Coregonus clupeaformis (lake whitefish): 123486448
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Entry
123486448 CDS
T08357
Name
(RefSeq) antigen peptide transporter 2-like
KO
K05654
ATP-binding cassette, subfamily B (MDR/TAP), member 3 [EC:
7.4.2.14
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu02010
ABC transporters
cclu04145
Phagosome
cclu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
123486448
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
123486448
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
123486448
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cclu02000
]
123486448
Enzymes [BR:
cclu01000
]
7. Translocases
7.4 Catalysing the translocation of amino acids and peptides
7.4.2 Linked to the hydrolysis of a nucleoside triphosphate
7.4.2.14 ABC-type antigen peptide transporter
123486448
Transporters [BR:
cclu02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB2, 3, 8, 9, 10 subgroups
123486448
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
AAA_22
ABC_ATPase
AAA_16
Rad17
AAA_30
AAA_29
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
123486448
NCBI-ProteinID:
XP_045073701
LinkDB
All DBs
Position
Unknown
AA seq
723 aa
AA seq
DB search
MLRMCAFAMALGICIDITTFCAPGFGASIFETGPSTFNYFGNLERLWVVAGIRLVLLLGL
SLLTLGSIKPVFKRWLAVHCFLAPVYETVRLMLYGGSPESAYGSLGGPSLWLLCTAAVAA
AALFWETTFPDSNGESNGKQKKQKARVLFMRVLIFYRPDTLLLIGAFIFLSLAVLCEMFI
PYYTGKVIDILGTQYKWNNFLTAIILMGLYSLGSSFSAGCRGGLFMCAINSFTSRMKVEL
FGALVKQDIGFFETIKTGDITSRLSTDTTLMARAVALNVNVLLRTLIKTVGMLSLMMSLS
WKLTLLMLMETPITGLLQSIHDNYYLRLSKEVQDSMARANEAAGETVAGIRTVRSFKTEQ
REAGRYNDRLMDTHNLKTRRDTVRAVYLLLRRLTALVMQVVMLYYGRLFIQRGQMSTGNL
VSFILYQSDMADNIRTLIYIFGDMLNSVGAAGKVFEYLDREPQVSTKGTLQPETLTGHIH
FNNLSFSYPTRQERKVLQGFSLELRPGQLTALVGPSGGGKSTCVSLLERFYQPQQGEILL
DGLPLQSYQHHYLHRKVAMVGQEPVLFSGSIKDNIAYGLADCSLERVQEAARRANAHSFI
SQLEKGYDTDVGERGGQLSGGQKQRIAIARALIREPQVLILDEVTSALDTESEHMVQEAL
ASCPSQTLLVIAHRLKTIERADQIILIDQGTVLEQGTHQELMDRKGSYYKLRERLFTEDN
TPH
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgcttagaatgtgcgcgttcgctatggctttaggtatatgcattgacataaccacattt
tgcgcaccgggttttggcgcatctattttcgaaactggaccaagcacttttaattatttc
ggaaatctggagcgtctatgggttgtagcggggattcgattagttctgttactcgggtta
tcgctactcacactaggatcgataaaacccgtattcaagcgctggttagcggtgcactgt
ttccttgccccggtctatgagactgtgcgactgatgctgtatggaggttcaccggagagc
gcgtatggatcgttggggggtccaagtttgtggctattgtgtacggcggcagtagctgca
gcagccttattttgggagaccaccttccctgacagcaatggagaaagtaacgggaaacag
aagaagcagaaggcacgagtgctgttcatgagagtcctcatcttctacagacctgacacc
ctccttttgattggggcgtttatattcctgtcactggctgtcctctgtgaaatgttcatc
ccatactacacgggaaaagtgattgacatcttgggtacccagtacaagtggaataacttt
ctcacagctatcatcctcatggggctttactctttgggaagctctttcagtgcaggctgt
cgtggaggcctcttcatgtgtgccatcaacagcttcacctctcgaatgaaagtagagctg
tttggggccctggtgaagcaggacattggcttctttgagaccatcaagacaggtgacatc
acgtcccggctgtccacagacacaactctgatggcccgggcggtggccctaaatgtcaac
gtcctactgaggaccctcattaagaccgtgggtatgctgtcgctcatgatgagcctatcc
tggaagctcactctgctcatgctgatggagacgcccatcaccggcctgctgcaaagcatc
catgacaactattatctgaggctctctaaggaggtgcaggactccatggccagggcgaac
gaggcagcgggggaaacagttgcgggaatccggaccgtacgaagcttcaaaactgagcag
cgtgaggctggtcgctataacgacaggttgatggacacccacaatctcaagaccaggcgg
gacaccgtcagggcagtctacctgctcctgagaagactaacagcgctggtaatgcaggtg
gtcatgctgtactatggcagactgtttatccagcgaggtcagatgagcaccgggaacctg
gtctctttcattctctaccagtctgacatggcagacaatatcaggactttgatttacatt
tttggcgacatgctgaattcggtgggggcagctggtaaggtgtttgagtacctggacaga
gagccccaggtcagcaccaaggggaccctccaaccagagaccttgactggacacatccac
ttcaacaacctctccttctcctatcctacccgccaggaacgtaaagtactgcagggcttc
tctctggagctgaggccgggtcagctgactgctctggtggggccgtcaggaggggggaag
agcacctgtgtcagtctgctggagaggttctaccagcctcagcagggagagatcctattg
gacggactgccactgcagagctaccagcaccactacctacacaggaaggtggccatggtg
ggccaggaacctgttctgttctctgggtccataaaggacaacattgcctatggtctggca
gactgctctctggagagggtacaggaagctgctcgcagagccaatgcccacagcttcatc
agccaactggagaaaggttacgacacagatgtaggagagcggggtggtcagctgtccggc
ggtcagaagcaacgtatcgccatcgccagagctctgatcagagagccacaggtcctcatc
ctggacgaggtcaccagcgcactggacactgagagcgaacacatggtccaggaggccctg
gctagctgcccctcccagaccctgctggtgattgctcataggctgaagaccattgagagg
gcggatcagatcattctgattgaccaggggaccgtcctggagcagggcactcaccaggag
ttgatggacaggaaggggagctactacaaactaagagagagactgttcacggaagacaac
acaccacattga
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