Corvus cornix (hooded crow): 104688213
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Entry
104688213 CDS
T03546
Symbol
GRIN1
Name
(RefSeq) glutamate receptor ionotropic, NMDA 1 isoform X1
KO
K05208
glutamate receptor ionotropic, NMDA 1
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw04020
Calcium signaling pathway
ccw04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
104688213 (GRIN1)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
104688213 (GRIN1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ccw04040
]
104688213 (GRIN1)
Ion channels [BR:
ccw04040
]
Ligand-gated channels
Glutamate (ionotropic)
104688213 (GRIN1)
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GFIT
Motif
Pfam:
Lig_chan
ANF_receptor
Lig_chan-Glu_bd
SBP_bac_3
Ion_trans_2
Peripla_BP_6
DUF6724
DUF4645
Rap-GAP_dimer
Motif
Other DBs
NCBI-GeneID:
104688213
NCBI-ProteinID:
XP_039417762
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Position
17:10249324..10287572
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AA seq
988 aa
AA seq
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MSTMRLLLLALLFSSSFARAGCDPKIVNIGAVLSTKKHEQIFREAVNQANKRHGTWKLQL
NATSVTHKPNAIQMALSVCEDLISSQVYAILVSHPPAPNDHLTPTPVSYTAGFYRIPVIG
LTTRMSIYSDKSIHLSFLRTVPPYSHQANVWFEMMRVFNWNHVILIVSDDHEGRAAQKKL
ETLLEEKESKSKKRNYENLDQLSYDNKRGPKAEKVLQFDPGTKNVTSLLLEAKELEARVI
ILSASEDDAATVYRSAAMLNMTGSGYVWLVGEREISGNALRYAPDGVIGLQLINGKNESA
HISDAVAVVAQAVHDLFEKENITDPPRGCVGNTNIWKTGPLFKRVLMSSKYSEGVTGRVE
FNEDGDRKFANYSIMNLQNRKLVQVGIYNGSNVLTNDRKIIWPGGETEKPQGYQMSTKLK
IVTIHQEPFVYVKPTQADGTCREEFTINGDPVKKVFCTGPNETIPGRPTVALCCYGFCID
LLIRLAGVMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTINN
ERAQYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLYLLD
RFSPFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFAM
IIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELST
MYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIG
MRKDSPWKQNVSLAILKSHENGFMEDLDKTWVRYQECDSRSNAPATLTFENMAGVFMLVA
GGIVAGIFLIFIEIAYKRHKDARRKQMQLAFAAVNVWRKNLQRELRRRSKCIPEHALRTS
GIHFGYPRAVAEPDLVTASPVGKVTLIGTKAIGEDSLPAPGAERGRAPRPAAPAPWRLVL
PACANQQYHPTDITGQLNLSDPSVSTVV
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccatgcggctgctgctgctcgccctcctcttctcctcgtccttcgcccgcgcc
ggctgcgatcccaagatcgtcaatatcggcgcggtgctgagcactaagaagcacgagcag
atcttccgcgaggcggtgaaccaggccaacaagcggcacggcacctggaagctccagctc
aacgccacctccgtcacccacaagcccaacgccatccagatggccctgtccgtctgcgag
gacctcatctccagccaggtctatgcaatattagttagccaccctcctgctcccaacgat
cacctaacaccaacacctgtgtcatacacagctggcttctacaggatccctgtcattggt
ctgacaacacgcatgtctatatattctgataagagcatccacctgtcctttttgcgcacg
gtcccaccttactctcaccaggccaacgtctggtttgagatgatgagagtcttcaactgg
aaccacgtcattctgatagtcagcgacgaccacgagggtcgtgctgcacaaaagaagctg
gagaccctcctggaggagaaagagtccaagagtaaaaaaaggaactatgaaaacctcgac
caactttcctatgacaacaagcgaggacccaaggctgagaaagtgcttcagtttgaccct
ggaaccaaaaatgtgacatcgctgctgctggaggcgaaggagctggaggccagggtcatc
atcctctctgccagcgaggatgacgcggccacggtgtacagatcagcagccatgctcaac
atgacgggctccggctacgtgtggctggtgggggagcgggagatctcgggcaatgccctg
cgctacgcccccgatggagtgatcggtctgcagctcatcaacggcaagaacgagtctgcc
cacatcagtgacgctgtcgccgtggtggcccaggccgtgcacgacttgtttgagaaggag
aatatcacagacccaccgcggggctgcgtgggcaacaccaacatctggaagacaggaccc
ctttttaagagggtgttgatgtcctccaagtactcagagggtgtcaccgggcgggtggag
ttcaatgaggacggggacaggaaatttgccaactacagcatcatgaacctgcagaatcgg
aagctggtccaggttgggatttacaacggcagcaatgtcctgaccaacgacaggaagatc
atctggccagggggggagactgagaaacctcagggctatcagatgtcaaccaagctgaag
attgtgaccatccaccaagagccctttgtgtatgtgaagcccactcaggcagatgggacg
tgcagggaggaattcactatcaatggagatcctgtcaaaaaggtgttctgcactggaccc
aatgagaccatcccaggccgtcccaccgtggcactgtgctgctacggcttctgcatcgac
ctgctcatccgcctggcaggggtgatgaacttcacctatgaggttcacctggtggctgat
ggtaaatttggtactcaagagcgggtgaacaacagcaacaagaaggagtggaacgggatg
atgggggagctgctgagcggccaggcagacatgattgtggctcccctcaccatcaacaac
gagcgggctcagtacattgagttctccaagcccttcaagtaccagggcctcaccatcctt
gtgaagaaggaaatcccccgcagcaccctggactcgttcatgcagcccttccagagcacg
ctctggctgctggtggggctgtctgtgcacgtggtggcagtgatgttgtacctcttagac
cgattcagcccatttggccggttcaaagtaaacagtgaggaggaggaggaagatgccctg
actctctcctcagccatgtggttctcctggggagtcctgctgaactccggcattggagaa
ggtgctccccggagtttctctgcccgtatcctcggcatggtgtgggctggctttgctatg
atcatcgtggcttcatacactgccaacctggcagccttcctggtgttagaccgacctgag
gagaggatcacaggcattaacgacccccggctgcgcaacccctcggacaagttcatctac
gccacggtgaagcagagctccgtggacatctacttccgacggcaggtggagctgagcacc
atgtacaggcacatggagaagcacaactacgagagcgctgccgaagccatccaggcagtg
agggacaacaagctccacgccttcatctgggactcggcggtgctggagttcgaggcctcc
cagaagtgtgacctggtgacaacgggggagctcttcttccgctccggcttcgggatcggg
atgcgcaaggacagcccctggaagcagaacgtctccctggccatcctcaagtcccacgag
aacggcttcatggaggatttggacaagacttgggtgaggtatcaagagtgtgattcccgt
agcaatgccccagcaacactcacctttgaaaatatggcaggtgtgtttatgctggtggct
ggaggtattgttgccgggatatttttaatattcatagagatagcttacaaaaggcataag
gacgcgcggaggaagcagatgcagctggcgtttgcggccgttaatgtgtggaggaaaaac
ctgcagagagaactgagaaggaggagcaaatgtatccccgagcatgctctacgcaccagc
gggatacattttggttacccccgtgcggtagcagagccagacctggtcactgcgtccccc
gtcggaaaggtcacactcattggcacgaaagcaattggggaggactcgttgccagcgccc
ggcgccgagcgcggccgggccccccggcccgcggcccccgcaccatggcggctggtgctc
ccagcctgcgccaaccagcagtatcaccccaccgacatcactggccagctcaacctctcc
gacccctcagtcagcactgtggtgtga
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