Chondrus crispus (carragheen): CHC_T00004465001
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Entry
CHC_T00004465001 CDS
T02916
Name
(RefSeq) hypothetical protein
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ccp
Chondrus crispus (carragheen)
Pathway
ccp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHC_T00004465001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccp03019
]
CHC_T00004465001
Messenger RNA biogenesis [BR:
ccp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CHC_T00004465001
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
CHC_T00004465001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
DUF3819
CNOT1_TTP_bind
ARM_Cnot1
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
17323575
NCBI-ProteinID:
XP_005715868
UniProt:
R7QDA9
LinkDB
All DBs
AA seq
2244 aa
AA seq
DB search
MVSLSRLLAAAVETPPELEASAAPALLPTRDCLLPPVLPPGAVPPRLRAALGTESSTVTQ
FSSKPQSSTETSGAALSAPSLARLSKPPLPLQRLLEDLGPEATASRNMSSLAHTLVHFGR
PSEAAVASALLFLATAGPPTEAAAVDSHMFHLFAMFCGDSENPSVGTNVQHAVAAVSSSP
SEWRVDVLVHAVVAVAAQYQSPLDWRLVIRSLDADGLEKQLTQAAFVEIANAHMTGTGGS
LIPGDIILDDWRHPASQICMISHALASHKYINWDILEAFEVATKEDMASPLSRIAVVEKL
IELDARDLLQYALRQDPNLVLLSLTCSKPRRNVALQHKLTVTLLAPLIAAYPKSEKTLRQ
MWDVTPTLVESGLISMWKKDPTMLHLVYMIASDLGILDDLLRAVNSVVFSFELALLAYKE
GAVNLEKWLTDLLLARGMSIVSTITTQLAAKLQIKDGQEAAQMPLDAVRLIFRCFVTVLR
SDSNNTQTQDIMEGNRVETSSHPRESRDGISEAASTAAALLLPASVGPGRAPSGFPKAIE
KEASSYFENLYMRSLPTGHAVELLRNYKLSNSVHDRHVFLCAMHTLFDEYRFFKKYPDRE
LEITGRLFGSIVNESLLEGKLQGLALTCVIDALGTTEPSPAPIGRLATFGLYALERYVSR
LKEWPSYCRKILKLPRLAEVKPAIAEAAKRTLEMYHAPPPVTSVRDPSVDADTVRALVSS
PVLSPQRTPVKESLLASSVIKPSPSITSNMDGSLAMSPQNLMALLGITAEEANKIVAPDD
AVQDKIGFIFNNLSETTMEVKVKEMLGLLDAEYIPFFSVYVVVKRASIESNFHRLYLSML
EGMEPEAPTLFKVVYETMYKRVKVLLASDAIVTSTSERKVLKSLGSWIGALTLGRNKPVL
QRDLDLKELLMDAYSRGRLTAIFPFVSKVLEASRGSRVFKTTNPWIRGILSLMKEIYSVL
DLKLGMRFELRLLCKSLNVDVNKVTASELLRNRPAPDKNNNQDFNTKKPASASPLRSLPS
PATSPSPELRRAYGQVGTTGRPGIPVFSLADAQSSTSANRSSSQLQRSSLHTTGGVPSTS
VQPSGISSRQSGSISASDSTVIPNLANYITISPSLVVFQQNPSLKRLLPLAIDRAIREII
QPVVERSCAIAFLTTKELTLKDFANEPDLGKVRKAALQMVQQLAGSLALVTSKEPLRVSM
GNQLRTMLNPVVPEQNLIEQTSQVICAANLEVGCAIIERHAKEKAARDLNEKIAPAIAAR
RPQHSSYSHRIPLGPEVLRVYDEFGRLPRMGATPSQHPSTAQTPRPQPVRPAQPNTAPSH
LSMPSSHRADGGNIALPDSRANGSVPDEKFSDAPSAIAYPGTRPTGPSNSVADTNGQGVT
TGRRTASVSVPAKEKRDSFTLVGTSLPVMAGFSELSNALTAAAGIGNAGSATHLHGTHAA
GLQGMSLTGEPESLSIQQVLERFNGIYPQLTGRILEAVAAAGNKAVALGDLSLDHEIHQL
WVQIPAAVKRSETADEAGMAVAQKVFKHLYEGDSTLYREVHVLILEGLRESCRRLSKELV
SWLAYSEERKKLHRECIVALLKPGSLLNITNYDELLAKTIDNGRNKNALEFACFLVKRAV
IDEPLATAAELYLTLETMSKVGRRDNPSLEEAPDGLVQLVDTSRKVAHQHSAANSTTGSA
NDNYSNSSKHLVLHQNQQQKEAIATDPVGMREAIAMCLTDWQRILESDASRRPVSERVVV
TFLGHVRTNFMSTDELRKRFSRITIELVCSVTARALRSPASGVPGDLASAPYSAVDAVVP
FIVALCQSDSVNVSDTISREVYTLTQFLTAVVKDLLKTSVGADLRPHFRLLSGLIADLAA
RTSCKMANPQVHAAIVGALSACSPLVIPGFSFSWLQLSSNKEVMPRLLMDPTSHGGNMYL
HLLNTMLRFLSEYLKDPLDSLSEGIRTLYKGVLRVFLVLLHDFPEFLCDYHMAIVDVIPH
CCVQLRNIVLSSFPKSMRLPDPFLPELKVDQLPAMASKPRILTDFKKSLDEGGLLTVLEN
YLRDPGLRRGSKPPLLKSYFVMTDGESGETRYSIPTIGAFVLYVGQVAIGRLSPGTTAVM
DGPVTDWIQSLIQELDPEGQYHLFNAIVNQIRYPNCHTLYYSRLILYLFLGSSEDSVKEQ
ITRVLVERLIASRPHPWGLLVTFVELVKNSVYNFWRQDFVRCAPEIEELFESVAKVCIGP
AIQTQNSRSAVNSAFDTLSMPKVN
NT seq
6735 nt
NT seq
+upstream
nt +downstream
nt
atggtatctttgtcccgtctgctcgctgctgctgtagagacacctcccgagctggaggct
tcggccgccccagcgttgctgccgactagggattgtctcttgcctccagtgcttccaccg
ggagctgtgccgccacgactgcgtgctgcgcttggcactgaatccagcacagttacgcag
ttttcatctaaacctcagtcatcgaccgaaacgtccggtgcagccttgtctgcaccgtct
ctcgcccgtctttccaagcccccacttcccttacaacgtcttctcgaggacttggggcca
gaagctacggcttcgcgcaatatgtcttcccttgcccacactcttgttcacttcggccgg
ccgtcagaagccgctgtcgcttcggccttgctattccttgccactgcagggccacctaca
gaagcggccgccgtggatagccatatgtttcaccttttcgcaatgttttgtggcgactcg
gagaacccttcagtgggcacaaatgttcaacatgccgtcgcagcggtctcttcgtctcca
tcagaatggcgagttgatgtgttagtacacgctgtagtggcagtcgccgcccagtaccag
tcgcctctggattggcgccttgtaattcgatctttggatgcagatggattggaaaagcaa
ctaacacaagctgctttcgtggaaattgccaatgcacatatgactggcacgggcggctcg
ctaattccaggagatatcattttggatgactggagacatccggcttctcaaatatgtatg
atatcccatgcgcttgcatcgcacaaatacatcaactgggatattctcgaggcttttgag
gttgccacgaaggaggacatggcgagcccattatcaaggattgcagttgttgaaaagcta
atcgagctcgatgctcgtgatttgcttcagtacgcacttcggcaggatccgaaccttgtt
ctattgtcgctgacatgctcaaaaccgcgtcgaaacgtagcgttgcaacacaaactcaca
gtgactttacttgctcctttaatcgcggcctacccaaagagcgaaaaaacgttgcggcaa
atgtgggacgtgaccccaactctcgtcgaatcaggacttatttcaatgtggaagaaggac
cctacaatgctgcatctggtctacatgattgcgtccgatctaggaatcctggatgatttg
ttgcgggccgtgaactcagtcgtcttttcttttgaactagcactccttgcgtacaaagaa
ggcgcggtgaacttggaaaagtggctcacagatttgcttctggcgcgtggtatgagcata
gtctccacaattacaactcagctagcggctaaactacagatcaaagatggccaggaggcc
gcccaaatgcctcttgatgccgtccgactcatttttcgctgctttgtgaccgtcctgcgt
agcgatagcaacaacactcagacgcaggacatcatggaagggaaccgtgtggagacgtcc
tctcatcctcgtgagtctagagatggtatttcagaggcagcatccactgccgctgctttg
cttctgcctgcgtcggtggggccaggcagggcacccagtggattcccgaaggcgattgaa
aaggaagcttcttcgtactttgagaatctttacatgagaagcttaccgacagggcatgcg
gtggagcttttgagaaattacaagctgtcaaactctgtacatgacagacacgtctttttg
tgtgcgatgcatacattgtttgatgaataccgtttttttaagaagtatcccgaccgtgaa
ttggaaatcaccgggcgtttgttcggttccatcgtgaacgagtctcttcttgaaggaaaa
ttgcagggattagcactcacgtgcgtcattgacgctttaggaactacagaaccgagtcct
gcacccatagggcggctggctacgtttggattatacgcgctagagagatatgtatcccgt
cttaaggaatggccgtcctactgccggaagattttgaagttgccgaggctggcagaggtg
aagccagctattgcagaggctgcgaagaggacgcttgaaatgtaccatgctccacctccg
gtgacgtcagtacgtgatccatcagtcgatgcagacacagtgcgcgctcttgtctcatcc
cccgttctgtctcctcaaagaacgcctgtgaaggagtcgctgctagcttcgtcagtaatt
aagccgtccccttcgatcacgagcaatatggatggctcactggcaatgtctccgcaaaat
ctcatggcgcttcttggcattacagccgaggaggccaacaaaattgtggctcctgacgat
gctgtgcaagacaagatcggatttattttcaacaacctttcggagactaccatggaggtc
aaggtgaaggaaatgctagggctccttgatgccgaatacataccttttttttctgtctac
gttgttgtgaagagggcatcaatagagtcaaactttcatcggctatatctttcaatgctg
gaaggaatggagccagaagcaccgacgttattcaaggtggtttacgagacaatgtacaag
agagtgaaggtcctgttggcatctgatgccatcgtgactagcacttcagaacgcaaggtc
ctcaagagtctaggaagttggattggcgcattaacgctgggaaggaacaaaccagtgctg
cagagagatttagatctcaaagagcttctgatggatgcctattccagaggccgcctcact
gcaatctttcctttcgtttcaaaggttttagaggcttctcgaggatcaagagtcttcaag
actactaatccatggattagaggcatccttagtcttatgaaagagatatattctgtcctt
gatttgaagctcgggatgcggttcgaacttcgattgctatgcaagagtttgaacgttgat
gtgaacaaggtgacagcttcagagttgttgagaaatcgcccagcaccggacaagaataac
aaccaggacttcaacacaaaaaagccggcaagcgcgtcaccgcttcgttcgctaccttcc
cccgctacttctccctctccggagcttcgtcgggcttatggccaggttggcaccaccggg
agaccaggaatccctgtattttctttggcggatgcgcagtcaagcacttcggcaaatcgc
agctccagtcaactccagcgcagttcgctccacactacgggtggcgttccgagtacatca
gttcaaccctctgggatatcctcaagacagtctggttcaatttctgcatcagacagcacg
gtgattcctaatctcgcgaactacattacgattagcccatcgctagtcgtgttccagcag
aatccaagtctgaagcgcttgctccctctagctatagaccgggcaatccgagagataatt
cagccagttgtcgagagaagctgtgcgatcgcttttctgacaacgaaagagttaactctt
aaggactttgccaacgaacctgatcttgggaaagtgaggaaagctgcactgcagatggtt
caacaactggccggttcattggctctagtgacatcgaaggaaccccttcgagtttccatg
gggaatcaactccgcacaatgctcaacccagtggtgccggagcaaaatcttatcgaacaa
acatcacaggtcatatgcgcggcgaaccttgaagttggttgtgctattattgaaagacac
gccaaagagaaggccgcacgagacctgaatgaaaagattgcgcccgctattgcagctcgt
cgtccgcagcattcctcatacagtcatcggataccattggggccggaagttcttcgagtt
tacgatgaatttgggcgcttgcctcgaatgggtgccaccccctcccagcatccgagcaca
gcgcagactccccgtccacagccagtgcgaccggcgcagcccaacacagctccttctcat
ctctcaatgccatcaagtcaccgcgcggatggtgggaatattgcgttgcctgatagtcga
gccaatggttcagtaccagacgagaagttttctgacgctcccagtgcaatcgcttatcct
ggaacaagaccaacgggaccttccaactcagtagcggataccaacggccaaggagtgacg
acaggaaggagaactgcctcggtctcggttccggcgaaggagaagcgcgactccttcact
ttagttgggacttcccttccggtcatggccggcttctcagagctgtccaatgcactgaca
gctgctgcaggaatagggaatgccggaagtgcaacacacttacatggcacgcatgcggct
ggcttgcaaggtatgtctctaactggggaacccgaatctctttccatccaacaggtgctt
gagcgattcaatggaatttatcctcaattgactggtcgcatattggaggctgtggctgcg
gccggaaacaaagcggtggcattgggggacctttccttggatcatgaaattcaccagtta
tgggttcaaattcctgcagccgtcaagagatcagaaacagcagacgaggcgggcatggct
gtcgcccagaaggtgtttaaacatctctacgaaggggattcgacactttatcgtgaagtg
catgtccttattttggaaggccttcgggagagctgccgccgtctatcgaaggagcttgtt
tcatggcttgcatattcggaagaacgcaagaagttgcatagggaatgcattgttgctctg
ctcaagccaggttcactgcttaatatcacaaactacgacgagcttctcgcaaagacgatt
gacaacgggagaaacaagaatgcgttggagtttgcatgctttctggttaagcgtgctgtc
attgacgaacctctagcgacggcagcagaactgtacttgacgcttgagactatgagcaaa
gtcggccgccgtgacaacccaagccttgaggaagcccctgacggcctcgttcaattggtc
gatactagtcggaaagtagcacatcagcattctgcggcaaattctacaacggggtctgcc
aacgacaattactcgaattcctcgaagcatctcgtacttcatcaaaaccaacagcaaaag
gaagctatcgctacagatcccgtggggatgagggaggcgattgccatgtgcttgacagat
tggcagcgaattttggagtctgatgcctctcgtcggccggtttcggaacgtgttgtggtt
acatttcttggacacgtgcgaacgaatttcatgagcactgatgaattacgcaagaggttt
agtagaatcactattgagctcgtctgttctgtaacggcccgtgctctccgctctcctgcg
tctggcgttcctggagatttggcctccgctccatattctgcggtcgacgctgttgtccct
tttatagtcgctttatgccagtcagactcagttaatgtatcagatactatttctcgcgag
gtctacaccttgactcagtttttaacagctgttgtgaaagaccttctgaagacttcagtt
ggagcagatctccgtccacatttcagacttctgtcggggctcatagcagaccttgcagca
agaactagctgcaaaatggccaacccccaggttcatgctgcaatcgttggggcgttgagt
gcgtgctccccgttagtgatccctggtttctccttttcatggctgcaactttcttctaac
aaagaagtaatgccgaggctattaatggatcctacttcccatggtggcaacatgtatctt
cacttgctcaacaccatgttacggtttttgtcggaatatttgaaggatcctctagactct
ctttctgaagggatccgaaccttgtacaagggcgttcttcgtgtttttcttgttctccta
cacgactttccagaattcctttgtgattatcacatggcgattgttgacgtgattcctcac
tgctgcgtacagcttcgaaacattgtcttatcgtcatttccgaagagcatgcgtctgcca
gatccatttctcccagagcttaaggtggatcagcttcctgcgatggcgtcaaagccgcgg
attttgacagatttcaagaaaagtctggacgagggcgggcttttaacagtattggagaac
taccttcgagatcctggattacgaagagggtctaagccgcctctcctgaagtcgtacttc
gtaatgacagatggcgaatctggtgaaacaaggtatagcatccctacaatcggtgcattt
gtcttgtatgtagggcaggtcgcaatcgggcgcttgtcaccagggactactgctgtaatg
gatggaccagtaacggactggatacaatcgctcatacaagaacttgatcctgagggccag
tatcacttgttcaatgcaattgtgaatcagattcggtacccaaattgtcacacactatac
tacagccggttgattttgtacttattcctcgggtcgagcgaagactctgtgaaagaacag
atcactcgagttcttgtggaacgattaattgctagtcgcccgcatccgtggggacttctt
gttacctttgttgagcttgtgaagaattcagtgtacaacttttggagacaagatttcgtc
agatgcgccccagaaattgaagaacttttcgagagtgtagcgaaggtgtgtatcgggccc
gcgattcaaactcaaaatagtcgatcagcagtcaacagtgcattcgacaccttgtcaatg
ccaaaagtgaattga
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integrated database retrieval system
