Colias croceus (clouded yellow): 123705509
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Entry
123705509 CDS
T08651
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ccrc
Colias croceus (clouded yellow)
Pathway
ccrc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccrc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123705509
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccrc03019
]
123705509
Messenger RNA biogenesis [BR:
ccrc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123705509
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
123705509
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
NOT1_connector
CNOT1_CAF1_bind
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
123705509
NCBI-ProteinID:
XP_045510260
LinkDB
All DBs
Position
Z:8893577..8928383
Genome browser
AA seq
2405 aa
AA seq
DB search
MNLDPLTFSLLQINNLVVNLNKKNFKQTSQELTQIVNTHGLEAENQLLRSLFTEAVKASW
DNDRTGTISFGIHASLLAQILASLLNHPAKSTVVCRAIDNPARSLQKTLKPTNTLLTRLA
RLLKLTTAQDVAFSLVLRRHSSKPEIATFAKQHLKKRFLDLVQCYLDAERGHQAERAGLQ
ECSPEVLQTLLTSLTYDNFRLATVTKDLFLKRLRVDFPREVVPIVLAPLLYPDDTKTPLE
EMTTGSDMATTMMENSLAEVIRDLGYAFTASVEECKTHMLNFGAREPTAIDVARIISLMV
RYHATIPETPQIQNPGNFWVNHEAKKDANHGHGEAWNAEVFVQTLKELASNLNWKEVILQ
LDHPEFIVPDRQGLSLLFTILRLGLQSAGYPANIFPVEYLCRRWTNLEGQMSLITNILKY
PDVFSLADYPFHPVSIDLLKSPPETDNKEVATWRCLYLVELLLYASERGYYLQVHELFKF
PLQHCPDILLLALLQISPPITVFRQELLTTLIPIFLGNHPNSGIILQHAWHTQNPNIKPI
IMHAMADWYMRGDCDQSKLSRILDVAQDLKALSLLLNVQSFPFIIDLACLASRREYLKLD
KWLTDKIRDHGESFVTAMVKFLQRRCPPVIGKVPEEQLPKAAQLPPETVGTMLACLQLCV
PNVQQELQEAIYALITNCQTLILSKTRPNITGIPRAHTRVIETPFNPAGLGGQLFTPHVD
SIASLTPNVANLTLGAPGNTAFAMPGTLGPLVTAPGSPSRLIGAGPNSPFPMIPMQHGAN
VATMSALARMPPGPAMDKHRIPDPIHFPEIMHNVSKEIEDEANGYFQRIYNHPPHPTLSI
DEVLDMLKKFQDSPNKREREVFSCMLRNLFEEYKFFPQYPDKELHITAQLFGGIIEKGLV
PSYVSLGLALRFVLDALRKPEGSKMYYFGIAALDRFKSRLKDYHKYCEHVRAIPHFSEFP
PHLIEYIEYGLQSQEPPTKPQGAVLPATLASMLSQTAVVTVAAPYRTVVPPCISVLSKNA
NCAAGGIGSRPSIANATNIDTLLTATDRDDKINTPPEAIQDKTAFIFNNLSQLNLQAKCD
ELKEIITDEYFPWLAQYLVMKRASIELNFHVLYSNFLDVLKLREINKLVTKETYRNIRVL
LRSDKGIANFSDRSLLKNLGHWLGMLTLARNLPILQVDLDLKALLLEAYHKGQQELLYVV
PFVAKVLESCAKSVVFKPPNPWSMALMNVLAELHQEPDLKLNLKFEIEVLCKNLCLDIQD
LKPTLYLKDPDKIRTIEFQLSQPKQNKEQQQQQQPPPPQPQPNVMTINQTIIQAPQIQMI
PPQTPMIPTEDISAAAPTPTNGLVNDPTLMGVIGIPEPRFNYLDVNVSSTSAFGQKISFN
PHILLFQSYPHLKQFVKPAIERSIQEWIHPVVDRSIKYALTTCEQIIRKDFAFDPDEVRM
RTCAHHMMRNLTAGMAMITCREQIINTITTNLKAAFITALLPTTPQQKDIIESAAAVLAA
ENMELACAFIQKTAVEKALPELDKRLLNDYELRKLARQEGRRYYDPIVLSYQTERIPERV
RLRVGGPTESQIVVYEEFACNIPGFVPVRDAGMFMPKPSSQEQIPQMTYSQVINPTQQMY
GTDEMGALISAAEMFLSNALSVPSFAVQATNMHTLLECLIMARRNRDFVSGYTLLQRAVE
GLLDGHIVQPGASNEHVEMMTRYRDIHLRVLKLLEDARVYGHAWTTKQITCCVTECRDEL
KYNLEAIDCLVRNHLVNLPQYDLALAHLMDSGNNYVAVAFAMQLVQLYLVDDRNNMYANE
SDLYHTTETLVRMMSHSRNPPPEGLASLIEAIRINQDPSTYLGERSPLGPTSHIHTGIMQ
VRNREYDDPPGLQEKTENLLREWRNVLLSPLTEIEIAQNFNIYVHRMNMNGILKSDDMIT
RFFRIATQMCVENVYQLLTEDRLNPPPVPPKREKYYAMCDSFIKLVSLLIKNTADAGNPT
PKLNLLNKILGIIAGCLLQDHEEHGANFQQLPYHRLLLILFLDMNMAEPVLESMNYQVLT
AFCHTFRIIRPSLAPGFCYAWLELVAHRSFINRVLAVTPQQKVLLFQGWGMYSTLLIDLF
KFLDPFLRNTELASPVMMLYKGTLKVLLVLLHDFPEFLCDYHYGFCDEIPPNCIQMRNLI
LSAFPRNMRLPDPFTPNLKVDLLAEINLPPRAVINYANLIPSSQFKKDLDAYLKARAPVT
FLSELRSNMQIVNEPGRRYNSQLMNAVVLYVGTQAIAHIRAKGQTPNMSTIAHSAHMDIF
QNFTVDFDYEGRYLFLNAIANQLRYPNSHTHYFSCCLLYLFAEANSEAVQEQITRMLLER
LIVNRPHPWGLLITFIELIKNPIYKFWSHEFVHCAPEIEKLFASVARSCIADKTGAGGGE
RDLVE
NT seq
7218 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggaccctttaacgtttagcttattacaaatcaataatctcgttgttaattta
aataagaagaactttaagcagacaagtcaagagttaacgcagattgtcaacactcatggc
ttggaagctgaaaatcaactgctgaggtcattgttcactgaagctgtgaaggcatcgtgg
gacaacgatcgcacggggaccattagcttcggcatccacgcatctcttcttgctcagatt
cttgcctctctcctcaaccatccagccaaatccacagttgtatgtcgggctattgataac
cctgctcggtctttgcaaaagactcttaaaccaacaaacacattacttactcgccttgca
aggctactaaaattaacgactgctcaagatgtcgctttctcactggtattaagaagacac
tcttcgaagcctgagatagcaacatttgcaaaacaacatctcaaaaaacgttttttggat
ctagtacagtgttatctcgacgcagagcgtggacaccaagcggagcgtgcaggtcttcag
gaatgcagccctgaagttttgcaaactctattgaccagtctcacttatgataattttaga
ttagcaacagtcacaaaggatttatttcttaaacgattacgagtagactttccgcgagaa
gtagttcctattgtattagctcctctcctatatcccgacgatacaaagacgcctcttgag
gaaatgacaacaggcagtgacatggccacaacgatgatggaaaattcactggccgaagtt
attcgtgatctcggatatgcatttacagcctcagtggaagaatgcaaaacgcacatgttg
aactttggtgcacgagaacctacagctattgatgtggcaagaatcatatcacttatggtg
agatatcatgctactattccagaaactccacaaattcaaaacccaggtaatttctgggtg
aaccacgaagccaaaaaagatgctaatcatggacatggcgaagcatggaatgcagaagtg
tttgtgcagacattaaaagagcttgcttctaacttaaattggaaagaagtaattcttcaa
ctagatcaccccgaatttattgttcccgacaggcaaggtttaagcttgctttttacaatt
ttacgcttgggtttacaaagcgcaggatacccagcgaatatctttccagtagaatatctt
tgtcgacgatggacaaatttagaaggacagatgagtctaatcacaaatattctcaaatac
cctgatgtgttcagccttgctgattatcctttccatccagtgtcaatcgatttactgaag
tcacctccagaaactgacaacaaagaagtagcaacatggcgttgtctctatttagttgaa
ctgcttttgtatgcctctgagcgtggctactatttacaagtacatgaactttttaagttt
ccattgcaacattgtcctgatatcttgctcttggcattgctacagatcagtccacctatc
actgttttcagacaagagttactgactacactaataccgatatttttgggaaatcatcca
aattcaggcatcatattacaacatgcatggcatacccaaaatccaaatataaaaccaatt
ataatgcacgctatggcagactggtacatgcgtggtgattgtgatcagtcaaaactatca
agaatattggatgttgctcaggacctcaaggcactttcgctgctactgaatgtccagtct
ttcccatttatcattgatctggcatgcttagcatctcggagagaatatttaaaactcgat
aaatggcttacagacaaaatacgagaccatggcgagtcttttgttactgctatggttaaa
tttctacaacgaagatgtccaccagtcattggcaaagtacccgaagaacaacttcctaag
gcagctcaactaccgccagaaacagtcggcactatgttagcatgcctacaactttgcgta
cctaatgttcaacaagaattacaggaagcaatttatgcacttatcacaaattgtcaaaca
ttaatactgagtaaaactagaccaaatattacaggaataccaagagctcacacaagagta
atagaaacacccttcaaccctgccggtttaggcgggcagcttttcactccgcatgtcgat
tctattgcaagtttaactcctaatgtagcaaatctgactcttggggctcccggtaatacg
gcatttgcaatgcctggcacccttggacctttggtgactgctccagggtcaccgtctcgt
ctcattggtgcgggtccgaatagccccttccctatgataccgatgcaacatggtgctaat
gtggcaactatgagtgctttagcccggatgccacctgggccagcaatggataaacaccgt
atacccgatccaatacattttcctgaaattatgcataatgtatcgaaggaaatcgaagat
gaggctaatgggtattttcaaaggatctataatcatcccccgcatccaactctgtccatt
gatgaagtgcttgatatgttgaagaaatttcaagattcgcctaataaaagagaacgcgaa
gtattctcttgtatgttgcgaaatttatttgaagaatacaagttctttccacagtaccct
gataaggaattgcatataactgcgcaactatttggtggtatcatcgaaaagggcctagtt
ccaagttacgtgtcgctcgggctagctttgagattcgtcttagacgctttaaggaaaccg
gagggttctaaaatgtactactttggcatagctgctttggacaggtttaaatccaggctt
aaagattatcataaatattgtgaacacgtaagagccatcccacattttagtgaattccct
cctcacttgattgaatacatcgaatatggcttgcagagtcaagagccgccaactaaacca
caaggagcggtgttaccagctactttagcttctatgttgagccaaactgctgtcgtaact
gttgctgcaccatacaggacggttgttccaccttgcatatcagtgttatccaagaatgcc
aactgtgctgccggtggaataggcagtaggccatccattgcaaacgcaacaaacatcgat
acattattgactgctacagacagagacgacaagataaatacacctccagaggctattcaa
gataaaactgctttcattttcaataacctcagccagcttaatttacaagcgaaatgtgat
gaattgaaagaaataataacagacgaatattttccttggcttgcgcaatatttagtcatg
aaaagagcgtcaattgaattaaatttccacgttttatattcaaatttcctagatgtactc
aaattaagggaaattaataaactggtgacaaaagaaacataccggaatatcagagtatta
ttgcgttctgacaaaggcatagctaacttttccgaccgttctttgctcaagaatcttggt
cattggttaggcatgcttaccttggcgcgtaatttacccattcttcaagtcgatctagac
ctcaaagcacttctacttgaagcttatcacaaaggccaacaagagttattgtatgtggtg
ccgtttgtagccaaggtcttagaatcctgcgctaagagcgttgttttcaaaccgcccaat
ccatggtcgatggctctaatgaatgttctggctgaattacatcaggaaccagatttgaaa
cttaatttgaagtttgaaatagaagtactttgtaaaaacctctgtcttgacatacaagac
ttgaagcctactctgtacctaaaagatccagacaaaataagaacaatagagttccagctc
tcacaacccaaacaaaataaagagcaacaacaacagcaacagccaccgccgcctcaaccg
cagcccaatgttatgaccattaatcaaacgataattcaagctccgcaaatacagatgata
ccaccacagacgcctatgattcctacagaggacatttcagctgccgcgccaactccaact
aacggcttagtaaatgatcctaccctaatgggtgtaataggaatcccagaacccagattt
aactacttggatgttaatgtatcttcaacttcagcctttgggcagaagatttcgttcaat
ccgcatatattgcttttccaaagctatccgcatttgaagcaatttgtgaaaccagccatc
gaacgatccatacaagaatggattcaccctgttgtcgaccgatcgatcaaatacgctctg
acgacatgcgaacaaataataagaaaagattttgctttcgatcccgatgaagtacgaatg
cgtacatgtgcacaccacatgatgcgtaacttgaccgcaggcatggcgatgattacttgc
cgggagcaaatcataaatacgatcaccaccaatttgaaagctgcatttattactgctcta
ttaccgactacaccacagcagaaggacataatcgaaagcgccgcagccgttctcgcagct
gagaacatggagttagcgtgcgcattcatacagaaaaccgccgttgaaaaggcgttacca
gaactcgacaaacgattgctcaatgactatgaattgaggaaactggcgagacaagaaggc
aggcgatactacgatccgatcgtcttgagctaccaaactgagagaatcccagaaagagtc
cgcttgcgtgtaggcggtccgacagaatcacaaattgttgtatacgaagaattcgcgtgt
aacatccccggctttgtgccggtgcgtgacgccggtatgttcatgccgaagccctcatcc
caagagcagattccgcagatgacttacagccaagtcattaatccgactcagcagatgtac
ggcaccgacgaaatgggtgcgctgatttcggcagcggaaatgttcctgagcaatgccctc
tcggttccctcttttgctgtgcaggccacaaacatgcacacccttcttgagtgtctcatc
atggcaagaaggaatcgtgactttgtttctggatatacacttcttcagagggccgtagag
gggcttctagacggtcacatagttcaaccaggcgcaagtaacgagcacgtcgagatgatg
actcgctaccgtgatattcaccttcgagtcctgaagcttctagaagacgccagggtttac
gggcacgcgtggactacgaaacagataacctgctgcgtcacagaatgtcgcgacgagctc
aaatacaacctggaagcgatagattgtcttgtgagaaatcatcttgttaatctacctcaa
tacgatcttgcgctcgcgcacctcatggacagtgggaacaattacgtggctgtagcgttt
gcgatgcaactcgtacagctgtacctcgtggacgacaggaacaacatgtacgcgaacgag
tcggacctgtaccacacgacggagacgctggtgcgcatgatgtcgcactcccgcaacccg
ccgccggagggactcgcgtctctcattgaagccatcagaattaaccaggacccgagcacg
tacttgggtgagcggtcgccgctcggccccacttctcatattcacaccggaattatgcaa
gtgcgaaaccgtgaatacgatgacccacctggcctacaagagaaaactgagaatctatta
cgcgaatggcgcaacgttttactgagcccactcactgaaattgaaatagcacaaaatttc
aacatatatgtgcatcgcatgaatatgaatggaatactcaaatcggacgacatgatcaca
agattctttagaattgcgactcaaatgtgtgtcgaaaatgtttaccagctgttgactgag
gacagactgaaccctccgcctgtgcctccaaagagggagaaatactacgcaatgtgtgac
tccttcataaaattggtgtctttgctaatcaagaatacggcagatgcagggaatccaaca
ccaaagttgaatttgttgaacaagatccttggaatcatcgctggttgcttgttgcaagac
catgaagagcatggagcgaatttccaacagctcccgtaccacagactgctactgatcctc
ttcctcgacatgaacatggctgaacccgttttagaatctatgaactatcaggttctcacc
gcattctgccacacgttccgcatcatccggccgagcctggcgccgggcttctgctacgcg
tggctcgagctggtcgcgcaccgatcgttcatcaaccgcgtgctcgccgtcacgccgcaa
cagaaggttttacttttccagggctggggaatgtattcgacactcctcattgatctgttc
aaattcttagatccgttcttacgcaatacagagctcgcctccccggtaatgatgctctac
aagggcacactgaaagtgctgctcgtgttgcttcacgatttcccggaattcctttgcgat
taccattacgggttctgcgacgagataccgccgaactgtattcagatgagaaacctgatt
ctctccgccttcccgcgtaacatgagactgcccgacccgttcaccccgaacctgaaagta
gatctgttggctgagatcaatctcccgccccgcgccgtcatcaactacgcgaacctcatc
ccgtcgtcgcagttcaagaaggacctggacgcgtacctcaaggcgagagctccggtcact
tttctctcagaactgagaagcaatatgcagatcgtgaacgagccgggccgcagatacaac
agccagctgatgaacgccgtggtgctgtacgtgggcacgcaggccatcgctcacatcagg
gcgaagggccagacgccgaacatgtccactatagctcactccgcgcacatggacatcttc
cagaacttcactgttgacttcgattatgaggggcgctacctgttcctgaacgcgatcgcg
aaccagcttcggtacccgaacagccacacacactacttcagctgctgcctgctctacctg
ttcgcggaggccaactcggaggcggtgcaggagcagatcacaaggatgctgctcgagaga
ctcatcgtcaaccgaccgcacccatggggcctcctcatcaccttcatcgaactaatcaag
aaccccatatataagttttggtcgcacgaattcgtccactgtgcgcctgaaatcgagaag
ttgttcgcgtctgtggcgcgctcctgcatcgccgacaagacgggtgccggcgggggagaa
cgggatctagttgagtag
DBGET
integrated database retrieval system
