Colletotrichum destructivum: 87947577
Help
Entry
87947577 CDS
T10409
Symbol
CDEST_11077
Name
(RefSeq) Putative like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
cdet Colletotrichum destructivum
Pathway
cdet03018
RNA degradation
cdet03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cdet00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
87947577 (CDEST_11077)
09123 Folding, sorting and degradation
03018 RNA degradation
87947577 (CDEST_11077)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdet03019
]
87947577 (CDEST_11077)
03041 Spliceosome [BR:
cdet03041
]
87947577 (CDEST_11077)
Messenger RNA biogenesis [BR:
cdet03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
87947577 (CDEST_11077)
mRNA degradation factors
5'-3' decay
Lsm complex
87947577 (CDEST_11077)
Spliceosome [BR:
cdet03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
87947577 (CDEST_11077)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
87947577
NCBI-ProteinID:
XP_062783284
LinkDB
All DBs
Position
7:join(1676526..1676528,1676644..1676784,1676865..1676915,1676988..1677185)
Genome browser
AA seq
130 aa
AA seq
DB search
MLPLGLLNAAQGHPMLVELKNGETLNGHLVMCDTWMNLTLKEVVQTSPEGDKFVKIPEVY
VKGNNIKYLRVPDDIIDVVKENQANHQQGGFRGGRGGNRGDHGGRGGGGDRGRGRGQGRG
GRGRGNRGGS
NT seq
393 nt
NT seq
+upstream
nt +downstream
nt
atgttacccctcggcctcttgaacgctgcccaagggcaccccatgctcgtggagctgaag
aatggcgaaaccctcaacggccacctggtcatgtgcgatacctggatgaacctgacgttg
aaggaggtcgtgcagacgagtccggaaggtgacaagttcgtcaagatccccgaagtctac
gtgaaaggaaacaatatcaaatacctgcgagtccccgacgacatcatcgacgtggtcaag
gaaaaccaggcgaaccaccagcaaggaggcttccgcggtggcagaggaggaaacaggggg
gaccacggcggtcgcggcggcggcggcgacagaggcagaggcagaggccagggccgcgga
ggacgcggccgcggtaaccgtggtggttcatga
DBGET
integrated database retrieval system
