Corvus cornix (hooded crow): 104685049
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Entry
104685049 CDS
T03546
Symbol
PMS2
Name
(RefSeq) mismatch repair endonuclease PMS2
KO
K10858
DNA mismatch repair protein PMS2
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw03430
Mismatch repair
ccw03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
104685049 (PMS2)
03460 Fanconi anemia pathway
104685049 (PMS2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccw03400
]
104685049 (PMS2)
DNA repair and recombination proteins [BR:
ccw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
104685049 (PMS2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
DUF5741
Motif
Other DBs
NCBI-GeneID:
104685049
NCBI-ProteinID:
XP_039416457
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All DBs
Position
14:2209869..2221938
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AA seq
934 aa
AA seq
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MRDYRPALLPLARVDPHRAVGGAEPSGRGARTVRGGRAPAAPGAGGAGREPEKSAARPAP
PGPRWRRAAPCPQPAGAIRPIDRGSVHRICSGQVVLNLGTAVKELVENSLDAGATNIDIK
LKDHGADLIEVSDNGGGVEEENFEGLTLKHYTSKIQDFSDLIHVETFGFRGEALSSLCAL
SDVTIFTCHKSAKVGTRLVFDHNGKITQKTPFPRQQGTTVSIQQLFYTLPVRHKEFQRNI
KKEYTKMVQLLQAYCIISKGVRINCTNQIGQGKKSCVISTAGSPSLKENIGAVFGQKQLQ
SLIPFVQLPPSEAVCEEYGLNSADMPQNLYSITGFISRCDHGVGRSATDRQFFFINQRPC
DPAKVVKIVNEVYHLHNKHQYPFVVLNIGVDSECVDINVTPDKRQILLQEEKFLLAILKT
SLMEMFGSDVNKLNVNQKLLDIAGNLKTLPEETEKPQAEMLSDSETENPSGEGKRIMTLA
RLRESFSLHQGTESNFQGSKKVKQQHSSPRQRLLNTTGSTVKIQKAVLTKEAESCPKFDS
RVSIPRRQSRKLEDNADSGFCSISESDAGCSTPGAGSCINSESAINSKEEFCSTEEQIQK
ECLKTAGCSKKSLDCDVQVLGTEPKLDQVNDWTNQNEFSQEPSSCSPRVKRFKSRNFKSE
ADDSKAGKYPEVKNTTVDVLVEVKKKIVPLEFSMKVLAEKVKKVIQQQQKNTETENYRRF
KAKISPGDNKIAEDELRKEISKEMFAKMEIIGQFNLGFIIAKLNSDLFIIDQHATDEKYN
FEMLQQHTVLQGQKLIVPQNLNLTAVNETVLIENLEIFRKNGFDFFINENAPVTQRVKLV
SLPTSKNWTFGPQDIDELIFMLSDCPGVMCRPSRVRQMFASRACRKSVMIGTALNVQEMR
KLITHMGEIEHPWNCPHGRPTMRHIVSLDLISPE
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgcgggattaccgtcccgcccttctgccattggccagggttgacccccacagggcagtg
ggcggggctgagccgtcgggccggggagcgcggacggtgcggggcgggcgcgccccggcc
gctcccggcgctggcggagcggggcgggagcctgagaagagcgcggcgcgtcccgccccg
ccggggccccgatggaggcgggctgcgccctgcccgcagcccgccggggccatccggccc
atcgaccgcgggtctgtccatcgcatctgctcggggcaggttgtgctgaacctcggcact
gccgtgaaggagctggtggaaaacagcttggatgccggagctaccaacatcgatataaaa
cttaaagatcatggagcagatctgatagaagtttcagataatggaggtggagtggaagag
gaaaactttgaaggcttgactctgaaacattatacatcaaagatacaagatttttctgat
ctaatacatgttgaaacatttgggtttcgaggtgaagctttgagttcactgtgtgcatta
agtgatgttaccatttttacctgtcataagtcagcaaaggttgggactcgtttggtgttt
gatcacaatggcaaaattactcagaagactcctttcccacgacagcagggaacaactgtc
agcatccagcagttgttttatacgttaccagtgcggcataaagagtttcagagaaacatc
aaaaaggaatatacaaaaatggtccagctgttgcaggcctactgtattatttccaaagga
gtgcggattaactgcactaatcaaatcggccaagggaaaaaaagctgtgtgatatccact
gctggaagtcccagtttaaaggagaacattggagcagtatttggacaaaaacagttgcag
agccttattccttttgttcagcttcctcctagtgaagctgtctgtgaagaatatggactc
aactctgctgacatgccacaaaatctgtatagtattactggcttcatttctcgttgtgat
cacggtgttggaaggagtgcgacagacagacagttcttctttatcaaccaacgtccctgt
gatccagcaaaggttgtcaagattgtgaatgaagtttatcacttacacaataaacaccag
tatccatttgttgtccttaacattggggttgattctgagtgtgttgatatcaatgtaact
cctgacaaaaggcaaattttacttcaggaggaaaagtttttattagcaattctaaagact
tctctgatggaaatgtttggtagtgatgttaacaaactgaatgtcaatcagaaacttctg
gacattgcaggcaacttgaagacacttcctgaagagacagaaaagcctcaggcagaaatg
ctgtctgactctgagactgaaaatccaagtggtgaaggcaaaagaataatgactcttgcc
agattaagggagtcgttctctctccatcaaggaacagaaagtaattttcaaggctctaaa
aaggtaaaacagcagcacagttcccctagacaaaggttgctcaataccactgggagtact
gtaaagatccaaaaggctgtcttgactaaggaggctgagagttgtcctaagtttgactca
agggtgtcaattccaaggagacagtcgagaaaattagaagataatgcagattctggattc
tgtagcatttctgagtcagatgctggatgtagtacaccaggagctggaagctgcatcaat
agtgaaagtgcaattaattctaaagaagaattctgtagcacggaagaacagattcagaag
gaatgtcttaaaactgctggatgtagtaagaagtcactggactgtgatgttcaggtcttg
ggcactgaacccaagttagatcaagtgaatgactggaccaatcaaaatgagttctctcaa
gaacccagtagttgctccccaagagtaaaacgttttaaaagcagaaactttaaaagtgaa
gcagatgattccaaggcaggtaaatatcctgaagtgaagaacactactgttgatgtactg
gtggaagttaaaaagaaaattgtgcctcttgaattctctatgaaggttttggcagaaaag
gtaaaaaaggtaatacaacaacaacagaaaaatacagaaactgaaaattacagaagattt
aaagcaaaaattagtcctggggacaataaaatagcagaagatgaattaagaaaagagatc
agtaaagaaatgtttgcaaaaatggaaatcattggccagttcaatttagggtttataata
gcaaagttgaattcggatcttttcataattgaccaacatgccactgatgagaaatacaac
tttgagatgttgcaacaacacactgttctccaaggtcagaagctgatagtgcctcaaaat
ctcaatttaacagcagtaaatgaaactgtattgattgaaaacctggagatattcagaaaa
aatggatttgattttttcataaatgaaaatgctcctgtaactcaaagagttaaattggta
tcgttgccaacaagcaaaaactggacttttggtccacaggacatagatgagctgatcttc
atgttgagtgactgccctggagtgatgtgtaggccctccagggtccggcagatgtttgct
tctcgagcttgccgaaagtctgtgatgattggaactgcactgaatgtgcaggaaatgaga
aaactgatcacccatatgggtgagattgagcatccctggaactgcccccatggaaggcct
actatgagacacatagtcagtttagacttgatttcaccagaataa
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