Corvus cornix (hooded crow): 104693161
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Entry
104693161 CDS
T03546
Symbol
COL9A1
Name
(RefSeq) collagen alpha-1(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw04510
Focal adhesion
ccw04512
ECM-receptor interaction
ccw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104693161 (COL9A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104693161 (COL9A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
104693161 (COL9A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ccw00535
]
104693161 (COL9A1)
Proteoglycans [BR:
ccw00535
]
Extracellular matrix (ECM) proteoglycans
Others
104693161 (COL9A1)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
104693161
NCBI-ProteinID:
XP_039424860
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All DBs
Position
3:85609445..85676995
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AA seq
919 aa
AA seq
DB search
MKSHWKITAFFYLCSFLWSFISATIQHQSRLPVILGASHRIDICPTIRIGQDDLPGFDLI
SQFQIEKAASQGIIERVVGSTSLQVAYKLGPNVDFRIPTSAIYSNGLPDEYSFLTTFRMT
GATLQKYWTIWQIQDSSGKEQVGVNLNGQVKSVEFSYKGADGRHQTASFLHLPFLFDSQW
HKLMIIVEANSVTLFIDCIKIESLNIKPKGKINTDGFAVLGKLKNNPQISVPFEIQWMVI
HCDPLRPQREGCGELPARITQTGIERGPPGPPGPPGPPGPPGVPGIDGIDGERGPKGPPG
PPGPDGDAGKPGSPGLPGEPGADGFTGPDGSRGAPGPKGQKGEPGLPGARGLPGKGLLGP
PGPAGAAGLPGEVGRAGPPGDPGKRGPPGLPGPPGPPGTIGLQDGDLLCPSACPPGRPGH
AGLMGMKGQKGSKGESGEPGKQGYKGEEGDQGPSGEVGAQGPPGILGIRGITGIMGPKGT
KGARGLDGDPGPQGLPGAPGDQGQRGPLGETGPKGERGPQGTRGINGLPGPKGEPGLPGV
DGREGIPGMPGAKGEPGKPGAPGDIGLQGLPGLPGSPGMKGIPGPKGNRGPPGVPGLMGN
PGKQGQQGPEGEAGPTGPRGPPGSRGETGPAGPPGLPGKLGPQGNIGLPGLPGPPGLPGG
KGDRGSVGEPGPKGEQGAPGAEGDGGEKGDLGDMGLPGAKGAIGNPGDPGSRGPEGSRGL
PGMEGPRGSPGPRGLQGEQGAPGLPGSEGPAGKEPSDHHIKQVCMRVMQEQLAQLAASLR
RPEFGAPGLPGRPGPPGAPGPAGENGFPGQLGPRGLPGLKGPPGEIGRKGPKGEPGERGE
RGLPGRGLKGYPGPRGLPGEPGKASYGREGRDGDRGPPGVAGQPGVPGPPGPPGPPGYCE
PASCRMQAGQRAGKNMKGP
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagccactggaaaattacagctttcttttacctgtgtagttttctgtggtctttc
atctcagccaccatccagcaccaatcaagactaccagttattctgggtgccagtcacaga
attgatatctgcccaacaatcaggattggtcaagatgacttaccaggctttgacctgatt
tctcagttccaaatagaaaaagctgcttcccaaggaattatcgaaagagtagtgggatcc
acttctctacaagtggcttataaattgggacccaatgtagacttcaggataccaaccagt
gccatatattccaacggattgcctgatgaatattcctttctaactacttttcggatgact
ggggccacacttcagaaatattggactatttggcagattcaggattcttcaggaaaagaa
caagttggagtgaatctcaatggtcaagtgaaaagtgttgagttttcttataaaggagca
gatggaagacaccaaacggcatcatttttgcatctgcctttcttgtttgactcccaatgg
cacaagcttatgataatcgtggaagcaaacagtgtcacactttttattgactgtattaaa
atagaatccttaaacataaaaccaaaagggaaaatcaacactgatggctttgctgtgctt
ggaaaacttaaaaataatcctcaaatttcagttccgttcgagatccagtggatggtgatt
cactgcgaccccctgcgaccccagcgcgaaggctgcggcgagctgccggctcggataacc
cagacgggaatcgagagaggtccccctggtccaccaggccccccaggtccaccagggcca
ccaggagttcccggtattgatggcattgatggggagagaggcccgaagggcccccctggt
ccaccgggtccagatggggatgcaggcaaaccaggatcccctgggctgcctggagagcca
ggagctgatggattcactggacctgatggctcacgtggagccccaggaccaaaaggacag
aagggggagccaggacttccaggtgctcgtggacttccaggcaaggggcttcttggacca
cctggtccagcaggtgcagcaggacttcccggggaagtaggtcgtgctggtccacctgga
gatccaggaaaaagagggccaccagggctaccaggacctccaggtcctccaggaactatc
ggcctgcaagatggtgacctgttgtgtcccagtgcttgtccacctggccgtccaggacat
gctggcttaatgggtatgaaggggcaaaaaggttcaaaaggagagtctggtgaaccagga
aaacaaggttataagggtgaagaaggggaccaaggacccagtggtgaagtgggagctcaa
ggccctccaggcattctaggtatcagaggtataactggcataatgggacctaaaggtacc
aaaggagctcgtggtcttgatggtgatcctggtccccaaggtcttcctggtgcacctggg
gatcaaggacagagaggtccactaggagagacaggtccaaagggagaaaggggtcctcaa
ggtacaagaggaataaatggcctccctgggcctaaaggagagcctggcttaccaggagtt
gatggccgtgaaggaatccctggaatgcctggagctaaaggtgaaccaggaaaacctgga
gctccaggtgatatagggctccaaggattgccaggtttaccaggctctccaggtatgaaa
ggtattcctggcccaaagggtaatagaggtcctcctggggtgccagggttaatgggaaat
cctggtaaacagggtcaacagggcccagagggagaagcaggtccaacaggaccccgggga
ccaccaggtagcagaggggagacaggtcctgcaggtcctccaggtttaccagggaaattg
ggtccccagggtaatattggacttcctggactgcctggtcctccaggccttcctggtggt
aaaggtgaccggggttcggtgggtgaaccaggacctaagggtgaacaaggtgcacctgga
gcagaaggagatggaggagaaaagggtgacttaggtgacatgggattaccaggagcaaag
ggagctattggtaatcctggagaccctggttcccgtgggcctgagggaagtcggggactg
ccgggcatggaagggccacgaggctcacctggaccgcgaggattgcagggggaacagggt
gccccaggcctgcctggcagcgaagggccagctggcaaagaaccaagtgatcaccacatt
aagcaggtttgcatgagagtcatgcaagaacaattagctcagctggcagccagccttagg
aggccagaatttggtgctccaggtcttcctggccgaccaggcccaccaggtgctccagga
cctgctggtgaaaatggtttcccaggacagcttggcccccgtggcctgcctggccttaaa
ggtccccctggtgagattggtcgtaaaggtcctaaaggcgaaccaggagaaagaggagag
agaggattgccaggcagaggactgaaaggttatcctggaccaagaggtcttccaggtgaa
ccaggcaaagccagctacggcagggaaggccgtgacggtgaccgaggtccccctggggtg
gccgggcagcctggggttcctggtccccccggccctcctggccctcccgggtactgcgag
ccagcgtcctgcaggatgcaggcgggacagagagcaggaaagaacatgaaagggccctga
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