Cryptococcus deuterogattii: CNBG_3579
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Entry
CNBG_3579 CDS
T09796
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cdeu
Cryptococcus deuterogattii
Pathway
cdeu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdeu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CNBG_3579
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdeu03019
]
CNBG_3579
Messenger RNA biogenesis [BR:
cdeu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CNBG_3579
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
CNBG_3579
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
DUF3819
CNOT1_TTP_bind
CNOT1_HEAT
ARM_Cnot1
NOT1_connector
Acetyltransf_11
Motif
Other DBs
NCBI-GeneID:
88179856
NCBI-ProteinID:
XP_062883536
LinkDB
All DBs
Position
1:complement(1815251..1822400)
Genome browser
AA seq
2274 aa
AA seq
DB search
MSIPPPGLGGGVSRTGPPPGFGGGAAHSPVSDASATTMASSAGVAGSVGGGAVRRDGQGG
TAVIVRAQIVFLLTTFTEDSFEKASTEIRTLASTNGPEMYHHFLRRAVVVANPIIQTLIQ
HSNQYKDDPAAPPPQIPTTGQAALVWRLLVTEAARAARDVQLGPHFSFIMLSSSPSTPLP
LPSLRLFNLPPALLFSLSAYTLASPHVFPQNHASYPVFHAILAQTFQPTMELLRSPGVPF
WMMNVPGREPFTDDLTLQEARTLILALFPRAQSPTSGTAFRPATPTNPTSPHSSPLNSLQ
RATLLTSLTVKFSSPAIILQTLSALSPGGPPRSPGSIPLEDILFELGESLTQDEGTVEAV
VQRWWMSWLFEGSPEDVRRRVTEEACHVVHGLCEGLPLGRVVDLHGVIKGLSAVDAISWP
DVVKSFDTPMTIAAYPSSIPLLVSLICLPSQTPVPPMAGLLPAHLDAPMWENISSLLSVL
THLTSLAPDAMPIFTMPSTPPPSVYSRIVDPPPSEQVWSKAARQQARDLQGAGLWNTLGL
IQVLVHACALAEMDHHSDREREERADIGRRATEILEKAAKLAPELVLIALEKLPKPLPSP
VVVQQTRLLAIYLSTKPSDITSSALVFHQMWEINPENLLSVLLEFYGEDENNLGRIVEIG
SELKILGKLLAVQDNLHFVLDVAALASNRELLNLERWLADGIEVKGEEFLEAIFDFVEHK
IRLEFEHQHQPENAPPLLFTLGPTVYSIFIRVVRNAPNLAREDIARFKNLRTDILILHPR
LLNLRPHSKQEQGFSEAKFSKDVVEKVDEIYQRMYSGQLKLDDVVEELKAFQKSDDSKEQ
DIFAHALHSLFDEYKFVKSYPPKELTMTGLLFGAIIDYRLVKDTPAFVATRYVLDACKTP
PHEPLYQFGITALSVLRNSLVDFPGLCRSLLEIPALHESHPVLINDIQQALIEREELDLQ
GGVKLAFPALKLPVLIEEGDDEFREPETAKKDAIMFHVNQIAPTNYEDKAKALLELFEDQ
YSRWFAHYFIDVRVSLEQNRHEIYLQLLQKLGSPLLDRHILWETYRKARELLNSEATINS
ASERAILKTVAMWLGRITLAQNKPIRMKELSVKDILIQGYDTKRLIVAIPFVCNLLASCR
DSAVFHPPNPWLVAILRLLSEFYHFGELRLNMKFEIEVLFSKLGIELDSFEPSNLLRMHV
PPPPAQPEIPNRLDLELQRATTELVNGSQRLGDLPGNEAYARIQQLQTEQAVQAAQDALA
RRVDELIAQLPEYLVFNQDYPIFTAPTLKRIVHHSIDRAIREIITPVIERSVTIAGISSR
DLIQKDFGTEPDAIKMRQAAHMMVQNLAGSLALVTCKEPLRSSMIANVKSMLEQNGYTDE
TMPDAMIAGVVNQNLDVACAVLKKAAMEKAAKDIDVNLAPQYAARKAHQSSRSTAPFWDG
ASFGVAISHTALPDPLKLRPGGLTPQQFRVYEDFGEPTRMLSSHPAANGDYLSASYQNLT
LNDGLVPAEIKTGPSPRHGFVQDVAEAPEVVASPHAIPPQTSIDKFHEVAAEIQKIVSQT
PVPSISALPADHELRDLIRAIVIIANQSVHRENTTLAIAQKVVQLLYRSTVQLGREVYVY
LLQQLCDLSAKVDKEVKQWLIYAEDVRKLNVPVTVTLLRAQSIGVQELDVALSHIVIRSY
PSEILDFVTQLIRECSVSDIAFLPRQAFSHSLASLLKAQEAGHATAQVDSLLEELRGPRE
PQSSVEGDRSKTVIDSKLQERLAHYFLEWVRVCSSSKDPEVPFVPYITFLQKEGILSGED
VSSAFYRTAINTAVDLDTAKLNPDGSSRFYGVDALAKLILLIVKNYGDKSGASSVGRAVY
YYNKIITIMSYSLVQRQLAMGDAFNQRPWARFFTSMLSELATIEYNLPETYIGCLKHLAN
NLGITQPTYAPRFAFGWVSIISHRLFMPKLLSTQRDEGWPEFHRCVMWLLRFLAPFLQSD
DMTPSSRSIFRATIRLLMLLLHDFPEFLVEFYHTLSTVIPPHCTQMRNIVLSAFPHSEAP
LPDYYKRLDQLVVEMQRFPTVRSDYIGALADGNVKAAIDQYVRTGVPTLPSIVAELKNRI
AVKSLGPQGSTAVTWNHTLMHASVFYLGTTAVARTFQQTGVVSFDPKAPEVAVLAGLAHA
FDGEGQYYMLNVVADQLRYPSAHTLFFIHFMLFLFGTSVQPELSSTIPERIARILLERTI
VKRPHPWGLLVTFIELLDNEAYGFWKQPFVRAQDEVFRLFGQVRQSVAARRELQ
NT seq
6825 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatccctcctcccggcctgggaggcggggtcagcagaacaggaccgcctccggga
tttggtggtggtgcggcccattccccagttagcgatgcgagtgcgaccactatggcaagc
agtgccggcgttgcgggaagtgttggcggtggtgctgttagaagagacggtcagggcggg
accgcggtgatcgtcagagcacagattgtattcttgttaacaacgtttacggaagatagt
tttgaaaaggcctcaactgagatcagaacgcttgcgtctaccaatgggccagaaatgtac
caccactttttacggcgagcggtcgtggttgccaacccaattatccagactttaatccaa
cattccaaccaatacaaggatgaccctgccgcgccgcctcctcagattcctaccacgggt
caagctgcgcttgtttggagattgctggttactgaagcagctagagcggctagggatgtg
cagctcgggccccatttctcctttatcatgctttcctcctccccatcaactcctcttcct
ttgccctccctacgattgtttaacctccctcctgcgcttcttttctctctctcagcatac
acactcgcgtccccccacgttttcccgcaaaaccacgcgtcttatcccgttttccatgcc
atcctcgcacagaccttccaacctacgatggagcttctacgatcgccaggtgttccattc
tggatgatgaacgttcctggaagagagccctttaccgacgatttaactttgcaggaagcc
aggactttgatcctcgcactcttcccgagggcccagagccctactagcggcaccgctttt
cgacctgctacgcctaccaacccgacttcgccacattcttctcctctcaactctcttcaa
cgtgcgacccttctcacttctctcactgtcaagttttcgtctcccgctatcatccttcaa
actttatccgcgttgtctccaggtgggccgccccggtcgccaggcagcattcctcttgaa
gacattttattcgagctgggtgagagccttacccaagacgagggcacagttgaggctgtt
gtgcagagatggtggatgtcttggttgtttgagggctcgccagaagatgtcaggcgaaga
gtcactgaagaagcgtgccatgtggtccatggtctgtgtgaggggttgcccttgggacgt
gtcgtagacctgcatggcgtgatcaaaggattgtcggcggtcgatgctatctcctggccc
gacgtggtcaagtcatttgacactccaatgaccattgcggcatatccttcatctattccc
ctccttgtttccctcatatgccttccgtcgcagacgcccgttcccccaatggctggtcta
ttgccagcacaccttgacgcgccgatgtgggaaaacatttcttcacttctctctgtgttg
acgcaccttacgagccttgccccggacgcgatgcccatcttcactatgccatccacccct
ccaccttcagtctattctcgtatagtcgatcctccaccttccgagcaagtgtggagcaag
gcagctcgtcagcaggcgagggatttacagggcgctggattgtggaatactttgggttta
atccaagtactggtgcatgcgtgtgctttggcagagatggaccatcattccgacagagaa
agggaagagcgggcggatattggcaggagagctacagaaattttggagaaggcagccaaa
ttggcgccagagttggttttgattgctctagagaagcttccaaaacctcttccctcacct
gtggtcgttcaacagactcgtctgttggcgatttacttgtcaaccaaacctagcgatatc
acttcatccgccttagtatttcatcagatgtgggaaataaaccctgagaaccttttatcg
gtcttgttagagttctatggggaagacgagaacaatttgggaagaattgtggagatcggc
tcagaactgaagattcttggcaagcttttggctgttcaggataaccttcactttgtcctc
gatgtggccgctttggcatccaacagagagttgctcaacttggagcgctggttggcggat
gggattgaagttaagggggaagagttcctcgaggctatctttgactttgttgagcacaag
atccgtctcgagtttgagcatcagcatcagcctgaaaacgcgcctcctctgttgttcacc
ctcggtcccactgtctattctatcttcatccgtgtggttcgcaatgcccccaacctcgct
cgtgaggacattgctcgtttcaaaaaccttcgtacggatatactcatccttcaccctcgt
cttctcaatctccgaccccatagcaagcaggagcaaggcttttctgaagccaaattctcg
aaggacgttgttgaaaaggtggacgaaatctatcaacgaatgtacagcggacagctcaag
ttggacgacgtggtggaggagctcaaagctttccaaaagtctgatgacagcaaggaacaa
gatatctttgcgcacgcacttcactcgctctttgacgagtacaagtttgtcaagtcgtat
cctcccaaggaattgactatgactggtcttctcttcggtgccatcattgactatcgactt
gtcaaggacaccccggcgtttgtggcgacacgatacgtcttggatgcttgcaaaactcct
ccccatgagcccttgtaccaatttggtatcaccgctttgagtgtgctccgtaattcgctt
gttgacttccccggtctctgtcgatctctcttagagattcctgctcttcatgagtctcat
cctgttttaatcaatgacatccagcaagcattgatcgagagagaagagttggaccttcaa
ggcggtgtcaagttggctttccctgctctcaaattgcctgtgcttattgaagagggagat
gacgagtttagagagccagaaactgcgaagaaagacgccatcatgttccacgtcaaccag
atcgctcccaccaactacgaggataaggctaaggctttgctcgaactattcgaagaccag
tattcccgttggttcgcccactatttcatcgacgtccgagtgagtcttgagcagaatagg
catgagatctacttgcaattgcttcaaaagctcggctcacctcttcttgatcgacacatc
ctctgggagacgtacaggaaagcaagggagttgctcaactcggaggcaacaatcaactcc
gcttcagagcgtgcgatactcaagacggtagccatgtggttgggccgtatcactcttgct
cagaacaagccaatcaggatgaaagaactctccgtaaaggatatcttaatccaaggttac
gacaccaaacgacttatcgtcgccatccccttcgtctgtaatttgctcgcctcttgcaga
gactcggctgtcttccatccgcccaacccttggttggttgccatccttagacttctttct
gagttttaccactttggtgagcttagactcaacatgaagtttgaaatcgaagttcttttc
agcaagctcggtatcgaacttgactccttcgagccatccaatctcctgcgcatgcatgtt
ccaccaccccccgctcagcccgagatccccaaccgactcgacctcgagcttcaacgtgcc
acaaccgaacttgtgaatggttctcaacgacttggagacttgccgggcaacgaggcgtat
gctcgcatccagcaattgcaaactgagcaagctgtacaagccgctcaggatgcgttggca
cgtcgcgtcgacgagcttattgctcaacttcccgaatacctcgtcttcaaccaagattac
cccatctttaccgctccaaccctcaagcgtattgtgcaccactcaatcgaccgggccatt
cgcgagatcattactcctgttatcgagcgttctgtcaccatcgccggcatctcttctcgc
gatttgattcaaaaagactttggcaccgagcctgatgccattaaaatgcgccaagctgct
cacatgatggtgcagaaccttgccggtagcttggcgctggtgacgtgcaaagagccattg
cgttctagcatgattgccaatgtcaagtctatgctcgaacagaatggctacacggatgag
accatgccggatgcgatgattgcgggtgtagtaaatcagaacttggacgtagcgtgtgcg
gtgttgaagaaagcggccatggagaaagcagccaaggatattgatgtcaatcttgcacct
caatatgcagcgcgaaaggcccaccagagttcaaggtctactgctcctttctgggacggt
gcttctttcggtgttgccatctctcacactgctcttcccgatcctctcaagcttcgtcct
ggtggtcttaccccgcagcagttcagggtctatgaagattttggcgagcctacaaggatg
ctgtcctctcaccctgctgccaacggcgattatctatccgccagctatcaaaaccttact
ctcaacgacgggctcgttcctgcggaaatcaagactggcccttcgcctcgtcacggcttt
gttcaagacgttgctgaggctcctgaagttgttgcatcaccccatgctatcccacctcag
actagcattgacaaattccacgaagttgcggctgagatacagaagatcgtctctcagacc
cctgtacctagcatttcggcccttccggccgaccatgagctgcgagatcttattcgagcc
atcgtcattatagcgaaccagtctgtgcacagggagaacacgactttggcgattgcccaa
aaagttgtgcagctattgtacagatccacggtacagttgggtagggaagtatatgtgtac
ttgttgcagcagctgtgcgatttgtcggcgaaggtggacaaggaagtgaagcagtggttg
atctatgcggaggatgtgaggaagctgaatgtccctgtcactgtaactcttcttcgcgcg
cagtccattggcgtgcaagagcttgatgtcgccctttcccacatcgtcatccgatcctat
ccttccgaaatcctcgacttcgtcactcaactcattcgtgaatgctcggtgtctgatatc
gcattccttccccggcaggccttctctcatagtctggcttcgctcctcaaggctcaggaa
gctggtcatgctactgctcaagttgactcattactcgaggagcttcgtggcccacgagag
cctcagagtagcgtcgagggtgaccggtccaagactgtcattgacagcaagcttcaggag
cggttggcacactacttcttggagtgggtccgggtctgcagctctagcaaggatcctgaa
gttccatttgtgccctacattactttcttgcaaaaggagggtatcctcagcggtgaggat
gtctcatctgcattttaccgtactgctatcaatactgccgtcgatctcgacaccgctaag
cttaaccccgatggctcgtcaaggttctacggcgtggatgctttggccaaactcattcta
ctcatcgttaaaaactacggtgacaagagcggagccagcagtgttggcagagctgtctac
tattacaacaagatcattacgatcatgtcgtactccctcgtgcaaaggcaacttgccatg
ggtgatgctttcaaccagcgaccttgggccagattctttacaagtatgttgagcgagttg
gccactattgagtataaccttcctgagacatatatcggctgcttgaagcaccttgccaac
aatctcggcattactcagcccacctacgcccctcgcttcgcgttcggttgggtctcaatc
atttcccaccgtcttttcatgcctaaactcctctccacccaaagggacgaagggtggccc
gagttccaccgatgtgtcatgtggctccttcgcttccttgcgcccttccttcaatcagat
gacatgactccttcgtcaaggtcaatcttcagagccactattcgacttctcatgcttctt
ttgcatgacttccccgagttcctcgttgagttctaccatactctctcgaccgtcattcct
ccccactgcactcaaatgcgaaacatcgtcctttctgctttccctcattccgaggctcct
cttcccgattactataagcggcttgatcagcttgttgtggagatgcaacgattccccacc
gttcgctcagactacattggcgcgttggccgacggcaacgtcaaggccgccatcgaccag
tatgtccggactggcgtccctactcttccttcaattgtggcggagctcaagaacaggatt
gcggtcaagtctttaggtcctcaaggcagcactgctgtcacatggaaccacacattaatg
catgcgtcagtcttctatcttggtaccactgcggttgccaggaccttccagcaaacaggt
gttgtgagctttgacccgaaggctcctgaggtggccgtgttggctggtttggcacatgcg
tttgacggcgaaggccaatactatatgctcaacgtggttgctgatcagcttcgataccca
tctgctcatacccttttcttcatccattttatgctcttccttttcggtaccagcgtgcaa
cccgagctttcatctaccattcccgagcgtatcgctcgtatccttctcgaacgaaccatc
gtcaaacgccctcatccttggggtctacttgtcactttcatcgagttgctcgacaacgag
gcttatgggttctggaaacagccatttgtcagggcgcaggatgaggtgtttaggctcttc
ggccaagtgcgacagtctgtcgcggcgcgcagggaattgcagtag
DBGET
integrated database retrieval system
