Corvus cornix (hooded crow): 104687526
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Entry
104687526 CDS
T03546
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104687526 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccw03019
]
104687526 (CNOT1)
Messenger RNA biogenesis [BR:
ccw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104687526 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104687526 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
104687526
NCBI-ProteinID:
XP_039414198
LinkDB
All DBs
Position
11:complement(7521566..7577628)
Genome browser
AA seq
2377 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVIK
LSKVQEVIFGLALLNSFSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCASVEECRNIIVQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGSQAHTWNVEVLIDVLKELNPSLDFKVVTYE
LDHPGFQIRDSKGLHIVVFGIQRGLGMEVFPVNAIYRPWKHAEGQLSFIQHSLINPDIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDSLAGMASL
SLGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTGFSGIGGLSSQLPVGG
LTTGSLTGIGTGALGLPAVNNDPFVQRKLSTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITMAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGSLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTASTTPATSTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQDLVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVA
AHHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQRDMMEQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQQAWATDDVAQIYDKCMTEL
EQHLQSIPHTLAMNPQVQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADAD
LLLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNM
QQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSR
GNAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREW
VNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRALAEQQH
NPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHD
VRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWL
ELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVL
LVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEIN
IAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNIQLINALV
LYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNS
HTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWN
HEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7134 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaataggcacggt
cccgaggcagacaggcatttactacgctgtctattctcgcacgtggatttcagtggcgat
ggtaaaagcagtggcaaagattttcatcagactcagtttctgatccaggagtgtgcgtcg
ctgattacaaaaccaaactttatctcgacgctgtcatacgccattgacaatcccttgcac
tatcagaagagtctaaagccttcacctcatttatttgcccaattgagtaaagtcatcaaa
ttaagtaaagttcaagaggtaatttttggtctggctttactgaactctttcagctcagat
ctgcgaggttttgctgcccagtttatcaaacagaaactcccggatcttttgcgctcttac
attgacgcggacgtcagtggaaatcaagaaggtggcttccaagatattgcaatagaggtc
ctgcaccttctcctctcccatctcctctttgggcagaagggagcctttggggtaggacag
gagcagattgacgctttcctcaaaacattacgtagagattttccccaggagcgttgccct
gtggtgcttgcaccacttctataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagccaaaaccatgatggagagttctctggcagatttcatgcaa
gaagttggctatggcttttgtgcaagtgttgaagaatgtcgcaacataatcgtgcagttt
ggtgttcgggaagtcacggctgcccaggttgccagggttttggggatgatggctcgaact
cattcaggattgacggatggtattccattacaatctatttcggctcctggcagtgggatt
tggagtgatggcaaagataagagtgacggaagccaagcccatacctggaatgtggaggtc
ttgattgatgttcttaaagagctgaaccctagcctggacttcaaagtagtaacgtacgaa
ttggaccatccaggatttcagattcgtgatagcaagggcctgcatattgtagtctttggc
atccagagagggctgggaatggaggtttttccagttaatgccatatacagaccttggaag
catgcagagggccagctctccttcatccaacattccctcataaaccctgacatcttctgt
tttgctgactacccttgccatactgttgccacagacatcctgaaagcaccaccagaggat
gacaatcgagaaattgctacatggaagagcctggatttgatagagtctctgttacgattg
gcagaagtggggcagtatgaacaggttaagcagctcttcagttttcctatcaagcattgc
ccggatatgctggtattggccttattgcagatcaacacctcctggcataccttgcgccat
gaactcatctccacgctcatgccgattttccttggcaaccatcccaactcagccatcatt
ttgcactatgcatggcatggacagggtcagtctccttcaattcgtcagcttatcatgcat
gccatggcagaatggtacatgagaggggagcagtatgaccaggctaaattgtcacgcatt
cttgatgtggcgcaagacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgacgggaatacctcaaacttgacaaatgg
ctcacagataaaattcgggagcatggggaacctttcatccaggcctgtatgactttctta
aagagaagatgtccatctatcctgggtggccttgctccagagaaggatcagcccaaaagt
gctcagcttcctccagaaaccttggcgactatgttggcctgtctgcaagcttgtgctggg
agtgtttctcaggagctgtcagagacgatcctcaccatggtagcaaactgcagtaatgtc
atgaacaaggctcgacagcccccacctggagtcatgcccaaaggacgcccgcccagcgcg
agcagcttggatgccatctctcctgtgcagatcgactcgcttgcaggaatggcctctctc
agtttaggtggctcagctgctcctcacacgcagagcatgcaaggcttccctccaaacttg
ggctctgcattcagtactcctcagtcaccagcaaaagcattcccacctctttccacccaa
aaccagacaaccggtttcagtggcatcggaggactctcttcacagcttccagtaggtggt
cttactacgggtagcctgactggcataggaactggagccctgggccttcctgcggtgaac
aatgacccattcgtgcaaaggaagctgagcacatctggactgaaccagcctacattccag
cagagtaagatgaaaccttctgacttatctcaggtgtggccagaggctaatcagcacttt
agcaaagaaatagatgatgaggcaaacagctacttccagcgtatttacaaccatccacca
cacccaaccatgtctgtggatgaggtcttggaaatgctgcagaggtttaaggactccaac
attaaacgggaacgagaagtgtttaactgcatgctgaggaacttgtttgaggaatatcgt
ttctttccccagtacccagataaagagctgcacataacagcctgtctcttcgggggcata
atagagaaaggactggttacttatatggcattgggcctggccctgcgctatgttcttgaa
gccctacgaaagccttttgcatccaaaatgtactattttggtattgctgcactagataga
tttaaaaatagattgaaggactatccccagtattgtcagcacttggcttctattagtcac
tttatacagttcccgcatcatttacaggagtacatagaatacggacagcaatccagagat
cctcctgtgaagatgcagggttcaatcaccacccctggaagtattgcacttgcccaggct
caggcccaggcccaggttccagcaaaagctcctcttgctggccaagtcagcactatagtg
accacctcaaccaccaccaccgttgcaaaaaccattacaatcacccgaccaactggagtc
agcttcaagaaagatgtgccgccttccattaatactaccaacatagatacgctgttagta
gcaacagatcaaacagagaggattgtggaacctccagagaatgtccaggaaaaaattgct
ttcatcttcaataatctgtctcagtcaaatatgacacagaaggtggaagaattgaaggaa
acagtgaaagaagagttcatgccttgggtatcacagtatcttgtgatgaaaagagtcagt
attgagcctaactttcacagtttatattcaaacttccttgacacgcttaagaatccagag
tttaataaaatggttctgaatgaaacctacagaaacatcaaggtgctattgacatcagat
aaagctgcagccaacttctcagaccgttccttgttaaagaaccttggtcactggctggga
atgattacaatggctaaaaataagcccatcttgcacacggatttggatgtgaagtcgcta
ctgctggaagcatacgttaagggacagcaggaattgctttatgtggtgccatttgttgcc
aaagtcttagaatccagtgtcaggagtgtggtcttcagacctccaaacccatggacaatg
gccattatgaatgttttagctgagctacatcaagaacatgatctaaaattgaatctgaag
tttgagattgaggtgctctgcaagaatcttgcgctagacatcaatgagctgaaacctgga
agtctcctgaaagataaggatcgtctaaaaaatttggatgagcagctgtctgctccaaag
aaggatgtgaagcagccagaagagctaccacccatcacaacaactactgcttctacaact
ccagctaccagcaccacttgtacagccacggttcctccacagccccagtacagttatcat
gacatcaacgtctattctttaggagggttggctccgcatattactttaaatccaacgatt
ccgctgttccaagcccacccacagctgaagcagtgcgtgcggcaagcgatcgagcgtgca
gtgcaggacctcgtccatccagtggttgataggtccatcaagattgccatgacgacctgt
gagcagatagtcaggaaggacttcgccctggactcggaggagtcacggatgcgtgtggcc
gctcaccacatgatgcggaacctgactgctgggatggccatgattacctgcagggagcct
ttgctgatgagcatagctaccaacttgaaaaatagctttgctactgcactgagggcagcc
tccccacagcagagggacatgatggagcaggcagctgcccagttagcacaggataactgt
gagcttgcctgctgctttatccagaagacagctgtggaaaaggcaggccctgagatggac
aagaggctcgcaactgaatttgagctcagaaaacatgctaggcaggaggggcgtcggtac
tgcgatcctgttgtgttaacgtaccaggctgagcggatgccagaacagatcaggttaaag
gttggaggtgtggacccaaaacagctggctgtttatgaagagtttgcacgcaatgtccct
ggcttcttgcccaccaatgacttaactcagcctacaggattcttggctcagcctatgaag
cagcaagcttgggctacagatgatgtagcacaaatttatgacaaatgtatgacagaacta
gagcagcacctgcagtccattccacacaccctggccatgaatcctcaagttcaagcgttg
cgtagcctcttggaggcagtggtagtggctcggaactcccgggatgctattgctgcactt
ggactactgcagaaggctgtagagggcttgctggatgccaccagtggggctgacgctgac
ctcctgctccgctatcgtgaatgtcacctgctggtgctgaaggctctgcaggacggccgt
gcctatggatctccgtggtgtaacaaacaaatcactaggtgcctgatcgaatgcagagat
gagtacaagtacaacgtggaagctgtggagctgctaatccgcaatcaccttgttaacatg
cagcagtatgaccttcacttggctcagtccatggagaatggcttgaactacatggctgtg
gcatttgccatgcagttggtaaagatcttgttggtggatgagagaagcgttgcccacgta
acagaagcagatctgtttcacaccattgagacactcatgagaattaatgctcattccaga
ggaaacgccccagaaggattaccccagctgatggaagtggtccgatcaaactatgaagca
atgattgaccgtgctcatggaggtcctaatttcatgatgcattcaggaatttcccaagct
tctgagtatgatgacccaccaggcctgagggagaaggcagaatacctgctgagggagtgg
gtgaacctctaccattcagctgcagcaggccgtgacagtaccaaagcattctctgcgttt
gttggacagatgcaccagcaggggatcctgaaaacagatgacctgatcacccgttttttc
cgtctttgcaccgaaatgtgtgttgagatcagctatcgagccctggccgagcaacagcac
aatcctgcagccaaccccactatgattcgagccaagtgctaccacaacctggatgccttt
gtgcgactcattgcactgctggtgaagcactctggggaagcaaccaacacagtcacaaag
atcaatctcctgaataaggttcttggtattgtggtgggagttcttctgcaagaccatgat
gttcggcagagtgagtttcagcaacttccttaccatcgcattttcatcatgttgctgttg
gaattaaatgctcctgagcacgtgctggagaccatcaacttccagacactcacagctttc
tgtaacacatttcacatcctgaggcctacaaaagctccaggttttgtttatgcctggctg
gaactgatctcccatcggatatttattgcaagaatgctggcacatacaccacagcagaag
ggttggcctatgtatgcccagttattgatcgatctattcaagtacttggctcctttcctt
agaaatgtggaactcaccaaacctatgcaaattctttacaagggcactctgcgtgtgttg
ctggtcttgttgcatgatttcccagaatttctttgtgactaccactatgggttctgtgat
gtgatcccacctaactgtattcagctaaggaatctgatcctgagtgccttcccacggaac
atgaggcttccagaccctttcacccccaacctaaaggtggacatgttaagtgagattaat
attgctccacgaatactcacaaatttcactggtgtgatgccacctcagttcaagaaagac
ttggattcctatctcaaaacccgttctccagtcacctttttgtctgacttgcgtagcaac
ctacaagtatcgaatgaacctggcaaccgctacaacatccagctcattaatgcactggtg
ctctatgtaggtactcaagctattgcacacattcacaacaaaggcagtacaccctctatg
agcaccattacccactcagctcacatggacatcttccagaatctggcagtagacctggat
actgaaggccggtacctcttcctgaatgccatcgccaaccagctgcggtaccccaacagt
cacacccactacttcagctgcaccatgctctacctgtttgcagaggccaacacagaagct
atccaggagcagatcaccagggttctcttggaacgactgattgtaaataggcctcatccc
tggggtctccttattactttcattgagctgataaaaaatccagcgttcaagttctggaac
catgagtttgttcactgcgctccagaaattgagaagttgttccagtcggttgcacagtgc
tgcatggggcagaagcaggcccagcaagtcatggaagggactggtgccagttag
DBGET
integrated database retrieval system
