Campylobacter cuniculorum: CCUN_0640
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Entry
CCUN_0640 CDS
T05046
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ccun
Campylobacter cuniculorum
Pathway
ccun03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ccun00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CCUN_0640 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccun03021
]
CCUN_0640 (rpoB)
03400 DNA repair and recombination proteins [BR:
ccun03400
]
CCUN_0640 (rpoB)
Enzymes [BR:
ccun01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CCUN_0640 (rpoB)
Transcription machinery [BR:
ccun03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CCUN_0640 (rpoB)
DNA repair and recombination proteins [BR:
ccun03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CCUN_0640 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ARJ56265
UniProt:
A0A1W6BW29
LinkDB
All DBs
Position
624323..628456
Genome browser
AA seq
1377 aa
AA seq
DB search
MLDNKLGNRLRVDFSNVSKQIEIPNLLQLQKASFDYFLNFNNNGSESGIERVFKSIFPIH
DPQNRLSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIRLTLHERDDKTGEKVGIKDI
KEQEIYIREIPLMTDRISFIINGVERVVVNQLHRSPGVIFKEEASSTIANKLVYTAQIIP
DRGSWLYFEYDAKDVLYVRINKRRKIPVTMLFRALGYKKQDIIKLFYPIQTIIVKKDKFL
TEFNPNDFMDRIEYDIKDEKGEVVHQAGKRLTRKKAEQLLKDGLKWIEYPVEVLINRYLA
SPIIDKQSGELLFDSFTLIDESKLAKIKEQKSFEIANDLANGVDTAIINSFAQDNETLKL
LKQSENIEDENDLAAIRIYKVMRPGEPVVKDAARAFVNDLFFNPERYDLTKVGRMKMNHK
LGLDVPEYLTVLTNEDIIKTAKYLIKVKNGKGHIDDRDHLGNRRVRAIGELLANELHLGL
VKMQKAIKDKFTSLNTELDKVMPYDLINPKMITTTIIEFFTGGQLSQFMDQTNPLSEVTH
KRRLSALGEGGLVKERAGFEVRDVHATHYGRICPVETPEGQNIGLINTLSTYAKVNDLGF
VEAPYKKVINGKISNEVVYLTATQEEGLFIAPASTKIDAKGNIIEEFVEARQDGETMLVK
REEVQLIDLCSGMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLISNAPIVGTGMEK
IIARDAWEAIKAKRGGVVEKVDNKSIFILGEDEKGPFIDHYTMEKNLRTNQNTNYIQYPI
VKKGDVVEAGQIIADGPSMDGGELAIGKNALIAFMPWNGYNYEDAIVVSERIIREDVFTS
VHIYEKEIEARELKDGVEEITKDIPNIKEEDIAHLDESGIAKIGTHIKPGMILVGKVSPK
GEVKPTPEERLLRAIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDKRAKEAYD
KEKMSLEKEHHDRLLMMDREEMLRVCALLAKSPLNSAQKINNKDYKKGQKVDIKDLEKIN
RFTLTTFIKAYSKEVQKQYEDLKNHFQNEKKKLKVEHDEKLEILEKDDILPSGVVKLVKV
YIATKRKLKVGDKMAGRHGNKGIVSTIVPEVDMPYLPGGKSVDIALNPLGVPSRMNIGQI
LESHLGLVGLRLGEQIQEIFNAKQKDFIKELRVKMLEICSIPRLAKEKEFIKNLNDEKLL
NYARDWSKGVKFATPVFEGVNIEEFSKLFEMAKIDMDGKTELYDGRTGEKIAERVHIGCM
YMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLREM
LTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDKDEDNE
NT seq
4134 nt
NT seq
+upstream
nt +downstream
nt
atgttagataataaattaggaaatcgtttaagagtagatttctcaaatgtttcaaaacaa
atagaaattcctaatcttctccaattacaaaaagcaagttttgattattttttaaatttc
aataacaatggtagcgaaagcggtatagaaagagtatttaaatctatatttcctattcat
gacccgcaaaatcgtttaagtttggagtatgtcagtagtgagataggtaagccaaaatat
actataagagaatgtatggaaaggggtttgacttattcagtaaatttaaaaatgaaaatt
cgactcactttacatgaaagagatgataaaaccggtgaaaaagtaggtataaaagatatt
aaagagcaagaaatttatataagagaaattccattaatgacggatagaatttcattcatt
atcaacggcgttgaaagagttgtagtgaatcaattacacagaagtccgggtgtgattttt
aaagaagaagcgagttctaccattgcaaataaacttgtttatacagcacaaattatccct
gatagaggttcttggctgtattttgaatacgatgcaaaagatgtgctttatgtaaggatt
aacaaaagaagaaaaattcctgttactatgctttttagggctttaggatataaaaaacaa
gatattatcaaacttttttatcctattcaaactataattgtaaagaaagataaattttta
actgaattcaatcctaatgattttatggatagaatagaatatgatattaaagatgaaaaa
ggtgaggttgtccatcaagcgggtaaaagactgacaagaaaaaaagcagagcagctttta
aaagatggtttaaaatggatagaatatcctgttgaagtgcttatcaatcgttatttagca
agtcctatcatcgataaacaaagcggagagcttttatttgattcttttactttaatcgat
gaaagtaaattagcaaaaattaaagagcaaaagagctttgagattgcaaatgacttagca
aatggcgttgatacagcgattatcaattcttttgctcaagataatgaaactttaaaatta
cttaaacaaagtgaaaacatagaagatgaaaatgatttagctgcaattagaatttacaag
gtgatgcgtccgggagaacctgtggtaaaagacgctgcacgagcttttgtgaatgatttg
tttttcaatccggaaagatatgatttaactaaagtaggtcgtatgaaaatgaatcataaa
cttggtttagatgtgcctgaatacttgaccgttttaaccaatgaggacattattaaaacc
gcaaaatatctcattaaggttaaaaatggcaaagggcatattgatgatagagaccattta
ggcaatcgtcgtgtcagagccataggagagcttttagcaaatgagcttcatttaggactt
gtgaaaatgcaaaaggcgattaaagataaattcacttctttaaatacagagcttgataag
gttatgccttatgatttgattaatccaaagatgattacaacaactatcattgaatttttt
acaggcggacagctttctcaatttatggaccaaaccaatcctttgagcgaggtgactcat
aaacgtcgtttgtctgcacttggtgaaggaggattagtcaaggaaagagcagggtttgaa
gtaagagatgtccatgcaactcattatggaagaatttgtccggttgaaacgccagaaggg
caaaatataggtttgattaatactctttcaacttatgcaaaagtcaatgatttaggcttt
gttgaagcaccttataaaaaagtgattaatggtaaaataagcaatgaagtggtgtatttg
accgctacgcaagaagagggacttttcatagctccagcttcaacaaaaattgatgctaaa
ggcaatataatagaagaatttgtcgaagcaagacaagatggcgaaacgatgctggttaaa
agagaagaagtgcaattaatcgatctttgttctggtatggttgtgggagtggctgcttct
ctcattccttttttagagcacgatgatgctaacagggctttaatgggttcaaatatgcaa
cgtcaagctgtgcctttgttaatctctaatgctcctattgttgggacaggaatggaaaag
attattgcaagagatgcttgggaagccattaaggctaaacgcggtggagtggttgaaaag
gttgataataaaagtattttcatcctaggcgaggatgagaaaggtccctttatagaccat
tatactatggaaaagaatttaagaacgaatcaaaatacaaattacattcaatatcctatc
gttaaaaagggtgatgtcgttgaagcagggcagattatagctgatggtccaagtatggat
ggaggggaattagctatcggtaaaaatgctcttatagcttttatgccttggaatggttat
aattacgaagatgccattgtcgtgagtgaaagaattatacgcgaagatgtttttacaagt
gtgcatatttatgaaaaagagattgaagcgagagaattaaaagatggggtagaagaaatc
actaaagacattccaaatattaaagaagaggatatagctcatcttgatgaaagtggtatc
gcaaaaataggaactcatataaagccgggtatgattttagtcggcaaggtctctccaaaa
ggtgaggttaaacctactccagaagaaagacttttaagagcgattttcggtgagaaagcc
ggacatgtagtcaataaatctttatacgccacagcttctttagagggagtggttgttgat
gttaaaattttcactaaaaaaggctatgagaaagataaaagggcaaaagaagcttacgat
aaagaaaaaatgtctttagaaaaggaacatcacgataggcttttgatgatggatagagaa
gaaatgttaagagtttgtgctcttttggcaaaatctcctttgaattcggctcaaaagatt
aataacaaagattataaaaaagggcaaaaggttgatataaaagatcttgaaaaaatcaat
cgttttaccttgacaactttcattaaagcttattctaaagaagtgcaaaaacaatatgaa
gatttaaaaaatcatttccaaaatgagaagaaaaaactcaaggttgaacacgatgaaaag
cttgaaattttagaaaaagatgatattttaccgagtggggttgttaaactcgttaaggtt
tatattgcaacaaaaagaaagctcaaagtgggcgataaaatggcaggaagacacggaaac
aaaggcatagtttcaaccatagttccagaagtggatatgccttatcttccgggcggaaag
agcgtggatatagccttaaatcctctcggcgtcccaagtcgtatgaatatagggcaaatt
ttagaaagccatttaggacttgtaggattaagactaggagaacaaattcaagagattttt
aatgcaaaacaaaaagatttcatcaaagaattaagagtaaaaatgcttgaaatttgttcc
attccaagacttgcaaaggaaaaagaattcattaaaaatttaaacgatgaaaagctttta
aattatgcaagggattggagtaagggagtgaaatttgccactcctgtttttgaaggtgtt
aatatagaagaatttagcaaacttttcgaaatggctaagattgatatggacggaaaaacc
gagctttatgatggacgcacgggagaaaagattgctgaaagagtccatataggttgtatg
tatatgttaaaacttcatcacttagtcgatgaaaaagtccatgcaagaagcacgggacct
tatagtcttgtaactcaacaacccgtcggaggtaaagctttatttggtgggcaaagattt
ggagaaatggaagtttgggctttagaagcttatggtgcggctcatactttaagagaaatg
ctgacaatcaaatcagacgatgttgagggaagatttagtgcttataaggcattgactaag
ggagagaatgtcccagctacgggaattccagaaactttttttgttttaaccaatgagctt
aaatctcttgctttagatgttgagatttttgataaggacgaggataatgagtaa
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integrated database retrieval system
