Castellaniella defragrans: BN940_11176
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Entry
BN940_11176 CDS
T03058
Name
(GenBank) Excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
cdn
Castellaniella defragrans
Pathway
cdn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cdn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BN940_11176
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cdn03400
]
BN940_11176
DNA repair and recombination proteins [BR:
cdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BN940_11176
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BN940_11176
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
Kinesin
AAA_22
DUF87
Microtub_bd
AAA_33
Motif
Other DBs
NCBI-ProteinID:
CDM24695
UniProt:
W8X9E7
LinkDB
All DBs
Position
complement(2414150..2416150)
Genome browser
AA seq
666 aa
AA seq
DB search
MHFPDSPFQLFQPYPPAGDQPAAIDTLEEGVRDGLMCQTLLGVTGSGKTYTMANLIARTG
RPAIVLAPNKTLAAQLYAEMREFFPRNAVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINE
HIEQMRLSATKSLLERPDTIIVGTVSCIYGIGNPGDYHAMVLTLRTGDRIGRQEILARLV
SMQYERNDTEFSRGTFRARGEVIDVFPAEHAEHALRITLFDDEIESLDLFDPLTGKPVQS
LVRFTIFPSSHYVTPRETVLRAIETIKDELRERLAELTAAGRLVEAQRLEQRTRFDLEML
QELGFCKGIENYSRHLSGALPGEPPPTLIDYLPANALMFIDESHVTIGQLGGMYRGDRSR
KETLVQFGFRLPSALDNRPLRLEEFEARMPQCVFVSATPGPYEAAHADQVVEQVVRPTGL
VDPEVELRPAATQVDDLLGEAKLRIARHERVLVTTLTKRMAEDLTEYLGENGLKVRYLHS
DIDTVERVEIIRDLRLGAFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQT
IGRAARNLNGRAILYADRVTDSMRRAMDETARRREKQQAFNIEHGITARGVSKAVRDLID
GVSAAAAAAPVAAGYDESALHDEKSLAREIRRLEQRMNEHARNLEFEQAASVRDALRALK
ARALME
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
gtgcattttccagacagtccgtttcagcttttccagccctatccgcccgccggcgaccag
ccggccgcgatcgacacgctggaagagggcgtgcgcgatgggctcatgtgccagacgctc
ctgggggtgacgggctcgggcaagacctacaccatggccaacctgatcgcccgcaccggg
cggccggccatcgtgctggcgcccaacaagactctggccgcccagctctacgccgagatg
cgcgaattcttcccgcgcaacgcggtggaatacttcgtgtcctactacgattactaccag
ccggaggcctacgtgccctcgcgcgacctgttcatcgagaaggactcgtccatcaacgag
cacatcgagcagatgcgcctgtcggccaccaagagcctgctggagcgccccgacaccatc
atcgtgggcacggtgtcctgcatctacggcatcggcaacccgggcgactaccacgccatg
gtgctgacgctgcgcacgggcgaccggatcggccgccaggaaatcctggcgcggctggtg
tccatgcagtacgagcgcaacgacacggaattctcccgcgggaccttccgggcgcgcggc
gaggtgatcgacgtcttcccggccgagcacgccgagcatgccttgcgcatcacgctgttc
gacgacgagatcgagtccctggacctgttcgatcccctgacgggcaagccggtgcagagc
ctggtgcgtttcacgatctttcccagttcgcactacgtgacgccgcgcgagaccgtgctg
cgcgccatcgagacgatcaaggacgaactgcgcgagcgcctggccgaactgacggcggcg
ggccggctggtcgaggcccagcggctggagcagcgcacccgcttcgatctggagatgctg
caggaactgggattctgcaagggcatcgagaactattcccggcacctgtcgggcgccctg
ccgggcgagccgccgcccacgctgatcgactacctgccggccaacgccctgatgttcatc
gacgagagccacgtcaccatcggccagctgggcggcatgtaccggggcgaccgctcgcgc
aaggaaaccctggtccagttcggcttccgcctgccctcggcgctggacaaccggcccctg
cggctggaggaattcgaggcgcgcatgccgcagtgcgtgttcgtctccgccacgccgggg
ccctacgaggccgcgcacgcggaccaggtggtcgagcaggtggtgcgcccgaccggcctg
gtggatccggaggtcgagctgcgcccggccgccacccaggtcgacgatctgctgggcgag
gccaagctgcgcatcgcgcgccacgagcgggtgctggtcaccacgctgaccaagcgcatg
gccgaggacctgaccgaatacctgggggaaaacggcctcaaggtgcgctacctgcattcg
gacatcgacacggtggagcgcgtcgagatcatccgcgacctgcgcctgggcgccttcgac
gtgctggtcgggatcaacctgctgcgcgagggcctggacatcccggaagtctcgctggtg
gcgatcctggacgccgacaaggaaggctttctgcgttccgagcgcagcctgatccagacc
atcggccgcgcggcgcgcaacctgaacgggcgcgccatcctgtatgcggaccgggtgacc
gattccatgcgccgggccatggacgagacggcccgccgccgggaaaagcagcaggccttc
aacatcgagcacggcatcacggcccgcggcgtcagcaaggcggtgcgcgacctgatcgac
ggggtgtccgcggcggcggccgcggcgccggtcgcggcgggctacgacgaatcggccctg
cacgacgaaaagtccctggcgcgggagatccgccgcctggagcagcgcatgaacgagcac
gcccgcaacctggagttcgagcaggcggcctcggtgcgcgacgccctgcgcgccctgaag
gcccgcgcgctgatggagtga
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