KEGG   Chondrus crispus (carragheen): CHC_T00001866001
Entry
CHC_T00001866001  CDS       T02916                                 
Name
(RefSeq) hypothetical protein
  KO
K12827  splicing factor 3A subunit 3
Organism
ccp  Chondrus crispus (carragheen)
Pathway
ccp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ccp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CHC_T00001866001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ccp03041]
    CHC_T00001866001
Spliceosome [BR:ccp03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    CHC_T00001866001
 Complex B
    CHC_T00001866001
 Complex C
   U2 SnRNP specific factors
    CHC_T00001866001
SSDB
Motif
Pfam: SF3a60_Prp9_C SF3A3 SDE2_2C SF3a60_bindingd VCD DUF5390 Desulfoferrod_N
Other DBs
NCBI-GeneID: 17320567
NCBI-ProteinID: XP_005712851
UniProt: R7Q5E3
LinkDB
AA seq 475 aa
MRQTHEDIETLKHLASCALQSRTSIPISHPRLAPLSHPLPTLRSAEQLTQQLVHLAAEKT
LSLSSLYSNDDTLHRVNPDLSAPDPLSAFYAKLRQVRDAHRSVTFGVTQPRPVPTEGERD
LALLHASHHPVVFSGEEGNGRYLDFMRHYTAYLNVMSKAKQGKENQIEYYEYVDKAVTDF
DAVPPSVRSSHVYSRYLSDLLAYCVDFAQRAHPMDRVEEHMEVAEANTRKAMEEKLKDIS
HRMASPQAVLDELGADGVKKELVSLGQKCGGRPEDRAARLLKAARNGKFGERVILEGAVK
FAVEEVLAEEKRATVANVRKKLSLSYAEIEAERIADEAAGADEDEEMESTLYNPKDVPLG
WDGKPIPYWMYRLHGLNHEFKCEICGNATYKGPRAFERHFTDSQHVQGLKCLGIGYSKAF
LMITRIQDARMLNEKLTKQSEAAAFDEDAEMEFEDQEGNILNKKTYTDLIKQGLL
NT seq 1428 nt   +upstreamnt  +downstreamnt
atgcgtcaaacccacgaagatatcgaaaccctcaaacatctagcttcctgcgccctccag
tctcgaacctccatcccaatttcccacccccgtctcgccccgctttcccatccactccca
acgcttcgttccgccgaacagctcacccaacaacttgttcacctcgccgcggaaaagacc
ctatctttgtcttcgctgtactcaaatgacgatacactccaccgagtcaaccccgacctg
tcagcgcccgacccactctctgctttctacgcaaagctgcgccaagttcgcgacgctcat
cgttcggtcactttcggcgttacgcagccccgcccggttccgacagaaggcgagcgcgat
ttggctctgctccatgccagtcatcatccagttgtgttttctggcgaggagggcaacggg
cgctatcttgatttcatgcggcactacacagcctatctgaacgtcatgtccaaggctaag
caaggaaaggagaatcaaattgagtattacgaatacgttgacaaagctgtcactgacttt
gacgctgtcccgccatccgttcgaagctcccacgtctacagcagatatctttcagatctg
ttggcgtactgcgtggattttgcacagcgcgcgcatccgatggaccgtgtcgaggagcat
atggaggtggccgaagcaaacacgcgaaaagccatggaggaaaaattgaaagacatctcc
catagaatggcaagcccacaagcagtgctggacgagcttggggccgacggtgtgaagaag
gaactggtatccctcgggcagaagtgcgggggccgaccagaggatcgcgcggcgcgatta
ctgaaggcagccagaaacggaaagtttggagaacgggtgatacttgagggcgccgtgaag
tttgcggtggaggaagtgttggcagaagagaaacgagccactgtggcaaatgtgcgtaaa
aagctgagtttgagctatgcagaaattgaagcggaacgaattgctgatgaggctgcgggt
gctgatgaggacgaagaaatggagagcacgctctacaacccgaaggacgtgccactgggg
tgggacgggaaacccatcccatactggatgtataggttgcatgggcttaatcatgaattc
aaatgtgagatatgtggtaacgcgacctacaaaggtcctcgggctttcgagcggcatttc
actgactcgcaacacgtgcaggggttgaagtgtttagggattggatactccaaggcgttt
ctgatgatcacacgcattcaagatgccaggatgctaaatgaaaagctaaccaagcaaagc
gaggcagcggcatttgatgaggacgccgagatggaatttgaagatcaggagggaaacata
ctgaataagaagacatacacagaccttattaagcagggtctcttgtga

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