Coregonus clupeaformis (lake whitefish): 123485099
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Entry
123485099 CDS
T08357
Name
(RefSeq) short transient receptor potential channel 4-like
KO
K04967
transient receptor potential cation channel subfamily C member 4
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
123485099
Ion channels [BR:
cclu04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
123485099
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Paralog
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GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
Ank
Ank_4
Ank_3
PKD_channel
Ank_5
Egg_lysin
YVC1_C
BAR_4
CCDC22_CC
Motif
Other DBs
NCBI-GeneID:
123485099
NCBI-ProteinID:
XP_045071921
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All DBs
Position
5:complement(25348971..25370878)
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AA seq
925 aa
AA seq
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MSQLYYRRTDNSSYRDRIPLRIVRAESELSGLERNYLGAVEKGDYASIKQALEEAEIYFR
ININCIDPLGRTALLIAIENENLEIIELLLTYNVYVGDALLHAIRKEMVGAVELLLNHKK
PSREKQVPPILLDKQFSNFTPDITPIILAAHTNNYEIIKLLVQKGVSVPQPHEVRCNCME
CVSSSDVDSLRHSRSRLNIYKALASPSLIALSSEDPFLTAFQLSWELQELSKVENEFKSE
YEELSQQCKQFAKDLLDQTRSSRELELILNYRDDINPLLDENTNDLARLKLAIKYRQKEF
VAQPNCQQLLASRWYDEFPGWRRRHCAGKFLTCIFIGLLFPLFSLCYLISPKSRYGYFIR
QPFIKFICHTTSYLTFLFLLLLASQHIVSTDPNRQGPTPTVVEWMILPWVLGFIWTEIKQ
MWDGGFQDYIHDWWNLMDFVMNSLYLATISLKIVAYVKYSGFRARNEWQMWHPTLVAESV
FAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLNQLYFY
YETDEGKKGCKGIRCETQNNAFSTLFETLQSLFWSIFGLISLYVTNVEADHQFTEFVGAT
MFGTYNVISLVVLLNMLIAMMNNSYQHIADHADIEWKFARTKLWMSYFEEGGTLPSPFNI
IPSPKSIWYFICWIRKHIFKITRTKKTETFRNIGKRAAINVRINHQYQEVLRNLVKRYVA
AMIRDAKTEEGLTEENFKELKQDISSFRYEVLGMMKGKVGPGGEGVALAGSKPSEGAGAS
SLVYPDHSFKYSPKFPPATPKTNMFHDTTSVLQQRAAPSTTSSSTSPSTSQGLNRLFNGS
VVPSWASTDTSSNPTSSTPISSSSSTPIHASTKDRLARKDFPKDICDFGLYSVSDEMGEA
DLEELDCAGEKEEQEGRVKREKSQC
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaactgtactaccggaggacagacaactcctcctacagggaccggatccctctg
aggattgtcagggccgagtctgaactgtctggcctggagaggaactacctgggagcagtg
gagaaaggagactatgcctcaatcaaacaggctctagaggaggcagagatctacttcagg
atcaacattaactgtatagacccgttgggccgcacagctttgctgatagctatagagaat
gagaacctggagattatagagctgctgctcacctataacgtgtacgtcggtgacgctctg
ctacacgccatccgtaaagagatggtgggggccgtggaactgctgctcaaccataagaag
cccagcagggagaaacaggttcctcccatcctattggacaagcagttctctaacttcact
cctgacatcacacccatcatcctggcagctcacaccaacaactatgagatcatcaaactg
ctggtgcagaagggggtgtccgtgccccagccacatgaggtgcgctgtaactgcatggag
tgtgtgtccagctctgatgtggatagtctgcgtcactcccgctctcgtctcaacatctac
aaggccctggccagcccatcactcatagccctctccagtgaagaccctttcctcacagcc
ttccaactctcctgggaactacaggaactcagcaaggtggagaatgagtttaagtcggag
tatgaggagttatctcaacagtgtaaacagtttgccaaggacctgttggaccaaaccagg
agctccagagaactagagctgatcctgaactacagagacgacatcaaccctctactggat
gagaacaccaacgacctggccagactcaaactggctatcaaatacagacagaaagagttt
gtagcccagcccaactgtcagcagctgcttgcgtctcgttggtacgatgagttccctggg
tggaggcgtcgtcactgtgcagggaagttcctaacctgtatcttcatcggcctcctcttc
cccctcttctccctctgctacctgatctctcctaaaagccgctatggatacttcatcagg
caacccttcatcaagtttatctgccacacaacgtcgtatctcaccttcctgttcctgctg
ctgctggcctcccagcacatcgtctctacagaccccaatagacaggggccgactcctact
gtggtggaatggatgatactgccctgggtactgggctttatctggacagagattaaacag
atgtgggatggagggttccaggactatatccatgactggtggaacctcatggactttgtt
atgaactctctgtacctggctaccatctctctgaagattgttgcctatgtcaagtacagc
ggcttcagggccaggaacgaatggcagatgtggcatcctaccctggtagcagagtctgtg
tttgccatcgctaacatattcagctccctccgcctcatctctctgtttacagctaactca
cacctgggacctctacagatctctctgggcaggatgctgctggacatccttaagttcctg
tttatctactgcctggtgctcttggctttcgctaatgggctcaaccagctctacttctac
tacgagacagatgagggaaagaagggatgcaagggcatccgctgtgaaacacagaacaat
gctttctcaacgttgtttgagacgctccagtcattgttctggtctatctttgggttgatc
agtctgtatgtgaccaacgtggaggcagaccatcagttcacagagtttgtaggggccacc
atgtttggaacctataatgtcatctctctggtggttctactcaacatgctcatcgccatg
atgaacaactcctaccaacacatcgctgatcatgcagacattgagtggaagtttgcaaga
accaagttgtggatgagttactttgaagagggagggactctgccttctccattcaacatc
atccctagccccaagtcaatctggtacttcatctgctggatcaggaaacacatcttcaag
atcaccaggaccaagaaaacagaaacatttagaaacatagggaaacgggctgctataaac
gtaagaataaaccaccagtatcaggaggttttgaggaacctggtgaagagatatgtagca
gccatgatcagagatgccaagacagaggaaggactgactgaggagaactttaaggagctg
aagcaggacatctccagctttaggtatgaggtcctggggatgatgaaggggaaggtgggg
cccgggggtgagggcgtggctttagcaggaagtaaacccagtgaaggggcaggggcctcc
agtctggtctaccctgaccactccttcaagtactcccccaagttccccccggccacgcct
aagaccaacatgtttcacgacaccacatccgtgctccagcagagggcagccccctccacc
acctcctcctccacatccccttccacctctcagggcttgaacagactgttcaacggctct
gtggtaccctcttgggcctccactgacacctcctccaacccgacctcctccactcccatc
tcctcttcctcctccactcccatccatgcctccaccaaagacaggctggccaggaaagac
tttcccaaagacatctgtgactttgggctctactctgtgtctgacgagatgggggaggct
gacctggaggagctggactgtgctggagagaaggaggagcaggaggggagagtgaagaga
gagaagagtcaatgttaa
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