Coregonus clupeaformis (lake whitefish): 121579086
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Entry
121579086 CDS
T08357
Name
(RefSeq) cyclic nucleotide-gated cation channel beta-1-like
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
121579086
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121579086
Ion channels [BR:
cclu04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
121579086
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
121579086
NCBI-ProteinID:
XP_041749301
LinkDB
All DBs
Position
Unknown
AA seq
1291 aa
AA seq
DB search
MFSWVVKVVPQPPGKLGDEEKTNAPPAPVKQVTFKEEKKQEAPKLAKAKDEEVTEENGGE
AGVLTWITHGFANSLPQPAGTPRLGRAHTEEENRQGSRVMGWIAQGLASVVPQPDLKNME
EVEPAETTEIAEVSKVPEVKNKPSIAEVSKALEVKKKPIIAEVSKSPEVKKKPSIAEVSK
VPEVKKKTSVHAIQDVPDAEPLPHIPVVEVMSDEEPEEEKGIPPRVYEWIKQGFEKVVPQ
PADINKDVSAKAACPQKVTSSSPEAEEEAKENVVGWIVQGFGRMLPQPVLTPSGSENAEA
VQNILILQGHEDMVLEEVDPDWEKKENKAAQGAALLQALPSLLPQQVMAMQQEPEDAETQ
TERWTPLMESIKKEAEEAAMVKVEEKLQQQLEEARMAEEVARQAAEMAVRQLEEEQAASA
QRATDSQQEADGEQCLVDVCPAEGLPEVEAEAVSPPREASPEPEPEPEPEPPKKQSPPVT
EAPAVTEQPEPDDQKAPPTAAPQEEEGADKGGCEESFGKDRGGNVLPAVKVEDVDRDVGM
GGGRNIPQIITSQDPLSISLTVPLVPMTKHSKAVAADGSLLPVEERSAEEDDVGGVDDLE
MQTGLLTVEDEDRPTSAASYGSVIVQERVTTLVKLFKARTVRKKEKLMDPDDSEEDSPQA
SPAKAPPPPPPPPPEEDKKDIPDLVEEEEAEEYWDFYGYPIKILKLPKMPPLPSWLQTIV
DYRFPSSIDPYTDLVYVVWLFFVMMAWNWNVWLIPVRWAFPYQTADNIYWWLLMDYTCDL
IYITDIMVFQPRLEFVRGGDIVCDKKDMRDNYMTTERFKMDCISMLPMEIFYYFTGVNSL
LRFPRLLKYMAFFEFNDRLEAVMKKAYIYRVILTTSYLLYSLHINACLFYWGSDYEGLGS
TKWVYDGRGNSYIRCYYFAVKTLITIGGLPDPTTVFEITFQLVNYFVGVFAFSIMIGQMR
DVVGAATAGQNYYRACMDNTIKYMTSYHIPKEVQNRVKTWYDYTWQIQGMLDEQELLIQL
PDKMRMDMAVDVNYSIVSKVALFQGCDRQMIFDMLMRLKSVVYLPGDFVCKKGEIGREMY
IIKQGEVQVVGGPDLKTVFVTIRAGSVFGEISLLAGGGGNRRTANVMAHGFANLFILDKR
DLSDILVHYPESQKLLRKKAKKMLTKDKKPEEKAEVKETAEVIPDRPETPKLFKAALVVT
EQAGIKGTFAKLKEGYKTGETESSGLPIPPPSPMVHRRSPIPPTHPRIEDDEDAVSETTD
SMTCRHKGEELLSVEQKPGDQEEEEEEMEKK
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctgggtggtgaaagtggttccccagcctcctgggaaactaggagatgaggag
aagacaaatgccccacctgccccagtaaaacaagtaactttcaaagaagagaagaaacaa
gaagctccaaaacttgccaaggctaaagacgaggaggtcaccgaggagaatggtggtgag
gctggagtgttgacatggatcacccatggttttgctaattctcttccccagcctgctggg
acaccccggctaggcagagcccacactgaggaggagaacaggcaggggtcgagagtcatg
ggctggattgcccagggattggccagtgtggttccacagcctgatttgaaaaacatggag
gaggtggagcctgcggagacaacagagattgcagaggtgagcaaggtgccggaagttaag
aataaacccagcattgcagaggtgagcaaggcactggaggttaagaaaaaaccgatcatt
gcagaagtgagcaagtcgccagaggttaagaaaaaacctagcattgcagaagtgagcaaa
gtgccggaggttaagaaaaaaaccagcgtgcatgctatccaagatgtcccagatgcagag
cctcttcctcatattcctgtggtggaggttatgtcagatgaagagcctgaagaggagaag
ggaatcccacccagggtgtatgagtggatcaagcagggttttgagaaggtggttccccag
ccagctgacatcaacaaagacgtctcagcgaaggccgcctgcccacagaaagtgacctcc
tcctctccggaagctgaagaggaggccaaagaaaatgtggttggctggattgttcagggc
tttggtcgtatgttacctcagcctgtcctgactcccagtggatcggagaacgctgaggct
gtgcagaacatcctcatcctgcagggccatgaagacatggttctggaggaggtggacccg
gattgggagaagaaagagaacaaagcggctcagggagcagcccttctccaggccttaccc
tcactcctaccccagcaggttatggccatgcaacaagaaccagaggatgcagagacacag
acagagagatggactcccctcatggagagcatcaagaaagaagcagaggaggctgctatg
gtgaaagtggaagagaagctgcagcagcagttagaagaagcaaggatggctgaggaggtg
gccaggcaggcggctgagatggcagttagacaactagaggaggagcaggctgccagtgcc
cagagggccacagactcacagcaggaggctgatggagagcagtgcctggtggatgtgtgt
ccagccgaggggttgcccgaggttgaggcagaggcggtgtctccccccagagaggcctcc
cctgaaccagaaccagaaccagagccagagccgccaaagaaacagtctcccccagtgaca
gaggccccggcagtgaccgaacagccagaaccagacgaccagaaggctccgcctactgcc
gcccctcaggaagaggaaggtgccgacaaaggagggtgtgaagagagctttggtaaggac
agaggagggaatgtgctgccagcagttaaagtggaggatgtggacagagacgtagggatg
ggagggggtcgcaacatcccccagatcatcacctcccaggaccccctgtccatctctctg
accgtgcctctcgtccccatgaccaagcacagcaaagctgtggctgcagatggctcgctc
ctcccggtagaagagagaagtgctgaagaggatgatgttggtggtgttgatgacttggag
atgcagaccggcctcctgactgtggaagatgaggatcgtccaacatcagcagccagctat
ggcagtgtgattgtccaagaaagagtgactacactggtcaagctgtttaaagcgaggacg
gtccgcaagaaggaaaaactgatggaccctgacgactctgaggaagacagccctcaagcc
tccccagccaaggcaccccctccccctcctcccccgcccccagaagaggacaagaaggac
atcccagacctggtggaggaggaagaggcggaggagtactgggacttctatggataccca
atcaaaatcctcaaacttcccaaaatgcccccacttcctagttggcttcaaaccatagtg
gactatcgtttcccttccagcatcgacccctataccgacctggtctacgtggtttggctg
ttttttgtgatgatggcttggaactggaacgtgtggctgatcccggtgcgctgggccttc
ccctaccagactgcagacaacatctactggtggctgttaatggactacacctgtgacctt
atttacatcactgacatcatggtctttcagccccgcctggagtttgtacgcggaggagat
attgtgtgtgacaaaaaggacatgagagacaactacatgacaacagaaagattcaagatg
gattgtatcagtatgctccccatggagatattttactactttactggagttaactccctc
ctcagattcccccgcctactgaagtacatggctttctttgagttcaacgaccgtttggaa
gcagtaatgaagaaagcctacatctacagagtgatcctgaccacttcatacctgttgtat
tctctccacatcaacgcctgtctgttctattggggttctgactatgaggggctggggtcc
actaagtgggtctatgacggcagagggaacagttatatccggtgttactactttgctgta
aagaccctgatcaccatcggtggtctaccggaccccaccaccgtgtttgagatcacattc
cagctagtcaactactttgttggtgtctttgctttctccatcatgattggtcagatgaga
gatgtagtgggggctgccacagcgggacagaactactaccgggcctgcatggataacacc
atcaagtacatgacctcctaccacatccccaaagaggtccagaaccgagtcaagacctgg
tacgactacacctggcagatacagggcatgctggatgagcaggagctgttaatccagctg
ccagataagatgaggatggacatggctgtggatgttaactactccattgtcagtaaagtg
gccctgttccagggctgtgacagacagatgatctttgacatgttgatgaggctcaagtct
gtggtctacctgcctggggactttgtctgtaaaaagggtgagatcggcagggagatgtat
atcatcaagcagggggaggttcaggtggtgggaggacctgatttgaagacagtgtttgtg
acaatcagggccggctctgtgtttggagaaatcagcttgctggcagggggcggggggaac
agacgcacggccaacgtgatggctcacggattcgctaacctcttcatcctggataagagg
gacctctcagacatcctggtgcattaccccgagtcccagaaactcctccgcaagaaggcc
aagaaaatgctgacaaaggataagaagccagaggaaaaggcagaggtgaaggagactgcc
gaggtgatcccagacaggccagagacccccaagctgttcaaagcagccctggtggtcaca
gagcaggcaggcattaagggcaccttcgccaagctgaaagagggctacaaaactggcgag
actgagtcctctggactccccatacctcctccctccccgatggtgcaccgtcgctccccc
atcccccctacacatccccgcatcgaggatgacgaagatgcggtttccgagacgaccgac
agcatgacatgccgtcacaaaggtgaggagctcctgtccgtcgagcagaagcctggagat
caagaggaagaagaggaggagatggagaagaagtag
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