Caulobacter vibrioides NA1000: CCNA_02003
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Entry
CCNA_02003 CDS
T00841
Symbol
dnaE
Name
(RefSeq) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ccs
Caulobacter vibrioides NA1000
Pathway
ccs03030
DNA replication
ccs03430
Mismatch repair
ccs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ccs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CCNA_02003 (dnaE)
03430 Mismatch repair
CCNA_02003 (dnaE)
03440 Homologous recombination
CCNA_02003 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccs03032
]
CCNA_02003 (dnaE)
03400 DNA repair and recombination proteins [BR:
ccs03400
]
CCNA_02003 (dnaE)
Enzymes [BR:
ccs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CCNA_02003 (dnaE)
DNA replication proteins [BR:
ccs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CCNA_02003 (dnaE)
DNA repair and recombination proteins [BR:
ccs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CCNA_02003 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-GeneID:
7333331
NCBI-ProteinID:
YP_002517376
UniProt:
B8GWS6
LinkDB
All DBs
Position
complement(2148907..2152338)
Genome browser
AA seq
1143 aa
AA seq
DB search
MSDAEGQGFVHLRVRSAYSLLEGAIKADQIGKLAAEAKMPAAGLADRANLFGALEYSSYA
KDAGVQPIIGCAIPVVGIGGGPTERWARAPTLMLLAQNERGYLNLSELSSIAYLDSAELP
EPVVPWAKVAEHSEGLILLSGGTDGPVDALFAAGKTAEASAALAEMHRVFGDRFYVELQR
HGLPRQAAAEPGLVNWAYDHDVPLVATNDVYFAKPGFYDAHDALLCISDGAFVGQDERRR
VTPEHWFKPAEEMRKLFADLPEACDNTLDIARRCAFMVHKRDPILPSFPTGDGRNEAEEL
EHQAREGLKMRLEGLTLSAPEEEYWKRLDFELGIIKKMGFPGYFLIVSDFIKWGKAHGIP
VGPGRGSGAGSLVAWVLTITDLDPLRFGLLFERFLNPERVSMPDFDVDFCQERREEVISY
VQEKYGRDRVAQIITFGSLQARAVLRDVGRVMQLPLGLVDRLCKMVPNNPAAPVTLAQAI
DLEPRLKQAKKEDANVSACLDVALQLEGLFRNASTHAAGLVIGDRPLTQLTPLYKDPRSD
LPATQFNMKWVESAGLVKFDFLGLKTLTVLDRAVKHLKKRGFEIDLGKLPFDDAKTYELL
ASGQTVGVFQLESQGMRDTLRKMRCGSIEEITALISLYRPGPMDNIDTFVDCKFGRKPVD
TLHPSLEAVLKETYGVIVYQEQVMQIAQILAGYSLGEADLLRRAMGKKKKEEMDLQKIRF
VSGAKEKNVPEEQSGSIFELVAKFAGYGFNKSHAAAYAFISYQTAWLKANTPVEFFAASM
SLDLSNTDKLAVFHQDARRFGITVRAPDVNRSGADFEVENGEVLYALGAIRNVGLEAMKH
LVAVRAEGGPFRDVFDFVERIDPRQVNKRAIENLARAGAFDSIHKNRAQIVASADVLIAH
AQSCHADRQGGQGGLFGSDPGAGRPRLSKTENWNQVDLLDEELSAVGFYLTGHPLEDMVG
MLRRRRTVMLAEAMAQAEAGAEAFRMCGVVRRRQERASQSGEKFAFVSLSDPTGEYEVLY
PPESLRKCRDVLEPGKAVAIKVRAKARDGEVRFFGDDAEPIEKAVENVVAGLRVHLSPSA
AEIDALKRRLEPAQAQKGGEVTFVAAIGGGREIELRLPGRYTLDAALRGALKTAPGVALL
EDV
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgcggaggggcaaggcttcgtccacctgcgggtccgttcggcctattcgctg
ctggaaggcgctatcaaggccgaccagatcggcaagctggccgccgaggccaagatgcct
gccgccggccttgccgaccgcgccaacctgttcggcgctcttgagtactcgtcctacgcc
aaggatgcgggcgttcagccgatcattggctgcgccatccccgtcgtcgggattggcggc
ggcccgaccgagcgctgggcccgtgcgccgacgctcatgctgctggcgcagaatgagcgc
ggctatctcaacctctctgaactgtcgtcgatcgcctatcttgacagcgctgaactgccc
gaacccgttgttccgtgggccaaggtggccgagcatagcgagggcctgatcctgctgtca
ggcgggaccgatgggcccgtggacgctctcttcgccgccggcaagaccgccgaggcctcg
gcggccttggccgagatgcatcgcgtgttcggcgatcgcttttatgtcgaactgcagcgc
cacgggctgcctcgccaggcggcggcggagccgggtctggtcaactgggcgtatgaccac
gacgtgccgctggtggcgaccaacgacgtctatttcgccaagccgggcttctacgacgcc
cacgacgcgctgctgtgtatctccgacggcgcattcgtcggccaggacgagcggcggcgt
gtcacgcccgagcattggttcaagccggctgaagagatgcgcaagctgttcgccgatctg
cccgaggcttgcgacaacaccctcgacatcgcccggcgctgcgccttcatggtgcacaag
cgcgacccgatcttgcccagcttcccgaccggcgatggccgcaacgaggccgaggagctc
gagcaccaggcgcgcgagggcctgaagatgcgccttgaggggctgaccctctcggccccc
gaggaagagtattggaagcggctcgatttcgagctcggcatcatcaagaagatgggcttc
ccaggctacttcctgatcgtgtcggacttcatcaagtggggtaaggctcacggaatcccc
gtcggccccggccggggctcgggcgccggctcgctggtagcctgggtgctgaccatcacc
gacctggatccgctgcggttcgggttgctcttcgagcgcttcctcaatcccgagcgggtt
tcgatgcccgacttcgacgtcgacttctgtcaggagcggcgcgaagaggtgatctcctac
gtgcaggagaagtacggccgcgatcgcgtggctcagatcatcaccttcggctcgcttcag
gcgcgcgcggtgctgcgcgacgtggggcgcgtgatgcagctgccgctgggtctcgtcgac
cggctctgcaagatggtgccgaacaacccagccgcgccggtgaccctggcccaggcgatc
gatctggagccgcgcctcaagcaggccaagaaggaagacgccaacgtctcagcctgtctg
gacgtcgcactgcagttggaaggcctgttccgcaacgcctcgacccacgccgccggcttg
gtgatcggcgaccggccgctcacgcaacttacgccgctttacaaggatccgagatcggac
cttcccgccacccagttcaacatgaagtgggttgagagcgccggtctggtgaagttcgac
ttcctgggcctcaagacgctgacggtgctggaccgggcggtgaagcacctcaagaaacgc
ggtttcgagatcgacctcggcaagctgcccttcgacgacgccaagacctacgaattgctc
gcttctggtcagacggtcggcgtgttccagctcgaaagccagggcatgcgcgacacgctg
cgcaagatgcgctgcggctcgatcgaggagatcaccgcgctgatctcgctctatcgtccg
ggcccgatggataacatcgacaccttcgtcgactgtaagttcggtcgaaagcctgtcgac
accttgcacccgtcgctcgaggccgtgctgaaggagacctacggcgtcatcgtctaccag
gaacaggtgatgcagatcgcccagatcctggcgggctacagcctgggcgaagccgacctt
ctgcgtcgcgccatgggcaagaagaagaaggaagagatggatctccagaagatccgtttc
gtctccggcgccaaggaaaagaacgttccggaggagcagtccggctcgatcttcgaactg
gtcgccaagttcgccggctatggcttcaacaagtcgcacgccgccgcctacgccttcatc
tcgtaccaaaccgcctggttgaaggccaatacgcccgtcgagttcttcgcggcctcgatg
agcctggatctgtcgaacaccgacaagctggcggtcttccaccaggatgcgcggcgtttc
gggatcacggtgcgtgcgccggatgtgaaccggtccggcgccgatttcgaggtcgagaac
ggcgaggtgctctatgcgctcggcgccatccgcaacgtcggcctcgaagcgatgaagcat
ctggtggcggtacgcgcggagggcgggccgttccgcgacgtctttgactttgtcgaacgc
atcgacccccggcaggtcaacaagcgggcgatcgaaaacctggcgcgggccggggccttc
gactcgatccacaagaaccgcgcccagatcgtcgcctcggccgacgtcttgatcgcccac
gcccagagctgccacgccgaccgccagggcggtcagggcggccttttcggctcagacccc
ggcgcgggccggccccgtctgtcgaagaccgagaactggaaccaggtcgatctgctggat
gaggaactgtcggctgtcggcttctacctgaccggccacccgctggaggacatggtcggc
atgctgcgccgtcggcgcacggtcatgctggccgaggccatggcccaggccgaggccggg
gcggaggccttccggatgtgcggcgtggtgcgtcgtcgccaggagcgcgcctcccagagc
ggcgagaagttcgccttcgtctccctttccgatcccactggcgagtacgaggtgctctat
ccgccggagtctcttcgcaagtgccgagatgtcctggagcctgggaaggccgtggccatc
aaggtgcgcgccaaggcgagagacggcgaggtgcgtttcttcggcgacgacgccgaaccg
atcgagaaggcggtcgaaaacgtggtggcgggtctgagggtgcacctgtcaccgtcggcc
gccgagatcgatgcgttgaaacggcgtctcgaacccgctcaagctcagaaggggggcgag
gtcaccttcgtcgcggcgatcggcggcggccgagagatcgagctccggctgcctgggcgt
tatacactcgatgcggcgctgcgcggtgcgctgaagaccgcgcccggggtggcgctgctg
gaagacgtttag
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integrated database retrieval system
