Campylobacter concisus ATCC 33237: CCON33237_0687
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Entry
CCON33237_0687 CDS
T04635
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ccoc
Campylobacter concisus ATCC 33237
Pathway
ccoc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ccoc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CCON33237_0687 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccoc03021
]
CCON33237_0687 (rpoB)
03400 DNA repair and recombination proteins [BR:
ccoc03400
]
CCON33237_0687 (rpoB)
Enzymes [BR:
ccoc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CCON33237_0687 (rpoB)
Transcription machinery [BR:
ccoc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CCON33237_0687 (rpoB)
DNA repair and recombination proteins [BR:
ccoc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CCON33237_0687 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ALF47377
UniProt:
A0A0M4SGY6
LinkDB
All DBs
Position
679251..683396
Genome browser
AA seq
1381 aa
AA seq
DB search
MLNSLYSGNRLRVDFSNVVKEIDVPNLLQLQKKSFDNFLNLNNNQTESGIEKVFKSIFPI
HDPQNRLTLEYVSSEIGKPKYTIRECIERGLTYSVNLKMKIRLIVHEKDDKTGDKVGVKD
IKEQEIFIREIPLMTDRISFIINGVERVVVNQLHRSPGVIFKQEESATVANKLIYTAQII
PDRGSWLHFEYDTKDILYVRINKRRKVPVTILFRALGYKKQDIIKLFYPIQNLTIKNNKF
LTLFNPEDYLGRVEYDIKNEEGDVLHQAGKRLTKKKADKLIEDGVKFVEYPIEALIGRYL
ANPVINTESGEILYDTLSALDENKLAKILAEHESIEIINNSAAGVDDAIINSFIADNDML
KVLKQTESVDDENDLAAIRIYKVMRPGEPVVKEAAKSFVNDMLFNPERYDLTKVGRMKMN
HKLSLDVPEYVTLLTSEDIIKTAKYLIKVKNGQGHIDDRDHLGNRRIRSIGELLASELHL
GFVKMQKAIRDKFTSLSNNTEEIMPYDLINPKMITATIMEFFTGGQLSQFMDQTNPLSEV
THKRRLSALGEGGLVKERAGFEVRDVHPTHYGRICPVETPEGQNIGLINTLSTYAKVNDL
GFVEAPYKKVIDGKVTDEIVYLTATQEEGNVIAPASTKLDENGHIVEDLIEVRKDGEMML
ARREDVTLIDLCSGMIAGVAASLIPFLEHDDANRALMGSNMQRQAVPLLRSTAPIVGTGM
ESVIARDAWESVKARRSGVVEKVDNKNIFILGEDEAGPYIDHYSLEKNLRTNQNTTFSQH
PIVKKGDEIEANQIIADGPSMEKGELAIGKNALIAFMPWNGYNYEDAIVISEKMIREDAF
TSVHIYEKEIEARELKDGVEEITKDIPNVKEEELMHLDESGIVKIGTEIKPGMILVGKVS
PKGEVKPTPEERLLRAIFGEKAGHVVNKSLYASASMEGVVVDVKIFTKKGYEKDSRTNKA
YEEEKTLLEKEHHDRLLMLDREEMLKVTALLSKNPLASDQEVNKKEYKKGSKINKADLEN
INRFTLNAIVKSFSKDIQKKYDELKNYFQNEKKKLKEEHDAKIEILEKDDILPSGVVKLV
KVYIATKRKLKVGDKMAGRHGNKGIVSNIVREVDMPYLPSGQIVDIVLNPLGVPSRMNIG
QILESHLGLVGYRLGEQINEIFETKKGEWIKELRAKMIEIAGVAKLMDAKKALSKMSDEK
LLEYAKDWSNGVRFATPIFEGVKADEFAKLFEMAKIDSDGKTELYDGRTGSKIRERVNVG
CMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLR
EMLTVKSDDVEGRLSAYKALTRGENVPETGIPETFFVLTNELKSLALDVEVYDEDETNET
N
NT seq
4146 nt
NT seq
+upstream
nt +downstream
nt
atgttaaatagcttatactcaggaaatcgtcttagggttgacttctctaatgtcgttaag
gagatagacgttccgaacctactacaactacaaaaaaagagttttgataattttttaaat
ctaaataacaatcaaactgaaagcggtatcgaaaaagtttttaagtcgattttccctata
catgatccgcaaaatcgtttgactttagaatatgttagctcagaaattggaaaaccaaaa
tatacgatcagagagtgtatagaaagaggtcttacatactctgtaaatttaaaaatgaaa
atacgccttatagtccatgaaaaagatgataaaactggtgataaagttggcgtaaaagat
ataaaagagcaagaaatttttatacgtgaaattcctttgatgacagatagaatttcattt
attataaatggtgttgagcgtgttgttgtaaatcaacttcatagaagccctggcgttatc
tttaagcaagaagagagtgcgactgttgcaaataagctgatctacaccgctcaaataatt
ccggatcgcggatcttggttgcactttgaatatgatacaaaagatattttatatgttagg
ataaataagcgcagaaaagtgcctgtaactatcttgtttagggcattaggatataaaaaa
caagacattattaagctattttatccaatacaaaatttaacaattaaaaataataaattc
ttaactcttttcaacccagaagattatctaggaagagttgagtatgatataaaaaatgaa
gagggcgatgttcttcatcaagctggcaagcgcctaacaaagaaaaaagctgataaatta
atcgaagatggcgttaaatttgttgagtatccgatcgaggcgcttattggtagatatttg
gcaaatcctgtgataaatacagaaagtggcgaaattttatatgacacactatctgctctt
gatgagaataaacttgcgaaaattttagctgagcatgaaagcattgagatcattaataac
tctgctgccggtgttgacgacgctatcataaattcatttattgctgacaacgatatgctt
aaagttttaaaacaaactgagagcgttgatgacgaaaatgaccttgctgctataagaatt
tataaggttatgagaccaggagagccagttgtaaaagaggccgcaaagagttttgtaaat
gatatgctatttaaccctgagagatacgatttaacaaaagttggtcgtatgaaaatgaat
cataagctctcacttgatgtaccagaatatgttactttactaacaagtgaagatatcata
aaaactgcaaaatatcttataaaagttaaaaatggacaaggtcacattgatgaccgagat
caccttggcaaccgccgtataagatcaatcggcgagctacttgctagcgaacttcacctc
ggttttgtaaagatgcaaaaggctatccgcgataaatttacaagtttaagtaataatacc
gaagagattatgccatacgacctcattaatccaaaaatgattactgcaacaattatggaa
tttttcacaggtggacagttaagccagtttatggatcagacaaacccacttagcgaagtt
actcacaagcgccgtctatctgcgcttggcgagggtggcttagtaaaagagcgtgctggc
tttgaggtgcgtgacgttcacccaacccactacggcagaatttgtccggttgagactcca
gaaggtcaaaatattggtcttatcaatacgctttcaacctatgcaaaagtgaatgatctt
ggctttgttgaagctccttacaaaaaagttatagatggcaaagtgactgatgagatagtt
tatttaaccgcaactcaagaagagggcaatgttatagctccagcatcaactaaacttgat
gaaaatggacacatcgttgaggacttgattgaggttagaaaagatggcgagatgatgctt
gcccgtagagaagatgttactttgatcgacctttgttctggtatgatagctggtgttgcg
gcttcacttattccattcctagagcatgatgatgctaaccgtgctcttatgggttcaaac
atgcaacgtcaagcagtaccactacttcgctcaactgctcctattgttggaacaggtatg
gaaagcgttattgcaagagatgcgtgggaaagcgtaaaagcaagacgtagtggcgtggtt
gaaaaggttgataataaaaatatctttattcttggtgaagatgaagctggtccatatatc
gatcactactctttagagaaaaatttaagaacaaaccaaaatacgacattttcacaacat
ccgatcgttaaaaagggcgatgagatcgaggctaatcaaatcatagctgacggcccaagt
atggaaaagggtgagctagctatcggtaaaaatgcactaatagcatttatgccttggaat
ggctataactacgaggatgcgatcgttattagtgaaaaaatgatacgtgaagatgccttt
acaagcgttcatatctacgaaaaagagatcgaggctcgtgagctaaaagatggtgttgaa
gagataacaaaagatataccaaacgtcaaagaagaggaacttatgcaccttgatgaaagt
ggtattgttaaaatcggtacagagatcaagcctggcatgatccttgttggtaaagtatct
ccaaaaggcgaggttaaaccaactccggaagagaggctactacgtgctatctttggtgaa
aaagctggccacgtggtaaataaatcgctatatgcttcagcttcgatggaaggtgtggtt
gttgatgttaaaattttcaccaaaaaaggttatgaaaaagatagcagaacaaataaagct
tacgaagaggagaagactcttttagaaaaagaacatcatgatagactacttatgctagac
cgcgaagagatgctaaaagttacagcacttctttctaaaaatccactagcgagtgatcaa
gaggtaaataaaaaagagtataagaaaggctcaaagatcaataaggctgatcttgaaaat
ataaataggtttactctaaatgctatcgttaaaagcttttcaaaagatatccaaaagaaa
tatgacgagctaaaaaattacttccaaaacgaaaagaaaaagctcaaagaagagcacgat
gctaaaatagaaattttagaaaaagacgatattttaccaagcggcgttgtaaaacttgta
aaagtttatatagctacaaaacgcaaactaaaagttggcgataagatggctggacgtcac
ggaaacaaaggtatcgtttcgaatatagtaagagaagtcgatatgccttatcttccaagc
ggtcagatcgtagacattgtgctaaacccacttggtgttccaagccgtatgaatatcggt
caaattttagagagccaccttggtcttgttggctatcgcttaggcgagcagatcaatgaa
attttcgagaccaaaaaaggcgagtggataaaagagctaagagctaagatgatagaaata
gcaggcgttgccaagctaatggacgctaaaaaagctcttagtaagatgagtgacgagaag
cttcttgaatatgcaaaagattggagtaatggcgtaagatttgcaactccgatttttgaa
ggcgttaaggctgacgaatttgcaaaactatttgagatggcaaagatagatagcgacggc
aaaactgaactatatgacggacgcacaggctcaaagataagagaacgcgttaatgttggt
tgtatgtatatgctaaaacttcaccacttggttgatgaaaaagttcacgcaagaagtacc
ggaccatacagccttgttacacaacaaccagtcggtggtaaggcactatttggtggtcaa
aggtttggtgagatggaggtttgggcacttgaggcttatggtgctgctcatacactaaga
gagatgctaactgtaaaatcagacgatgttgagggaagactttctgcttacaaagcttta
acaagaggtgaaaacgttcctgagactggtatccctgagacgttctttgttctaacaaac
gagctaaaatcactagctcttgatgtagaagtatatgatgaggatgagacaaatgaaact
aactaa
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