Corvus cornix (hooded crow): 104693432
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Entry
104693432 CDS
T03546
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X3
KO
K06237
collagen type IV alpha
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw04382
Cornified envelope formation
ccw04510
Focal adhesion
ccw04512
ECM-receptor interaction
ccw04518
Integrin signaling
ccw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104693432 (COL4A4)
04518 Integrin signaling
104693432 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104693432 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
104693432 (COL4A4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
104693432 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ccw04147
]
104693432 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
ccw00536
]
104693432 (COL4A4)
Exosome [BR:
ccw04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
104693432 (COL4A4)
Glycosaminoglycan binding proteins [BR:
ccw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104693432 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
104693432
NCBI-ProteinID:
XP_019145450
LinkDB
All DBs
Position
9:16120726..16187345
Genome browser
AA seq
1347 aa
AA seq
DB search
MQKGDPGEEGPPGPPGAVGTPLLPIKGPRGDPGFPGPVGEMGSVGPIGPSGLLGRPGYDG
RSLPGMPGVSGAPGPQGFQGDPGLPGTGELIPGRPGFPGPPGLPGQPGRQGLPGLPSVIC
TDRGIPGEPGAKGQIGLPGRKGAKGEKGSQGLCSCSAGPPGPRGMQGPPGTQGKKGQMGY
PGRCGEKGDPGISGAVGSPGLPGTPGSAGQHGEKGEKGDPGRVRIKGLKGERGPTGVPGF
PGQRGLDGRDGELGLPGEKGAEGDSGVAILGDKGFPGLPGPPGVKGQMGLPGLGLPGPPG
ARGSPGDFGDMGNVGPPGPKGQKGETVCITSPYPGNPGPPGFKGVQGQKGLKGLPGHPGP
NGFDGQKGHRGRPGAGIPGPEGFRGTAGDPGDEGERGSTIDGKNGLPGPPGIDGPKGLPG
DTTYGPPGIPGNRGLPGPPGAQGARGNPGIPGLQGQPGTPGFPGAKGFRGPEGDVGAPGC
PGFPGSPCVTGLPGPPGLRGVMGLPGPQGLPGFKGQRGDRGLAGPPGIKGLKGSPGSRGL
PGPPGSRGPPGLPGNKGLIGFPGETGSKGIQGPQGFPGLPGIQGPMGIFGVKGEEGKRGL
PGPSGECGDIGIKGERGPPGDSGCVNLRLEKGQMGDPGFPGEHGLRGERGEKGNAGFRGT
RGFPGKNGVPGLPGDQGDTGVMGFPGSRGLPGPKGFQGMTGFQGGPGDQGDVGLPGNPGY
PGLIGPKGCKGKRGDPTPLLGTHGRKGPPGDPGLPGLRGFPGEKGLPGIQGQPGRPGSKG
DPGYPGLPGLPGATGPQGLPGEPGEKGKHGILGPPGLQGLPGSQGRKGLPGLPGLDGLDG
LKGQKGSAGAPGPSETGPPGYPGEIGPKGDRGEPGWPGISIPGPPGERGFPGFPGRRGPV
GPTGPMGRSPDSASPGPPGDQGLPGLDGIRGDPGNPGPPGETVFVRGDPGDTGIRGAPGN
PGPRGQQGARGPPGSPGREGPKGPMGIHGPQGPPGATGQPGDQGFPGRPGPRGPTGFIGD
PGESGKVDDSCPTTPGPPGDAGQRGEDGSAGLPGPIGHPGPQGIKGEEGSYGLPGQDGLP
GAPGPPGDHGSRGEQGYTGPQGPPGQTGVPGQPGPHIRSASGFLLVLHSQSDREPLCPQG
MPKLWTGYSLLYLEGQEKAHNQDLGLAGSCLPVFSTMPFAYCSINQVCYYASRNDKSYWL
SSAAPLPMAPLSEEEIQPYISRCAVCEAPAQAVALHSQDQSIPPCPLNWRSLWIGYSFLM
HTGSGDQGGGQSLMSPGSCLEDFRSAPFIECQGQRGTCQFFANEYSFWLTTVMPELQFAP
APLSGTLKEGQEQRKKISRCQVCLKHG
NT seq
4044 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagggggatccaggagaagaagggcctccaggtcctcctggagctgttggaact
ccactgcttcctataaaaggtcctcgaggagatcctggatttccgggtcctgtcggtgaa
atgggctcagttggaccaattggtccttcgggccttctaggaagaccaggatacgacgga
agaagtctgcctggcatgccaggagtaagtggggcaccaggacctcaaggttttcaaggg
gaccctggtttgcctggaacaggtgaattaatcccaggaagaccaggatttcctggacca
ccaggcctaccgggacagccaggaagacaagggttacctggactacccagtgtaatctgt
actgacagagggatccctggagaacctggagcaaaaggtcagataggccttccaggaaga
aaaggtgcaaaaggagagaagggaagtcaaggcctctgctcatgtagtgctggtcctcct
ggtccccgtggcatgcaaggacctccaggtactcaaggaaagaaaggacaaatgggatac
cctggaagatgtggagaaaagggcgacccaggcatatctggtgcagtgggatcaccaggg
ctccctgggactcctggttctgctggacagcatggggaaaaaggagagaagggtgatcca
ggaagagttagaataaaaggattaaaaggtgaaagaggacctactggggttccaggattt
ccaggccaaagaggtcttgatggcagagatggggaactaggattgccaggggaaaaagga
gctgagggcgattctggagtagcgattctgggtgacaaaggattccctgggctcccggga
cctcctggggtaaaaggccagatgggattgcctggcctggggcttcctggccctcctgga
gccagaggtagccccggagactttggtgatatgggtaatgttgggccacctggtccaaaa
ggccagaaaggtgaaactgtctgtattacgtcaccatatcctggaaatccaggtccccca
ggctttaaaggtgttcaaggacaaaagggtttaaaaggactccctgggcatcctggacca
aatggttttgatgggcaaaaaggccatcgagggaggccaggagcaggaatcccagggcca
gaaggctttcgaggcacagctggtgatcctggtgatgaaggtgaaagaggatctacaatt
gatggcaaaaacggccttccaggtccacctggcatagatggcccaaaaggtcttccaggt
gacaccacatatggccctccaggaatcccaggcaacaggggactgccgggaccccctggt
gcacaaggagcaaggggtaatccaggcattcctggacttcaaggacagcctggcacccca
ggatttccaggtgccaaaggttttagaggcccagaaggtgatgtaggagcaccaggctgt
ccgggcttccctggctcaccatgtgtcacaggcttaccagggccaccaggactcagaggt
gtcatgggcctgccaggacctcaaggcttaccaggctttaaaggtcagaggggagacagg
ggcctggctgggccacctggaatcaaaggtctcaaaggctctccgggctcacgaggtctc
ccaggtcctccaggctcacgaggtcccccaggacttccaggcaataaaggactcattggc
ttcccaggagaaacaggaagcaaagggattcaaggaccccaaggattcccaggactccca
ggaatacaaggcccaatgggaatctttggtgtaaaaggtgaagaaggaaaaaggggtcta
cctggtcctagtggagaatgtggagatataggaataaaaggtgaaagggggcctccagga
gacagtggctgtgttaacctccgtcttgagaaaggacaaatgggggacccagggtttcct
ggggagcatggacttagaggtgaaagaggtgaaaaaggcaatgctggtttcagaggcaca
cgaggatttccagggaagaatggtgttccaggactgccaggtgaccaaggtgacactgga
gtgatggggtttccaggatcacggggtttgcccggaccaaagggctttcaaggaatgaca
ggttttcaaggaggaccaggtgaccagggtgatgttggcttaccaggaaaccctggctat
ccaggactgattggccccaaaggatgtaaaggcaagagaggtgacccaactcctctgctt
ggtacacacggtcggaaaggacctccaggagatccaggattaccaggacttcgtggattc
ccaggggagaagggtttaccaggtatccaaggacaacctggaagaccaggatccaagggt
gaccctggatatccagggctacctggattaccaggagctacaggtcctcagggattgcca
ggagaacctggagaaaaaggaaaacatggaattttgggacccccaggattgcaagggtta
ccgggatcccaaggcagaaaaggtcttcctggactgcctggactggatggcttggatggg
cttaaaggtcaaaagggttctgcaggagctccaggtccgagtgagacagggcccccagga
tacccaggagaaattggaccaaaaggagacagaggtgaacctggatggcctggtatttct
attccaggcccccctggagaaaggggattcccaggatttccaggtagaagaggacctgtt
ggacccactggacctatgggaagatctcctgatagtgcttcccctggtcctccaggtgat
caaggattacctggtttagatggcatcagaggtgatcctgggaatcctggtcctcctgga
gagactgtctttgtgcgaggagatccaggtgatactggcattcgaggggcaccaggtaat
cctgggccacgaggacaacagggagccagaggccctccagggagcccgggaagagaaggc
ccaaagggccctatggggatccatggcccacagggtccacctggtgctacaggacaacca
ggagaccaaggttttccaggaagacctggtcccagaggtcccacaggtttcataggtgac
cctggtgaatcaggaaaagtagatgattcatgccctacaacccctgggcctcctggggat
gcagggcaaagaggagaggatggctctgcaggattaccagggccaataggccaccctgga
ccccaaggcataaaaggtgaagaaggatcatatggcctgccaggtcaagatgggttacct
ggggcacctggaccaccaggtgaccacgggagccgaggagagcaagggtacactgggcca
caaggtccacctggccagactggtgtcccaggacaaccaggcccccatattagatctgca
agtggattcttgctcgtccttcacagtcagtcagacagagaaccactctgcccacagggg
atgccaaagttatggactggctatagtctgctgtacctggaaggacaagagaaagcccat
aatcaagatcttggtctggctggatcctgcctccctgtgttcagtaccatgccatttgct
tactgcagcatcaaccaagtgtgttactatgccagccgcaatgacaagtcctactggctg
tccagtgctgctcccctgcccatggcaccgctgtccgaggaggagatccagccatacatc
agcagatgtgctgtctgcgaggccccagcacaggcagtggcacttcacagccaggaccag
tcaattcctccctgcccactgaactggaggagcctttggataggatactcttttttgatg
cacactggctctggtgaccagggtggtggacagtcccttatgtcacctggaagctgcctg
gaagacttcagatcagcaccattcatcgagtgccagggccagcggggaacgtgtcagttc
tttgctaatgaatacagtttctggttgaccactgtgatgcctgagctgcagtttgcacca
gcgcccctatcagggactcttaaagaaggacaagagcagaggaaaaaaatcagtagatgc
caggtatgcctgaagcatggctaa
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