ProteinID:  XP_041747688 LinkDB All DBs Position 1:complement(95145963..95176113) Genome browser AA seq 1455 aa AA seqDB search MFSFVDIRLALLLSATVLLARGQGEDDSGFGSCSLDGQQYNDKDVWKPEPCQICVCDSGT VMCDEVICEDTTDCADPIIPDGECCPICPDDSEEGPTVVPKGPQGEVGPKGDDGPEGVPG NDGMDGQPGLPGPPGPPGPPGLGGGNFSPQMHHGYDEKSSGGQAQQGPMGPMGPRGLPGP PGNTGPPGHHGPPGEPGEPGSAGPMGQRGTMGPPGKNGDNGEPGRSGRPGERGSAGPQGA RGTPGTPGLPGIKGHRGFNGMDGAKGDGGPAGPKGEGGAPGSNGNPGAMGARGLPGERGR PGPAGPSGARGNDGNSGPAGSPGPTGPSGPPGFPGGAGAKGETGPQGGRGSDGPQGSRGE PGNPGPAGAAGPSGAPGSDGQPGGKGATGAVGISGAPGFPGSRGPAGPPGAGGGPGPKGN HGEHGAQGPKGEPGVKGEPGSAGPGGPPGPSGEEGKRGARGEPGGAGGVGPPGERGMPGM RGFPGSDGAAGGKGGPGERGANGPMGAQGATGEAGRPGEPGMPGSKGMTGSPGSPGPDGK VGPAGITGNDGRSGPSGPSGARGQPGVMGFPGPKGPAGDNGKPGERGEAGAVGGVGAPGK DGDSGAPGPQGPAGAQGEKGEGGPAGPNGFQGLPGTQGAAGEPGKAGDQGVPGEVGGPGP SGSRGERGFPGERGGLGPAGPAGPRGANGSPGNDGARGETGAAGAPGGMGAPGLQGMPGE RGSGGNPGAKGERGDGGPKGADGGPGKDGMRGMTGPIGPPGPPGAHGEKGEGGLGGPPGP TGGRGSPGERGEHGAPGPAGFAGPPGADGQPGNKGETGNNGPKGDAGAPGPGGPVGAPGP QGPAGNAGTKGTRGAPGSPGASGMPGPSGRVGPPGGSGAPGSPGPPGPAGKEGQKGGRGE TGHAGRPGEAGAAGPPGSSGPSGAKGNDGPMGAPGTPGPGGLAGQRGIVGGPGGRGPSGS PGVPGPAGEPGKQGPSGLVGERGSPGPMGPPGLSGAPGEAGREGSTGHDGVAGRDGPPGS KGDRGENGHAGSPGAPGPPGAPGPSGASGKTGSRGETGPAGPAGPNGPAGGRGGLGPAGA RGDKGEAGESGERGHKGHRGLSGMPGLPGPPGPPGESGPAGLNGPSGPRGPHGSSGSTGK DGMNGLPGPIGPPGPRGRNGEMGPAGAPGSPGLPGPPGPAGGGFHVAPIYNQEKGPDPMR GGGGYHYRADEPDMMNDRDMEVDTTLKSLSQKVENIRSPEGTQKNPARMCRDIRMCHPEW KSGQYWVDPNQGSPLDAVQVFCNMENGETCVYPSQDTVPMKNWYTSKNIREKKHIWFSES MDNGFQFHYGSEGSNPEDVNIQLTFMRLMSNEASQNVTYHCKNSIAYMDEATGNLKKALL LQGANEIEIRAEGNSRFTYTVSEDGCTSHTGTWGKTVIDYKTSKTSRLPIIDIAPMDVGA PDQEFGVEVGPVCFV NT seq 4368 nt NT seq  +upstreamnt  +downstreamnt atgttcagctttgtggatattcggttagcgctgttgttaagcgcaacagtgctattggcg agaggtcaaggagaggacgatagtggattcggcagctgctcgttggatggccaacagtac aacgataaggatgtgtggaaaccagaaccctgccagatctgcgtctgcgacagcggaacc gttatgtgcgatgaagtgatttgtgaggacacaaccgactgcgccgaccctatcatcccc gacggcgaatgctgtcctatctgccccgacgactcagaggagggtcccacggtggtgcct aagggaccacagggagaagttggccccaagggtgatgatggtcctgagggtgttcccggt aacgatggcatggacggccagcctggccttcccggtcccccaggcccccctggacctcct ggccttggcggcggaaacttctctcctcagatgcaccatggttatgatgagaaatccagc ggcggccaggctcaacagggaccaatgggcccaatgggtccccgtggtctccctggccca ccaggcaacactggtccgcccggtcatcatggtccccctggcgagcccggtgagcctggc agtgctggtcccatgggtcaacgtggtacaatgggccccccaggcaagaacggagataat ggtgagcctggcaggtctggtcgccccggtgagcgtggctccgctggccctcagggtgct cgtggaacccccggaactcctggcctccccggcatcaagggacatagaggtttcaatgga atggatggagccaagggagatggtggcccagccggccctaagggagagggtggtgcccct ggatccaacggtaaccccggtgctatgggtgctcgtggtcttcctggtgagagaggccgc cccggacccgctggcccttctggtgctcgtggtaatgatggtaactctggtcctgctgga tcccctggacccactggcccatctggtccccctggattccccggaggcgctggagctaag ggagagaccggtcctcagggaggccgtggctcagacggaccccaaggatctcgtggagag cccggtaaccctggacccgctggtgctgctggaccctctggtgcccccggaagtgatggc caaccaggaggaaagggtgccactggtgctgttggtatctctggtgctcctggtttccca ggatcccgtggccccgctggacctcccggagctggtggtggccccggccccaagggtaac catggtgagcacggagcccaaggccccaagggagagcccggtgtaaagggagagcctggt tccgctggtcccggtggcccccccggcccatctggggaggagggaaagagaggcgcccgt ggtgagcccggtggagctggtggtgttggaccccctggagagcgtggtatgcctggtatg cgtggtttccccggctctgatggagctgccggtggcaagggtggccctggtgagcgtgga gccaatggaccaatgggagcccaaggtgccactggtgaggctggtcgccccggggagcct ggcatgcctggatccaagggtatgactggtagccctggcagccccggccccgatgggaaa gttggccctgctggtatcactggaaacgatggtcgctccggaccctcaggcccctctgga gccagaggtcagcctggagttatgggatttcccggacccaaaggacctgctggtgacaac ggcaagcccggtgagagaggagaagccggagctgttgggggtgttggcgcccctggcaaa gatggtgactctggtgctcccggaccccaaggccctgctggagctcaaggagagaaagga gagggaggccccgctggtcctaacggattccagggtctgcctgggactcagggagctgct ggtgagcctggaaaggctggtgatcagggtgtacctggtgaggttggaggtcctggcccc agtggatccagaggtgaaagaggtttcccaggtgagcgtggtggcctcggccccgccggc cccgctggacctcgtggagccaatggttctcctggtaacgatggtgctaggggtgagact ggtgctgctggtgcccctggcggtatgggagctccaggtctgcaggggatgcccggagag cgtggctcaggtggcaaccccggtgccaagggagaaagaggtgatggtggccccaaggga gccgacggtggtccaggaaaagacggcatgcgcggtatgactggacccatcggacccccc ggaccccctggtgctcatggagagaagggtgagggtggtcttggaggcccccctggtccc actggaggtcgcggctcccctggcgagcgtggtgagcatggggcccctggacctgctgga ttcgctggaccccctggtgctgacggtcagcccggcaacaagggagagactggtaacaat ggccccaagggtgatgctggtgctcctgggcccggtggaccggttggtgctcctggacct cagggtcctgctggtaatgctggtactaaaggaactcgtggtgcccctgggtcccctggt gcttctggtatgcctggtcctagtggaagagttggccctcctggtggaagtggtgccccc ggatccccaggcccccccggccccgctggtaaagagggacagaagggtggacgtggtgaa actggtcacgctggtcgccctggtgaggctggagccgccggacctccaggatcctcagga ccatctggagctaagggtaacgatggcccaatgggagccccaggaacccccggacccgga ggtcttgctggacagcgtggtattgtagggggcccaggaggaaggggacccagcggtagc ccaggagtaccaggaccagctggggagcccggtaagcagggacctagcggcctcgtcggt gagcgtggatcccctggccccatgggaccccctggattgtctggtgcacccggtgaagct ggtcgtgagggttccactggtcacgatggtgttgccggtcgcgatggacccccaggctcc aagggtgaccgtggtgagaatggtcatgccggttcccctggtgctcccggacctcccggt gcccccggtccctctggtgcttctggcaagactggtagccgcggagagactggtcctgct ggtcccgctggccctaacggtcctgctggtggtcgaggtggtcttggccctgctggtgct cgtggagacaagggagaggctggagagagtggagagagaggccacaagggacacagaggt ttgagcggcatgcccggtcttcctggaccccctggaccccctggagagtctgggcctgct ggacttaacggaccttctggaccccgaggaccccacggttcttctggttccactggtaag gatggcatgaacggtctgcctggacccatcggaccccccggaccccgtggtcgcaacgga gagatgggacctgctggtgctcctggttctcctggtctgcccggacccccaggtcccgct ggtggcggcttccatgtcgcaccaatctacaaccaggagaagggacctgaccccatgcgt ggaggaggaggataccactaccgtgctgatgagcctgacatgatgaacgaccgtgacatg gaggtggacaccaccctgaagagcctcagccagaaggttgagaacatccgcagccctgag ggaacccagaagaaccccgcccgcatgtgccgtgacatcaggatgtgccaccccgagtgg aagagcggccagtactgggtggaccccaaccagggctctcctctggatgctgtccaggtc ttctgcaacatggagaatggagagacctgcgtctacccatcccaggacaccgtccccatg aagaactggtataccagcaagaacatcagggagaagaagcacatctggttctcagagtct atggataatggcttccagttccactatggtagcgagggctccaacccagaggacgtcaac atccagctgaccttcatgcgcctgatgtccaacgaggcgtcccagaacgtcacgtaccac tgcaagaacagcatcgcctacatggacgaggccacgggcaacctgaagaaggccctgctg ctccagggagccaacgagatcgagatcagagccgagggcaacagccgcttcacatacacc gtcagcgaggacggctgcacgtcacatactggcacatggggcaagacagtcatcgactac aagacatcaaaaacatctcgcctgcccatcattgacatcgctcctatggacgttggtgca cctgatcaggagtttggcgtcgaagttggccccgtctgcttcgtataa

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