Coregonus clupeaformis (lake whitefish): 121578711
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Entry
121578711 CDS
T08357
Name
(RefSeq) plakophilin-1
KO
K10387
plakophilin 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
cclu04812
]
121578711
Cytoskeleton proteins [BR:
cclu04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filament-binding proteins
121578711
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Arm
ARM_ARMC5
HEAT
HEAT_EZ
Atx10homo_assoc
Arm_2
Adaptin_N
HEAT_2
LTN1_E3_ligase_6th
U3snoRNP10
Motif
Other DBs
NCBI-GeneID:
121578711
NCBI-ProteinID:
XP_041749031
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All DBs
Position
12:complement(49586987..49602649)
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AA seq
747 aa
AA seq
DB search
MMTMDPLKSAMSIGNVDETSLALPSDNKLRSKQQRVLDQVQTIKRGKSKYSKNGSLSSPT
SPVYFNIFTDSFKSPTTLNGSAFFNGTNGLSKTNGLSKTLSYEKGTKRRVLTSKESTVQR
NMSSSSQWERQFPLSPTIGKRNSSRSVPDLAPFPTTTTLQQQQLQSSALAQQLQPNRSSF
FPTERRSSQLTSNGSSQVAVKGNGVQKRNSQLIGTRQTKSSGQITSSQARIERVPSNLSV
AESKILGIKSKSEAGMNGNGQIADITMKEAVECLSSGDENYQLCGASFIQHATYSEDKAK
QEVLRLKGIPPLVNLLRSPSPQVQQTASAALRNLAFKDADNKEEVQRCGGITEALALLRD
TDSTETQKQLTGLLWNLSSADSLKPELVRSALPVLTETVVVPYTGDETNNNQDPEVFYHA
TACLRNLSCAKQVNRQAMRNCRGLVDSLVSYVQGCVAAERPDDKSVENCVCVLHNLSFQL
ESEAPALFSRITALARTPSRANAPSETGPIGCFSPQSSKVQEQESHFDYPVMEEQHPTGA
GWLFHSKTMQSYLSLLGSSQREDTLEACSGALQNLTAYHGIVSSVMSQSIVQKLNGLPHI
SPLLQSSNPSLQKTAVSLVGNLAKNQRLQSTMARQTLPELVGILSSWTKEETQCDDTLAM
ACQTSHSLLVKEPELGKPLLTNNLVNSLNDLSKKRDFPKASKAAGVLLYSLWSEKDVQSF
LKKQGMNKGSFVNDITSAAHRSVQVVE
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atgatgacaatggacccgttgaaatcggcgatgtccatcgggaatgtggatgagacatct
cttgctttgccgtccgataacaaacttcggtccaaacagcaacgagtcttggatcaggtg
caaaccatcaagaggggcaagtcgaagtacagtaaaaatggatctctgtcgtcgccaacg
agtcctgtgtacttcaacatattcactgactcctttaagtcacctaccactctcaatgga
agtgccttctttaatggtaccaatggactctcaaaaacaaatggcctctcaaaaacgctc
agctacgagaaaggcactaagcgaagggtcctgacctccaaggaatctacggtccagagg
aacatgagtagctccagccagtgggagagacaattccctctcagccccaccataggcaag
cgcaacagcagccgcagtgtgcctgacctggcccccttccccaccaccaccaccctgcag
cagcagcaactgcagtcctcggccctcgcccagcagctccagcccaacaggtccagcttc
ttcccgaccgagaggaggagcagtcagttaacctccaacggctcctctcaggtcgctgtc
aaaggcaatggggtgcagaaaaggaacagccagttgattggcacgcgtcagacgaaaagt
agcggccaaattaccagcagccaagctcgtattgagagggtgccctcaaacctctctgtg
gccgagtccaagatattggggatcaagagcaagagtgaagcggggatgaatggtaatggt
cagatagctgatataaccatgaaggaggcggtggagtgcctgtccagtggtgatgagaac
taccagctctgtggagcctccttcatccaacacgctacctactcagaggacaaggccaag
caggaggtgttgcggctcaaagggatcccccctttggtgaacctgcttaggagtcccagt
ccccaggtccaacagactgcctcggccgccctgcggaacctggcctttaaagatgcagac
aacaaggaggaggtccagcgctgtgggggcatcactgaggccctggccctgctccgagac
acagactctaccgagacacagaaacaactcacaggtctcctttggaacctgtcgtctgca
gacagtctgaagccagagctggtgcgtagtgctctgcctgtcctgactgagactgtggta
gtaccatacacaggagatgagacaaacaacaaccaggacccagaggtcttctaccatgct
acagcatgtctacgaaacctgagctgtgcaaagcaagtcaacaggcaggccatgcgtaac
tgtcgaggcctcgtcgactcactggtcagttacgtccagggttgtgtggctgcagagagg
ccagatgacaagtctgtggaaaattgtgtgtgtgtcctgcacaacctgagcttccagctg
gagagtgaggccccggccctgttcagcaggatcactgccttggccaggacccccagcagg
gccaacgcccccagtgagaccggccccattgggtgcttcagcccacagagcagcaaggtc
caggagcaggagagtcactttgactaccctgtgatggaggagcagcaccctacaggagca
ggctggctcttccactccaagaccatgcagagttacctgtctctgctggggtccagccag
agagaagacaccctggaggcctgctctggagccctacagaacctcactgcttaccacggc
attgtatctagtgtgatgagccagagcatcgtgcagaagctgaacggcctgcctcacatc
tctcccctgctgcaatcctccaaccccagcctccagaaaactgctgtgtctctggtagga
aacctggccaagaaccaacgccttcagagcaccatggcccgacagaccttgccagagcta
gttggcatcctcagctcatggaccaaggaagagacgcagtgtgatgacaccctggccatg
gcatgccaaaccagccacagtctgctggtgaaggagcctgagctggggaaacccctgctg
accaacaacctggtcaactcacttaacgacctgagcaagaagagggatttcccaaaggcc
agcaaagctgcaggtgtgctcctctacagcctctggtcagagaaggatgtacagagtttc
ctaaaaaagcaagggatgaataagggttcctttgtgaacgacatcaccagcgcggctcac
aggtctgtgcaggtcgttgagtaa
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