Corvus cornix (hooded crow): 104697122
Help
Entry
104697122 CDS
T03546
Symbol
COL25A1
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
ccw
Corvus cornix (hooded crow)
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ccw00536
]
104697122 (COL25A1)
Glycosaminoglycan binding proteins [BR:
ccw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104697122 (COL25A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
104697122
NCBI-ProteinID:
XP_039406311
LinkDB
All DBs
Position
4:29305111..29610014
Genome browser
AA seq
743 aa
AA seq
DB search
MGGGGKEIKAAAAEGCASTLGKSRGAAGQDGSGKPGPGKPGCGGDRCPRRAGPVGSALAA
LLSALAAASCVYLGVRTSDLQARVAAIEGARGGFSAAAPLPPLPGFSLEQLNAMMQEKVE
RLLAQKSYEHLAKIRVAREAAPECNCPPGPPGKRGKRGRRGETGPPGLPGRNGYPGPIGM
DGKLGQPGPQGPPGPKGEKGDQGDQGPRMVFPKINHGFLSADQQLIKRRLIKGDQGQAGP
PGPPGPPGPRGPPGDTGKDGPRGMPGLTGEPGKPGEQGLTGPQGPPGQKGSVGVPGVPGR
DGQVGEPGLPGIAGEKGEAGLKGDPGERGEKGDAGENGLKGDTGEKGDPGSSAAGIKGEP
GESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGTKGDRGEAGPVGKGERG
EPGIPGPKGKTGEPGSRGPKGSKGDTGERGDTGSAGPRGPPGQKGDQGATEIIDYNGNIH
EALQRVATLTVTGPPGPPGPQGLQGSKGEPGSPGTPGADGEQGPKGSKGDTGDPGMPGEK
GGIGLPGLPGANGMKGEKGDIGLPGAQGPSVIGPPGPPGPHGPPGPMGPHGLPGPKGEPG
LNGLKGLKGEPGQKGDRGPLGLPGASGLDGKPGARGVDGPVGPHGPAGPKGERGEKGTVG
DPGPRGPYGLPGKDGEPGLDGFPGPRGEKGDIGEKGEKNTVGEKGKKGKKGPKGEKGEQG
APGLDAPCPLGPDGLPMPGCWQK
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atggggggcggaggaaaggaaatcaaagctgccgcagctgaagggtgtgcgagcacgctg
gggaagagccgaggagccgcaggacaggatggcagcgggaagcccggccccgggaagccc
ggctgcggcggggaccgctgcccgcggcgggccgggccggtcggctccgcgctggccgcg
ctcctctcggcgctggccgcggcctcctgcgtctacctgggggtgcggaccagcgacctc
caggccagggtcgcggccatcgaaggcgcccgagggggcttctctgccgccgccccgctc
ccgccgctgcccggcttttccttggagcaactgaacgcgatgatgcaggagaaagtggag
cgacttctcgcccagaaatcctacgagcacttggcaaaaatacgagtagcgagagaagcg
gctccagagtgcaactgtccaccaggtcctccagggaaaagaggtaagcggggaagaaga
ggagagactggacctcctggcctaccagggcgaaatggctatccgggtccgattggtatg
gatggaaagctgggtcagcctggtcctcaaggccctcctggtccaaaaggcgagaaggga
gatcaaggtgatcagggccctcggatggtgtttcctaaaatcaatcatgggtttctctct
gctgatcagcagctcattaaacgccgcctcattaagggggaccaaggacaagctggaccc
cctggacctccaggaccaccaggacccagaggtcccccaggagatactggcaaagatggt
cctcgtgggatgcctggcttaacgggtgagccaggaaaaccaggagaacaaggactgaca
ggacctcaggggcctccaggacaaaagggttctgttggagtgcctggtgttccagggaga
gatggacaagtgggtgaacctggtttgcctggcatagcaggagagaagggagaagcaggg
ctcaagggtgaccctggagaaagaggagaaaagggggatgctggcgagaatggactgaag
ggtgacacaggagaaaagggtgaccctggctcttctgcggctggaattaagggtgaacct
ggtgaatctggacggcctggacaaaagggtgaaccaggccttcctgggcttcctggactc
cctggaataaagggtgaaccaggtttcattggtccacaaggagaacctgggttgccaggg
ctaccaggaacaaagggtgacagaggagaggcaggccctgttgggaagggtgagcgaggt
gaacctggaatccctggaccaaaggggaaaacaggtgaacctggatctagaggccccaaa
gggtcaaagggtgatacaggtgagagaggtgacacgggatctgcaggtccacggggacca
cctggacagaagggtgatcaaggtgcaacagagataattgattataatggcaatatccat
gaagctctgcagagggttgccaccctgactgtcacgggaccaccaggaccaccaggaccc
caagggctgcaagggtcaaagggtgaaccaggatccccaggaactccaggagctgatgga
gagcagggtcctaagggctcaaaaggagacacaggtgatcctggaatgcctggagaaaag
ggaggaatcggactgcctggcctaccaggagctaatggcatgaaaggcgaaaaaggagac
attggtttgcctggtgcccaaggtccttcagtgataggaccacctggaccaccagggcca
catggtcctccaggccctatgggacctcatggactgcctggcccaaagggtgaaccaggg
ttaaatggtcttaaaggattgaagggtgaaccaggtcaaaagggtgacagagggcccctt
ggtcttccaggagcatctggcttagacggaaagccaggagcccggggtgtagatggccca
gttggtccccatggccctgcaggtcccaaaggagagagaggtgagaagggaactgtaggt
gaccctggacccagaggaccatacggcttgcctggcaaagacggcgagcctggccttgat
ggtttccctggtcctcgaggagaaaagggtgatataggagaaaagggagaaaagaacaca
gtgggggaaaagggaaagaaaggcaaaaaagggcctaaaggggagaaaggagaacagggt
gctcctggattagatgcaccttgcccattgggtcctgatggattaccaatgcctggctgt
tggcaaaagtga
DBGET
integrated database retrieval system
