Coregonus clupeaformis (lake whitefish): 121584449
Help
Entry
121584449 CDS
T08357
Symbol
ttc37
Name
(RefSeq) tetratricopeptide repeat protein 37 isoform X1
KO
K12600
superkiller protein 3
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121584449 (ttc37)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121584449 (ttc37)
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
121584449 (ttc37)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_16
TPR_19
TPR_17
TPR_14
TPR_11
TPR_8
TPR_12
TPR_CcmH_CycH
TPR_9
PPTA
ANAPC3
ANAPC8
TPR_15
Fis1_TPR_C
TPR_EMC2
Motif
Other DBs
NCBI-GeneID:
121584449
NCBI-ProteinID:
XP_041756263
LinkDB
All DBs
Position
16:complement(13474511..13501662)
Genome browser
AA seq
1569 aa
AA seq
DB search
MSNKEVKSALKNARDAIKNKEFKEALKHCKAALKLEKNNYNAWVFIGVAACELEQPDQAQ
TAYRKALELEPEQLLAWQGLANLYEKSDQTDFKAELPKVYQKLIELYESSDKTKCYEVIR
KLADIYHTEKDYLQVARVWRRLIQLKEGEGADKAELLQLCQNMTCLLSDSVAEQDNETQQ
HLIAAFEKAMVLSDNVPGEDHRKLSADYLKCLSQLSHEEGKMKEACESMFALYPSQTFPL
EILSAHHLKSGVCSEDAGRCFSRLLELDPDSGLGQLGLGIRALEESKCDDAIKYLAQGLE
RMHSSLVGWCSLAQAQLKMHRYSDCATSCTQGLKLRGAGEEALGQKLLRLRLEALVRTGD
EHTADQALEILSQLSDANNDPVLVALKGRAYLQKGQVDQVLQVSTELLDFHPDLAEGLVL
RALVHIAQGQHQLAEQSLLQATAQSPACGEYYFLLGQLYWDMGEESRRDRSKAHTHLLKA
AKLDPYLGSVFRYLGHYYREVARDQGRARGCYKRAFELDSKDAESGAASVDLSMKEGDMD
TALAVLQSVIERATPGSAKWAWMRRGLYHLKVGQHPQACADLQAALRADPQDWVCWECLG
EAYLNRRSFTSALKAFAKAQLLNPSSIYSLYQTAAIKQTLGKFKEAAAEYLQIIAQEDYV
PALKGLGECLLSLARGLMEDYRDGGAIDLIQQAIQYLFRAVEQRPDLSCLWKLLGDACTS
VSTVAPSRARVVVPGLLAQLQPPDQGHLLNQGHILRVGERCYGRALKLMPESSSLWYDLG
LNYYHQARLPPCPQEMEHTTLLLLLLEKALQCVKKAIMLNSSNHSYWNALGVVAMSKGVE
NYALAQHSFIKSVQVEPNNVVAWTNLGALYLKKDNVELSHEAFKIAQSLEPLYVGCWIGQ
ALIAEMVGSYDTMDLFRHTTELSTHTEGVKGYAYWVCATLLDKSNRDSELYRYNIVQMNA
VSAAQVALSKYTERIQTDPDAFVMLGFLNEHLQLKKQAVLAYQRAVELLQAMPSVELLAF
SLGSYGRALCNTGQWEEAVHAYSSTSLEELHDLAGLALVYCRAGLIPESISAYEKALMVA
SSEKEKAYILTSLALLQHRLGNMDSAKTLLFKCSMLKEPVPESLLCLCALGLVHGDSTLA
SAALTELLKQGRATGAAVEQRCLLTCTLLALQGNHSAVQREASRAVHSNPGNPSLWALLS
RLVPQYYPRKANGGAVAGHVACLASMTQGKRALLYSGVNQLACGRHSGEDRSRNALKTMQ
RAVLLCPDDPAAWAGLMAACHTENTACSLSGSTPARRGLEQVLMAVVSEKVRNVEEVEQP
LAQALEGWVLQQAVTGLTGGGQLEQAEALCSQVLSVSPENPAVVLLLRQVQCEHLLLSSA
GTALPASVLEQLSSAVLANHTSVAAWHWLAEVYRTQGLLVQAVMAYRQSLQLASQLGLHS
GKMACLLRLALLALSPCMAKVPGDEWKELVLEATTEALKLGPSPVALLVQALLHFSTKMA
ARETRRLLERLVYAPSHGYPETVACVARWYLLRHLHAKDDLELMDTLVDQAKACGDGRLL
EFHTLLTSG
NT seq
4710 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacaaagaagtgaaatcggctctaaaaaatgctagagatgccataaagaacaag
gaatttaaagaggctctaaaacactgcaaggctgccctgaagctagagaagaacaattac
aatgcctgggtgttcattggagtggccgcgtgcgagctggagcagccagaccaggcccag
acagcctacaggaaggctctggagctcgagccagagcagctgctggcctggcagggatta
gcaaacctgtatgagaaaagtgaccagacggatttcaaagcggaactacccaaagtctac
cagaaactcattgagctttatgaaagttcagacaaaacaaaatgttatgaggtgatcaga
aaactggcagacatctaccatacggagaaggactatttacaggtggccagggtgtggcga
aggctgattcagctgaaggaaggagaaggtgctgacaaggcagagctgctgcagctatgt
caaaatatgacctgccttctctcagacagcgtggcagaacaggacaatgagactcagcag
cacttaattgcagcctttgagaaggccatggttctctctgacaatgtgcctggcgaggac
catcggaagctctcagctgactacctcaaatgcctttcacaactttcgcatgaagagggt
aaaatgaaagaggcctgtgagtccatgtttgccctctatccctcacaaacatttccattg
gagatcctcagtgcacatcatctcaagtcaggggtctgcagtgaggatgcaggccgctgt
ttctcccgtctcttggagttggacccagacagtggattaggccagctgggcttgggcatc
agagctctggaggagagcaaatgtgacgacgccattaagtacctggcccaaggactggag
cgaatgcactccagcttggtgggctggtgcagccttgctcaggcccagctgaaaatgcac
agatattccgactgcgcaacatcctgcacccaagggctgaagctgcgtggggctggagaa
gaggcacttgggcaaaagctcctgaggctgagactagaggcccttgtgaggactggggat
gaacacactgcagaccaagccctggagatcctctcacagctttcagatgctaacaatgac
cctgtcctggtagccttaaaaggaagagcgtatttgcaaaaaggccaagttgaccaagtg
ctccaggtatccacggagctgctggactttcaccctgatctggccgagggactggtgctg
agggcactagtacacatagcacagggtcagcaccaactagcagaacagagcctcctgcag
gccacagcccagagcccagcctgtggagagtactacttcctgttggggcagctctactgg
gacatgggggaggagagtcgcagggacaggagcaaggcccacacccatctactgaaggct
gccaaactggatccgtacctgggctctgtgttccgctacctgggccattactaccgggag
gtggccagggaccagggacgagccaggggctgctacaagagagcctttgagctggacagc
aaagacgcagagtccggggctgcctctgtggatctgagcatgaaggagggggacatggac
actgccctggctgtgctccagtcagtgatcgagagagccacccctggttcagctaagtgg
gcctggatgagacgaggcctatatcacctgaaggtgggccagcacccccaggcctgtgca
gatctccaggctgctctgagggccgacccccaggactgggtgtgctgggaatgtctgggc
gaggcctacctgaaccgccggagcttcacgtcggccctgaaggcctttgccaaggcccag
ctgctcaacccctcctccatttacagcctctaccagactgctgccatcaaacagaccctg
ggcaagttcaaagaggctgctgcagagtacctgcagatcatagcccaggaggactacgtg
cctgcactcaaaggccttggggagtgtctgctgtccttggccagaggcctgatggaggac
tatagagatggtggagccatagacctcatccagcaggccatccagtacctcttcagggct
gtagagcagcgtccagacctgtcctgtctgtggaagttactgggagatgcctgcacctca
gtcagcactgtggcccccagcagggcccgcgttgtggtgccaggcctcctggcccagtta
caacccccagaccagggccaccttctcaaccagggacacatcctccgagtgggggagaga
tgctatgggcgtgctctgaagctgatgcctgagagctccagcctgtggtatgacctgggt
ctcaactactaccaccaggcccgtctgcccccctgccctcaggagatggagcacaccacc
ctgctgctgctgctgctggagaaggccctgcagtgtgtgaagaaggccatcatgttgaac
agtagtaaccatagctactggaacgccctgggagtggtcgccatgagcaaaggagttgag
aactatgcccttgcccaacacagcttcattaagtcagtgcaagtggaacccaataatgtt
gttgcttggacaaacctgggtgctttgtatctgaagaaggacaatgttgagctctcccat
gaagcctttaagattgcccagtctttggaaccgctgtatgtcggctgctggattggacag
gccctcattgcagagatggtgggcagttatgataccatggacctgttcagacacaccaca
gagctcagtacacacacggagggggtaaagggctatgcctattgggtttgtgccactctg
ctggataagagtaacagggactctgagctctatcgctacaacatcgtccagatgaatgca
gtgtctgccgctcaggtggctttgagcaagtacacagagcggatccagacagaccctgat
gccttcgtcatgctgggtttcctcaacgagcacctgcagctaaagaagcaggcagtgctg
gcctaccagagagctgtggagctgctgcaggcgatgccttccgtggagttactggccttc
tccctgggaagctatggccgggccctctgcaacacaggccagtgggaggaggcagtgcat
gcttactcctccacatctctagaggagctccacgacctggcaggcctggcgctggtctac
tgcagagcaggactcatcccagagagcatcagtgcctatgagaaggctctgatggtggcc
tccagtgagaaagagaaggcctacattctgacttctctggctctgctgcagcacagactg
gggaacatggactccgctaaaacactgctcttcaaatgctccatgctgaaggaacctgtg
ccagagtctctgctgtgcctgtgtgctctggggctagtccatggggacagcacgctggcc
agcgcggccctcactgagctgctgaagcagggcagggccactggggctgccgtggagcaa
cgctgcctgctcacctgcaccctgctggctctgcagggcaaccacagcgctgtgcagcga
gaggcctccagggccgtccacagtaaccctgggaatccttccctgtgggccctgctctcc
agactggtgccacagtattaccccaggaaggccaacggaggtgcggtggcaggccacgtg
gcgtgtctcgccagcatgacccaagggaagagggcactgctgtacagtggagtgaaccag
ctggcgtgtggcagacactctggagaagaccgcagcaggaacgccctgaagaccatgcag
agggctgtgctgctctgccccgatgacccggcggcatgggcggggctaatggctgcttgt
cacacagagaacacagcctgctccctctctggctccacccctgccagacgaggcttggag
caggtgctcatggctgtggtgtcagagaaagtgcggaatgtggaggaggtggagcagcct
ctggcccaggctctggagggttgggtgctgcagcaggctgtgacaggactgacaggtgga
ggccagctagagcaggctgaggccctctgctctcaggtcctgagtgtgtctcctgagaac
cccgctgtagtcctgctgttgaggcaggtgcagtgtgaacacctcctgctgtccagcgcc
ggtactgccctgccagcttctgtcctggagcagctcagcagtgctgtcctagccaatcac
acctcagtggccgcctggcactggctggcggaggtgtatcgtacccagggtctgctggta
caggcagtaatggcatacagacaaagcctgcagctggcctcccagcttggcctccacagt
ggaaaaatggcctgtcttctgcgcctagccctgctggccctcagcccctgcatggcgaaa
gtccctggtgatgaatggaaggagctggttctggaggcgaccaccgaggctctgaagctg
ggcccctcccctgtagccctcctcgtccaggcactgctacacttctccaccaagatggcc
gccagggagacgaggcgtctgttggagaggctggtgtacgccccctcccatggttacccg
gagacggtggcgtgtgtggcccgctggtacctcctacgccacctgcacgccaaagatgac
ctggagctgatggacaccctggtggatcaagccaaagcctgtggagacggcagactgctg
gagttccacacactgctcacctctggctga
DBGET
integrated database retrieval system
