Cyphomyrmex costatus: 108775531
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Entry
108775531 CDS
T11118
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ccoa Cyphomyrmex costatus
Pathway
ccoa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccoa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108775531
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccoa03019
]
108775531
Messenger RNA biogenesis [BR:
ccoa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108775531
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108775531
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CNOT1_CAF1_bind
Not1
NOT1_connector
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
Motif
Other DBs
NCBI-GeneID:
108775531
NCBI-ProteinID:
XP_018397425
LinkDB
All DBs
Position
Unknown
AA seq
2061 aa
AA seq
DB search
MAVTQMDSNTLVELIMELGYSFTSSIDECRSALTGLGAREISPACVARVLSQMACSCSNL
DDTGGLQTFWGNSTASQDSNKEKSSDSTIPTTWNVEVFVLTLKEIQSTLSWNEVIVKLDH
AEFLIKDRQGLNLLITGLKLGLQHQGYPPDMFPVELLYRHWEHIESQFSLIQQILKCPDI
FCFADYPYHSVTVDVLKAAPEGDSKEGQTWRSLNIVELLLHMAERGLYNPVQEIFKWPLQ
HCPDVLILALLQINPPFTLLRQEMFTTLLPIFLGNHPNSAVILHHAWHANNPKIKTLIMH
AMADWYTRGDYDQTRLSRILDVAQDLKALSALLNSQSFPFVIDLACLASRREYLKLEKWL
TDKIRDHGEVFVAACVKFLQRRCPQVMGPGIKEDPIVPKASQLPQETLTTILACLQVCAG
NVSQELSELIMTMVQNCSLMLSKSTMNRPPPPGVLRHRGLEPFNPATLGSQLFSSKQVDP
LGNLGSSLASMSLGTGLGPPSSSAFNLPGALGPLVSAPGSPSRLMGPSPSPFPMLPLSSQ
LHSGPVGTQGPSVLPSGTIGGLGRLGPPAGIEKTRMPETSNLFPDMGQNVSKEVEDEANS
YFQRIYNHPPHPTLSIDEVLDMLKKFQDSGIRREREVFNCMLRNLFEEYRFFPQYPEKEL
QITAQLFGGIIERGLVNSYMTLGLALRFVLDALKKPEGSKMYYFGITALDRFKSRLKEYQ
TYCEHVRTISHFTEFPPHLVEYIEYGLQGQEPPSRPQGPKTLAAMLAPVTTPYKTMTTTT
ITTSTTQAKPSTTPTTSLSARPSMPSVANATNIDTLLVATDKEEKITTPPEALQDKTAFI
FNNLSQLNLQQKCDEIREIVTEEYWPWMAQYLVMKRASIELNFHALYSNFLDCIKLPEVN
KMVTRETFRNIKVLLRSDKGIANFSDRSLLKNLGHWLGMLTLGRNKPILQIDIDLKSLLV
EAYHKGQQELLYVVPFVAKVLESCAKSRVFRPPNPWTMAIMNVLAELHQEPDLKLNLKFE
IEVLCKNLSIDVGELKPVIYLKDTEKLRNLDYQLSHPNKKSETTSNQQQSQGPMEELIGS
TTSGTINPQTVPPADTTPSLPTGQPEPRFNYMDICVTGIANISQHITINNQIPLFQTHPH
LKQFIRPAVERAIQEWIHPVVDRSIKIALTTSEQIVRKDFALDSEEMRIRTAARHMVRNL
TAGMAMITCRDQILASISTNLKQAFLTALIGTATPQQKELVELAANQVATENMELACAFV
QKTAIEKAVPEMDKRLLNDVELRKLARQEGRRYCDPIIKYQAERMPEQIRLKISGVTPQQ
MAVYEEFARNIPGFLPLSERDTQTLFIPKPISEAPLTAFTPNSAMAVATAQVAAYATVAV
SNDEVGAMLEKLATEVEVLAAAMAPAVPPQQHAILHSLLESIILTRRSRDANAAMALLKK
AVEGLLDGPIFNSGVIDSDNLIQRYRELHLRILKCLQDPRAYGMQWTNKHVTRCLIECRE
EYRYNFEAVDYLIRSHLISLPQYDIAVAQAVEAGNALATVFAMQLVQLYLIDERQATHVT
ETDLFHTLEILARMSHHRTPPEGISLYRLTSLVESLRANHDTNAVLVDRAPAGPTAHIHS
GILQVRARDFDDPPGLMDKTEYLLREWVQMHHNPQYARDPTKAFSIFVHQMNIHGILKTD
DLITRFFKLSTQMCVDLCYRTLSETGLAPSIIRAKCFHSLDAFVRLVALLVKHSGDATNT
HTKINLLNKVLGIVAGVLLQDHEIRGTDFQQLPYHRIFIMLFLELCAPEPVLEAVNFQVL
TAFCHTLHILRPAKASGFCYAWLELVSHRVFIGRMLAITPQQKCWGMYAQLLIDLFKYLA
PYLRNAELAKPVTSLYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQMRNLILSAF
PRNMRLPDPFTPNLKVDMLQEIAHAPRVLTNFASTIQPLTFKKELDSYLKARAPVTFLSE
LRSNLQVSQEAGVRYNIQLMNALVLYVGSQAISFIRSKPCSQHVYYCTFRTHGYFPEFGR
RSGYRRSIFVPKRHSESVTIS
NT seq
6186 nt
NT seq
+upstream
nt +downstream
nt
atggccgttactcaaatggatagtaacactctcgtagagttaattatggaattaggctac
agctttactagtagtatagatgaatgtcgatcggcattaacaggtttaggtgctagggag
atatccccagcatgcgttgctcgtgtattgtcacaaatggcatgtagctgtagcaacttg
gatgatacaggaggcctacaaacattttggggcaattcaactgcttcgcaagactccaat
aaggaaaaatcatcggacagtaccattcccacaacatggaatgttgaagtatttgtccta
acattgaaagagatacaatctacattgtcttggaacgaagtcattgtgaaattagatcat
gcagaattccttattaaagacaggcaaggtttaaacttgttgatcacgggtctcaagtta
ggcttacaacatcagggatatccacctgatatgtttcccgttgagcttttgtatcggcac
tgggaacatatagaaagccaattttctttaattcagcaaatcctcaagtgcccggacata
ttttgttttgctgattatccgtatcattcggtaacagtcgatgtattgaaagcagctcct
gaaggggatagtaaagaaggacaaacttggcggtcattgaacatagtcgagttgctttta
catatggctgaaagaggcttgtacaatcctgtacaggaaatcttcaaatggccactccag
cattgcccggatgtgctcatcttagcattattacagataaatcctcctttcacattactc
aggcaagaaatgtttaccacgctgttgccaatctttcttggcaatcatccaaattctgct
gtgatactacatcatgcatggcatgctaataatcccaaaataaaaacacttataatgcat
gctatggcagattggtatacgcgtggtgattatgatcaaacgagattatcacgcatcttg
gatgttgcgcaggatttaaaagcattatctgccttacttaattcacaatcttttccattc
gtcattgatcttgcttgtttggcatctcgacgagagtatctgaaactggaaaaatggtta
acagacaagattagggatcatggagaagtttttgttgctgcatgtgtcaaatttctacaa
cgacgatgtccccaagtcatgggccctggtatcaaagaagatcctatagttcctaaggca
agccagctgccacaggaaacactcactacaattttggcttgcttacaagtttgcgctgga
aatgtctctcaagaactttcggaattaataatgacgatggtacaaaattgtagtctaatg
ctgagtaagagcaccatgaacagaccaccaccaccaggagttctaaggcatcgaggatta
gaaccctttaatccagcaactttgggaagccaactattttcctcaaagcaagtggatcct
cttggaaatcttggttcaagtcttgcttccatgagtctgggcacgggtcttggaccacca
agtagctctgcattcaatttgcctggtgcgctaggtcctctggtttcagcgcccggatct
ccttcacgactcatgggaccttctcccagtccatttcctatgttgccgttatcttcacaa
ttacattcgggtccggttggtactcagggaccatctgtacttcctagtggtacaataggt
ggattgggacgtctcggaccaccagccggtattgagaaaacgagaatgccggaaacctct
aatttgtttccagatatgggacaaaatgtctccaaagaggtcgaagacgaagctaatagt
tattttcaacgtatttacaatcatcctccacatccaactttatcgatcgacgaagtgctt
gatatgttgaaaaagtttcaagactctggtattagacgggaaagagaagtgtttaactgt
atgctgcgaaatttattcgaagaatacagattttttccacagtacccggaaaaggaattg
caaataacagcacaattgttcggtgggattattgaaaggggtcttgtcaacagttacatg
acacttggattagccctacgtttcgttcttgatgcacttaaaaaacctgaaggtagcaag
atgtattattttggtataacggctttggatcgatttaagagtcgtttgaaggaatatcaa
acatactgcgaacatgttcgaacgatttcgcattttaccgaatttcctcctcacttagtg
gaatatattgaatatgggttacaaggacaagaaccaccatcgaggccacaaggtccgaag
actttagcagcaatgttggctccagtaacaaccccgtacaaaactatgactacaactacc
atcacaactagcactacacaagcgaaaccatctacgactccgactacgtctctttcagct
agaccctctatgccctcagtggctaatgcaactaatattgatacgttacttgtggcaaca
gacaaagaggaaaaaattacgacaccaccggaagcattgcaagataaaactgctttcatt
tttaataatctcagtcaattgaacctacaacagaaatgtgatgaaatccgtgagattgtc
acagaagaatactggccatggatggcacagtatttagtgatgaaacgtgccagtatagaa
ttaaactttcatgctctatactcgaattttttggattgcataaaattacctgaagtaaat
aaaatggtcacaagagaaacattccgaaatatcaaggttctcttacgaagcgataaggga
atagccaatttctctgaccgatctctattgaaaaatttaggacactggctcggaatgttg
acacttggcagaaacaagcctattttacagatagacatagatttaaaaagtttactcgtt
gaagcatatcacaaagggcagcaagaacttctttatgtagtgccctttgttgcaaaagta
cttgagagttgtgcaaaaagtcgtgtatttcggccacccaatccatggaccatggcaatt
atgaatgttttagccgaactacatcaagaacctgatttaaaattgaatttaaaatttgaa
atagaagtactttgcaaaaatctcagcattgatgttggggaactaaaaccggtcatttac
ttgaaagataccgaaaaattacgcaatttggattatcagttgtcacatccgaacaagaag
tcggagacgactagtaatcaacagcaatctcaagggcctatggaagagttgattggatcg
acaacgagtggtactattaatcctcaaactgtaccacctgcagatacaacaccttcattg
ccgactggtcaacccgaaccacgatttaattacatggatatatgtgtaacgggcattgct
aatatatctcaacatattaccatcaacaatcaaatacctttattccaaactcatcctcat
ttgaaacaatttattcgtcctgctgttgaaagagcaattcaggaatggatccatcccgtc
gtggataggtccattaaaattgctcttacaaccagcgaacaaattgtgagaaaagatttt
gcattggattcagaagaaatgcgaattcgtacagcagcacgtcacatggtgcgtaatcta
accgctggtatggctatgatcacatgtcgtgatcagattctggcatcaattagcacgaat
ctgaaacaagcatttctcacagcgttgattggtactgcgactccgcagcagaaagaactt
gtcgaacttgcggcaaatcaagttgctacggaaaacatggaacttgcatgtgcatttgta
caaaagacagctattgagaaagcagtacctgaaatggacaaacgactattaaatgatgtt
gagttacgaaaactcgctcggcaagaagggagaagatattgtgatcctattattaagtat
caagccgagaggatgccagagcaaataaggctgaaaattagtggcgtaacacctcagcaa
atggctgtatatgaagaatttgctagaaatattccaggatttcttccgctttccgaacga
gatacgcaaacactttttataccgaaacctatttctgaggctcctctcactgcattcacg
cccaactctgcgatggcagtcgctacagcacaagtagcagcctatgcaactgtagcagtt
agcaacgacgaagtaggtgcgatgttagaaaaacttgcgacggaggttgaagtcttagcg
gctgcgatggcacctgcggtacctccacagcagcatgctattcttcacagtcttctagaa
tctattatacttacgagaagatcaagagatgccaatgcagctatggcattattaaagaaa
gctgtggaaggtttgctggatgggcccatttttaacagtggtgtcattgactctgataat
ctaatacaacgttacagagaactacacttacggatcttaaagtgtcttcaagatccacgc
gcgtacggtatgcaatggaccaacaagcatgtaactcgttgtttgatcgaatgtagggaa
gaataccggtataactttgaagccgtagactacctcataagatctcacttgattagtctt
ccgcaatacgacatagctgtagcacaagctgtagaggcgggaaatgctttggcaacagta
ttcgctatgcagttggttcaactttatttgattgatgagaggcaggcaactcatgttacc
gaaactgacttattccatacacttgagatattggctcgaatgtcacatcaccgaacacca
ccggaaggaatctcactctatagattgacaagtctagtagagtcgctacgtgccaatcac
gatacgaatgctgtattggtagatagagctccagcaggacctacggcacacattcattct
ggaatcctgcaggtgagagctcgggatttcgacgatccacccggactgatggataagaca
gaatacctattacgtgaatgggtgcaaatgcatcataacccacagtatgcacgagatccc
acgaaagcatttagcatatttgttcatcaaatgaacattcatggtatcctgaagactgac
gatctcattacgagattcttcaagttgagcacacaaatgtgcgtcgacctttgctaccga
actctatcagaaactggcttagctccctcgataatacgtgcgaagtgcttccattcattg
gatgcgttcgtacgtctcgtagcactcctagtgaagcactcgggcgatgctactaatact
cataccaaaataaatcttttgaataaggtgctaggtattgtagccggtgttctgttacag
gatcacgaaatacgtggcactgatttccaacaactgccgtatcatagaatctttatcatg
cttttcttggaattatgcgcgcccgagccggtattggaggccgtgaatttccaagttcta
actgctttctgtcatactcttcacattttacgaccagcaaaagcgtcaggcttttgttat
gcctggctggaattggtttcgcatcgagtcttcattggtcgcatgctggctattacgcca
cagcaaaaatgttgggggatgtacgcgcaacttcttatcgatctattcaagtacctcgca
ccttatcttcgaaacgcggagctagcgaagcctgtgacgagtctgtacaaagggacccta
cgtgtgttgctcgtactgcttcatgactttccggagttcctttgcgattatcattatgga
ttttgcgatgtgataccaccgaattgcatacaaatgagaaatctgatcttgagtgcgttt
ccgagaaatatgcgcctacccgatccgttcacgccgaatctgaaggttgatatgctgcag
gagatagcgcacgctccgcgtgttctcactaatttcgcgtcaacaatacaaccgttgact
ttcaagaaagaactcgattcttatttgaaggctcgtgcaccggtcacctttctatctgaa
cttcgtagcaatttgcaagtgtcgcaagaggccggtgtgcgttataatattcagctgatg
aatgctctagtgctgtacgtaggctcgcaggctatatcatttattcgcagcaaaccatgc
tcccaacatgtctactattgcacattccgcacacatggatattttccagaatttggccgt
agatctggataccgaaggtcgatatttgttcctaaacgccatagcgaatcagttacgata
tcctaa
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