Cyphomyrmex costatus: 108771238
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Entry
108771238 CDS
T11118
Name
(RefSeq) transcription initiation factor TFIID subunit 3 isoform X1
KO
K14650
transcription initiation factor TFIID subunit 3
Organism
ccoa Cyphomyrmex costatus
Pathway
ccoa03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ccoa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108771238
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccoa03021
]
108771238
Transcription machinery [BR:
ccoa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
108771238
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Bromo_TP
PHD
PHD_2
PHD_UBR7-like
PHDvar_NSD
PHD_5
Motif
Other DBs
NCBI-GeneID:
108771238
NCBI-ProteinID:
XP_018392747
LinkDB
All DBs
Position
Unknown
AA seq
1022 aa
AA seq
DB search
MSAEYSRNVLKIVVAQICQTIGWHSINSTPLEFLVDLLQEYLLRISKLTHQYTEVLGRTE
PNLDDLGLTFQYMNIDIQELAEYVKNVDSVQCPIQVPQYPIRRENHLNFLKPGSREVVTR
PVHVHEHLPAMYPDTEEEYISDKNESLMNGIADLTSSSGTSSGNSNNASPHRMSPQVVFK
RPGDPVSFESPMAKRAKILEEGRPLREISSVMMTTSGFLSPAREGKLPEARTPHQVRSDS
PQPSSYPMVPPELKTDKKPKKVVKKGPENRKLDKENKKKKGAKELFKPDKIAESKVKKLV
GMKELAKLKPLKLGSGKGQSTTLQELTGSRPPTPKITSPKLTTSSPKSSKTTQPKTKTEK
VVDAIEVPPTVEKKEETVDKLPSEPDKQKLNIFKKISKPREEKDKEITEPHKYKDILDSR
ENSPELIIDVENAEKHVHRNDTDPKGGREEKKTPHTPDVHIQSDSDLADVQSLSSDVYIF
DDADISPPGTPSTPKTPELSVPTVPEQKRKKKEKSSKKKEPKLKNPKQCISPKKTKPLND
LAELDIPDRPKTPQAPEPIQPILPITLPFPFFPPFPSAPGLIPPMFPRFSMPLGRGGPGP
HPAMPNLPLPPRFTNPPIKPEDFPLSKIKPVEREKPLIPPPAELTPPSILAENEKTEKEK
VVERDNKLTKMFKPNKELPFMKVPERILPVGVAPPIMSAPLAPITLTTPSVPIVQMPSSK
NLKAEKTEKNDVVNSKSKEHKKEKKDKLKKKKDKKEKHKDKGEKVKEKKEKTEKREKLEK
LKEKKEKKEKKKEKDQNKKNMMKEEKNPEAVPKITLKLGTASPRPATPDNAPMKKITIKA
LVKKPDEEIKREPSPELAKISALVTRPPKQKSASKKTEEGILDGSLALPTDCFSLTSAPL
ASVPRAKKSNFQNLSQSEPIPSPQFDNPTKLPNPLVPPQQPPYYFDRGGRQVWICPACGN
QDDGSPMIGCDDCDAWYHWVCVGMQVPPAEDEDWYCRFCIAKKELLHDKKKKKRKKKVKV
TA
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atgtcagctgaatatagtcgaaacgttttgaaaatagtagtcgcacagatctgtcagacg
ataggatggcattctatcaattctacgccattggagtttctagtagatcttttgcaggaa
tatttattacgtatttcaaaacttacacatcaatacacagaagtcttgggaagaacagaa
ccgaatcttgatgacttaggactaacatttcaatatatgaatattgatatacaggaatta
gcagaatatgtgaaaaatgttgattctgttcaatgtcctattcaagtaccacagtatcca
attcgacgtgaaaatcatttaaattttttaaagccgggtagtcgtgaagttgttacaaga
ccagtgcacgttcatgaacatttaccagctatgtatccagataccgaagaggaatacata
tctgataaaaatgaaagtttaatgaatggcatagcggacttgacatctagcagtgggaca
tcatcaggcaattcgaataatgcgtcacctcacaggatgtcgccgcaagtggttttcaaa
cggcctggtgatccggtgtcttttgaaagtcctatggcaaagcgcgcgaaaattttggaa
gaaggtagaccattacgtgagataagcagcgtaatgatgaccacttctggttttttatca
cccgcgcgagaaggaaagctacctgaagcaagaacgccgcatcaagttcgatcagattca
ccgcaaccaagctcttatccgatggtaccgcccgaattgaaaactgacaagaaaccgaag
aaagttgtgaagaaaggtcctgagaatcgtaagcttgacaaagagaacaagaagaagaaa
ggcgcgaaagaactattcaagccagataagattgccgagagcaaagtaaagaaattagtt
ggtatgaaagagctggctaaattaaagccgttaaagctaggcagtggcaaaggacaatct
accacgttacaagaacttacgggtagcaggccaccaacgccgaagatcacgtcaccaaaa
ttaaccaccagtagtccgaagtcatcgaagacaacacaaccgaagaccaagaccgaaaag
gtagtagatgcaatagaagtccctcccactgtcgaaaagaaggaggaaactgttgacaaa
ttgccatcagagccggataaacagaaactgaatatattcaagaaaatatcgaaaccacgt
gaagaaaaagacaaagaaataacggagccgcacaagtacaaggatattctggattcgcgt
gaaaattcgccagagttgatcatagatgttgagaatgcagagaagcacgtacatcgaaac
gacacggacccgaaaggaggacgcgaagagaagaagacacctcatacaccggacgtgcac
atacaatcggacagtgatttggcagatgtgcagagtttatcttcagatgtttacatattt
gatgatgctgatatttcaccaccaggtacacccagtacgccaaaaactcccgaattaagt
gtacctacggtgccggaacagaaacgaaaaaagaaagagaagagtagtaaaaagaaagaa
cctaagttaaagaatccgaaacaatgtatcagtccgaaaaagacaaaacccctgaatgat
ttggcagagttggatataccagatcggcccaagacaccgcaggcacccgaaccaatacag
cctattcttccgatcacacttccgttcccctttttcccaccgtttccttcggcacctggt
ttaattcctccgatgtttccgcgattttcaatgccacttggacgaggtgggccgggtcct
catcccgccatgcccaatttaccattaccgccgcgttttaccaatccacccataaagccc
gaagactttccattgtccaaaattaaacctgtagaacgtgagaagccactgattcccccg
ccggccgagttaacgcctccatcaattctagccgaaaatgagaagacggaaaaagagaaa
gtggtagaaagagataataaacttacgaaaatgtttaaaccgaacaaagaattgcctttc
atgaaagtacctgagaggatactccctgtaggcgttgcaccgcctataatgtctgcacct
ctcgcaccaattacgcttactacaccatcagtacctatcgttcaaatgccatcatcgaaa
aatcttaaagctgaaaaaacagagaagaatgatgtggtgaattcgaaatctaaagaacat
aaaaaagaaaagaaggataagttaaaaaagaagaaggataagaaggaaaaacacaaagat
aaaggcgaaaaagtgaaggagaagaaagaaaagactgagaaacgcgagaaattggaaaaa
ctcaaagaaaagaaggagaaaaaagaaaagaaaaaggagaaagatcaaaataagaagaat
atgatgaaggaagaaaagaatccagaagctgttccaaaaatcacgttaaaattaggtaca
gcttctcctagaccagcaactccagataatgcccctatgaagaaaataactattaaagca
cttgtgaaaaagcccgatgaagaaatcaagcgggaacctagtccagaattggcaaaaata
tcggcattagtaacacgaccaccaaagcaaaagtcagcaagtaagaaaacagaggaggga
atattagatggaagccttgctcttcctacagactgtttctctcttactagcgcgccactt
gcatcagttcctcgagcaaagaaatctaacttccaaaatctatctcaaagtgagccaata
ccttcacctcagtttgacaatcctactaaactcccgaatcctctagtgccgccacaacaa
ccaccatattattttgatcgagggggtcgacaagtgtggatatgtcccgcatgcggcaat
caggatgatggctcgccaatgatcggttgcgatgattgtgacgcttggtatcactgggtg
tgtgtcggtatgcaagttccacctgctgaagatgaagattggtactgccgcttttgtata
gcaaaaaaagaactacttcatgataagaagaagaaaaaaaggaaaaagaaagtgaaagta
acggcctag
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